1. Comparative transcriptome analysis of Eriocheir japonica sinensis response to environmental salinity.
- Author
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Zhang, Daizhen, Liu, Jun, Qi, Tingting, Ge, Baoming, Liu, Qiuning, Jiang, Senhao, Zhang, Huabin, Wang, Zhengfei, Ding, Ge, and Tang, Boping
- Subjects
CHINESE mitten crab ,TRANSCRIPTOMES ,SALINITY ,IMMUNE system ,ADENOSINE triphosphatase ,PHYSIOLOGY - Abstract
Chinese mitten crabs (Eriocheir japonica sinensis) are catadromous, spending most of their lives in fresh water, but moving to a mixed salt-fresh water environment for reproduction. The characteristics of this life history might imply a rapidly evolutionary transition model for adaptation to marine from freshwater habitats. In this study, transcriptome-wide identification and differential expression on Chinese mitten crab groups were analysed. Results showed: clean reads that were obtained totalled 93,833,096 (47,440,998 in Group EF, the reference, and 46,392,098 in Group ES, the experimental) and 14.08G (7.12G in Group EF 6.96G in Group ES); there were 11,667 unigenes (15.29%) annotated, and they were located to 230 known KEGG pathways in five major categories; in differential expression analysis, most of the top 20 up-regulated pathways were connected to the immune system, disease, and signal transduction, while most of the top 20 down-regulated pathways were related to the metabolism system; meanwhile, 8 representative osmoregulation-related genes (14-3-3 epsilon, Cu
2+ transport ATPase, Na+ /K+ ATPase, Ca2+ transporting ATPase, V-ATPase subunit A, Putative arsenite-translocating ATPase, and Cation transport ATPase, Na+ /K+ symporter) showed up-regulation, and 1 osmoregulation-related gene (V-ATPase subunit H) showed down-regulation. V-ATPase subunit H was very sensitive to the transition of habitats. These results were consistent with the tests of qRT-PCR. The present study has provided a foundation to further understand the molecular mechanism in response to salinity changing in water. [ABSTRACT FROM AUTHOR]- Published
- 2018
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