1. Effectiveness of clinical exome sequencing in adult patients with difficult‐to‐diagnose neurological disorders
- Author
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Virva Hyttinen, Markus T. Sainio, Juho Aaltio, Henna Tyynismaa, Pentti J. Tienari, Emil Ylikallio, Simo Ojanen, Anders Paetau, Mika Kortelainen, Mari Auranen, STEMM - Stem Cells and Metabolism Research Program, Centre of Excellence in Stem Cell Metabolism, Faculty of Medicine, Veterinary Biosciences, HUSLAB, University of Helsinki, Department of Pathology, Clinicum, Department of Neurosciences, HUS Neurocenter, Department of Medical and Clinical Genetics, and Henna Tyynismaa / Principal Investigator
- Subjects
Pediatrics ,VARIANTS ,3124 Neurology and psychiatry ,Cohort Studies ,MYOPATHY ,0302 clinical medicine ,ATP-Dependent Proteases ,cost analysis ,diagnostics ,Exome ,NAV1.4 Voltage-Gated Sodium Channel ,neurological disease ,CHANNEL GENE ,EPILEPSY ,Exome sequencing ,0303 health sciences ,Parkinsonism ,Nuclear Proteins ,clinical exome sequencing ,General Medicine ,Peptidylprolyl Isomerase ,PANELS ,3. Good health ,Neurology ,Cohort ,medicine.symptom ,Adult ,medicine.medical_specialty ,Ataxia ,Anoctamins ,03 medical and health sciences ,Parkinsonian Disorders ,medicine ,Humans ,Myopathy ,Retrospective Studies ,030304 developmental biology ,SPECTRUM ,MUTATIONS ,Genetic heterogeneity ,business.industry ,NEUROPATHY ,medicine.disease ,MUSCULAR-DYSTROPHY ,Peripheral neuropathy ,Mutation ,ATPases Associated with Diverse Cellular Activities ,Neurology (clinical) ,Nervous System Diseases ,Age of onset ,Carrier Proteins ,business ,030217 neurology & neurosurgery - Abstract
Objectives Clinical diagnostics in adults with hereditary neurological diseases is complicated by clinical and genetic heterogeneity, as well as lifestyle effects. Here, we evaluate the effectiveness of exome sequencing and clinical costs in our difficult-to-diagnose adult patient cohort. Additionally, we expand the phenotypic and genetic spectrum of hereditary neurological disorders in Finland. Methods We performed clinical exome sequencing (CES) to 100 adult patients from Finland with neurological symptoms of suspected genetic cause. The patients were classified as myopathy (n = 57), peripheral neuropathy (n = 16), ataxia (n = 15), spastic paraplegia (n = 4), Parkinsonism (n = 3), and mixed (n = 5). In addition, we gathered the costs of prior diagnostic work-up to retrospectively assess the cost-effectiveness of CES as a first-line diagnostic tool. Results The overall diagnostic yield of CES was 27%. Pathogenic variants were found for 14 patients (in genes ANO5, CHCHD10, CLCN1, DES, DOK7, FKBP14, POLG, PYROXD1, SCN4A, TUBB3, and TTN) and likely pathogenic previously undescribed variants for 13 patients (in genes ABCD1, AFG3L2, ATL1, CACNA1A, COL6A1, DYSF, IRF2BPL, KCNA1, MT-ATP6, SAMD9L, SGCB, and TPM2). Age of onset below 40 years increased the probability of finding a genetic cause. Our cost evaluation of prior diagnostic work-up suggested that early CES would be cost-effective in this patient group, in which diagnostic costs increase linearly with prolonged investigations. Conclusions Based on our results, CES is a cost-effective, powerful first-line diagnostic tool in establishing the molecular diagnosis in adult neurological patients with variable symptoms. Importantly, CES can markedly shorten the diagnostic odysseys of about one third of patients.
- Published
- 2021