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A semi-automatic system for determining volumes of interest (VOI) from positron emission tomography (PET) scans of brain is described. The VOIs surface extraction is based on user selectable threshold and three-dimensional target flood-fill. Contrast to anatomical volume detection approaches, volumes are determined from functional PET images and the obtained objects are checked against anatomical images. The developed VOI program was evaluated with brain FDOPA-PET studies where the striatum was the object. The results were comparable to entirely manual method and the target extraction time is reduced to about one third of manual method.

In this study, we propose and evaluate new methods for automatic extraction of the brain surface and the mid-sagittal plane from functional positron emission tomography (PET) images. Designing methods for these segmentation tasks is challenging because the spatial distribution of intensity values in a PET image depends on the applied radiopharmaceutical and the contrast to noise ratio in a PET image is typically low. We extracted the brain surface with a deformable model which is based on a global optimization algorithm. The global optimization allows reliable automation of the extraction task. Based on the extracted brain surface, the mid-sagittal plane was determined. The method was tested with the image of the Hoffman brain phantom (FDG) and the images from the brain studies with the FDG (17 images) and the C11-Raclopride tracers (4 images). In addition to the brain surfaces, we applied the deformable model for extraction of the coarse cortical structure based on the tracer uptake from FDG-PET brain images. The proposed segmentation methods provide a promising direction for automatic processing and analysis of PET brain images.