1. Structural and biochemical analyses reveal quinic acid inhibits DAHP synthase a key player in shikimate pathway.
- Author
-
Jangid K, Mahto JK, Kumar KA, Dhaka P, Sharma A, Tariq A, Sharma AK, and Kumar P
- Subjects
- Crystallography, X-Ray, Bacterial Proteins metabolism, Bacterial Proteins chemistry, Bacterial Proteins antagonists & inhibitors, Enzyme Inhibitors pharmacology, Enzyme Inhibitors chemistry, Phenylalanine metabolism, Phenylalanine chemistry, Models, Molecular, Protein Conformation, Quinic Acid analogs & derivatives, Quinic Acid chemistry, Quinic Acid metabolism, Quinic Acid pharmacology, Shikimic Acid metabolism, Shikimic Acid chemistry, Shikimic Acid analogs & derivatives, 3-Deoxy-7-Phosphoheptulonate Synthase metabolism, 3-Deoxy-7-Phosphoheptulonate Synthase chemistry, 3-Deoxy-7-Phosphoheptulonate Synthase antagonists & inhibitors, Providencia enzymology
- Abstract
The shikimate pathway, essential for aromatic amino acid biosynthesis, is absent in animals, making its enzymes promising targets for developing antimicrobials. 3-Deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHPS) catalyzes the first committed step, which serves as the primary checkpoint for regulating the flow within the pathway, regulated by its end products (Phe, Tyr and Trp). Previously, we identified chlorogenic acid (CGA), an ester of caffeic and quinic acid, as an inhibitor of DAHPS from Bacillus subtilis, prompting us to investigate quinic acid as a potential inhibitor of Providencia alcalifaciens DAHPS (PaDAHPS). Here, we report the crystal structures of phenylalanine-sensitive DAHPS from Providenciaalcalifaciens in complex with phenylalanine (Phe) and quinic acid (QA) at resolutions of 2.5 Å and 2.68 Å, respectively. Structural analysis reveals that QA binds to the same site as Phe, with biophysical assays showing a similar binding affinity (K
D = 42 μM for QA and KD = 32 μM for Phe). In vitro inhibition studies demonstrated that QA and Phe inhibit PaDAHPS activity, withapp Ki values of 382 μM and 132 μM, respectively. Additionally, QA inhibited the growth of several bacterial species, including Pseudomonas aeruginosa, Moraxella catarrhalis, Providencia alcalifaciens, Staphylococcus aureus, Escherichia coli with minimum inhibitory concentrations (MICs) ranging from 2.5 to 5 mg/ml. These findings identify quinic acid as a promising scaffold for developing novel antimicrobial agents targeting the shikimate pathway, providing potential therapeutic strategies for bacterial infections., Competing Interests: Declaration of competing interests The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2025
- Full Text
- View/download PDF