1. Structural basis for Cul3 protein assembly with the BTB-Kelch family of E3 ubiquitin ligases
- Author
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Peter Canning, Christopher D.O. Cooper, Tobias Krojer, James W. Murray, Ashley C.W. Pike, Apirat Chaikuad, Tracy Keates, Chancievan Thangaratnarajah, Viktorija Hojzan, Vikram Ayinampudi, Brian D. Marsden, Opher Gileadi, Stefan Knapp, Frank von Delft, and Alex N. Bullock
- Subjects
Models, Molecular ,Protein Conformation ,Molecular Conformation ,Crystallography, X-Ray ,Biochemistry ,Protein Structure, Secondary ,Substrate Specificity ,Degradation ,X-ray Crystallography ,0302 clinical medicine ,Protein structure ,Ubiquitin ,Protein Interaction Mapping ,Phylogeny ,0303 health sciences ,biology ,030302 biochemistry & molecular biology ,Cullin Proteins ,Ubiquitin ligase ,β-Propeller ,Protein Structure and Folding ,Additions and Corrections ,Dimerization ,Cullin ,Protein Binding ,Proteasome Endopeptidase Complex ,Ubiquitin-Protein Ligases ,Computational biology ,Calorimetry ,Protein–protein interaction ,QH301 ,03 medical and health sciences ,Humans ,Molecular Biology ,030304 developmental biology ,Binding Sites ,Proteasome ,Ubiquitination ,Cell Biology ,Molecular biology ,Signaling ,Protein Structure, Tertiary ,Protein-Protein Interactions ,biology.protein ,Carrier Proteins ,030217 neurology & neurosurgery - Abstract
Background: BTB-Kelch proteins, including KLHL11, are proposed to bind Cul3 through a “3-box” motif to form E3 ubiquitin ligases. Results: We solved crystal structures of the KLHL11-Cul3 complex and four Kelch domains. Conclusion: The 3-box forms a hydrophobic groove that binds a specific N-terminal extension of Cul3. Significance: Dimeric BTB-Kelch proteins bind two Cul3 molecules and support a two-site model for substrate recognition., Cullin-RING ligases are multisubunit E3 ubiquitin ligases that recruit substrate-specific adaptors to catalyze protein ubiquitylation. Cul3-based Cullin-RING ligases are uniquely associated with BTB adaptors that incorporate homodimerization, Cul3 assembly, and substrate recognition into a single multidomain protein, of which the best known are BTB-BACK-Kelch domain proteins, including KEAP1. Cul3 assembly requires a BTB protein “3-box” motif, analogous to the F-box and SOCS box motifs of other Cullin-based E3s. To define the molecular basis for this assembly and the overall architecture of the E3, we determined the crystal structures of the BTB-BACK domains of KLHL11 both alone and in complex with Cul3, along with the Kelch domain structures of KLHL2 (Mayven), KLHL7, KLHL12, and KBTBD5. We show that Cul3 interaction is dependent on a unique N-terminal extension sequence that packs against the 3-box in a hydrophobic groove centrally located between the BTB and BACK domains. Deletion of this N-terminal region results in a 30-fold loss in affinity. The presented data offer a model for the quaternary assembly of this E3 class that supports the bivalent capture of Nrf2 and reveals potential new sites for E3 inhibitor design.
- Published
- 2013
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