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Submarine fan sediments are essential archives for understanding the interaction between continental weathering and climate change, but decoding multiple geological and environmental factors in such highly dynamic sedimentary environments is challenging. Here we present a high-resolution magnetic mineral record spanning the past ∼40 ka from the central Bengal Fan. Comprehensive rock magnetic and electron microscopic analyses are conducted to understand the origins of different magnetic mineral components in response to sedimentary and paleoclimate processes. Detrital magnetite and titanomagnetite are the dominant magnetic minerals in Bengal Fan sediments, whose abundance and grain size are primarily controlled by eustatic sea-level change. Increased Himalaya terrestrial input during Heinrich events is documented during sea-level low stand, but magnetic mineral variations and climate events are decoupled due to enhanced Indian hemipelagic sediment input since the last deglaciation sea-level rise. In addition, we identify an enriched biogenic magnetite layer near the Fe-redox boundary in the studied Bengal Fan sediment core, possibly related to relatively mild post-depositional diagenesis. Massive detrital inputs in the submarine fan sediments dilute the contribution of biogenic magnetite to the bulk magnetic record. Our results contribute to an integrated source-to-sink understanding of magnetic mineral components in continental margin submarine fans, which helps to construct multi-proxy Quaternary paleoclimate and paleogeography records in typical submarine fan deposits. • Direct recognition of detrital/biogenic magnetic minerals in Bengal Fan sediments. • Sea-level controls variations of detrital magnetic mineral component. • Stadial terrestrial input was enhanced during sea-level low stand. • Increased hemipelagic sediments at sea-level high stand reduce climate sensitivity. • Thriving biogenic magnetite near diagenetic Fe-redox boundary. [ABSTRACT FROM AUTHOR]