13 results on '"Nielsen NC"'
Search Results
2. Efficient polarization transfer between spin-1/2 and ¹⁴N nuclei in solid-state MAS NMR spectroscopy.
- Author
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Basse K, Jain SK, Bakharev O, and Nielsen NC
- Subjects
- Computer Simulation, Spin Labels, Algorithms, Magnetic Resonance Spectroscopy methods, Models, Chemical, Nitrogen analysis, Nitrogen chemistry
- Abstract
Polarization transfer between spin-1/2 nuclei and quadrupolar spin-1 nuclei such as (14)N in solid-state NMR is severely challenged by the typical presence of large quadrupole coupling interactions. This has effectively prevented the use of the abundant (14)N spin as a probe to structural information and its use as an element in multi-dimensional solid-state NMR correlation experiments for assignment and structural characterization. In turn, this has been a contributing factor to the extensive use of isotope labeling in biological solid-state NMR, where (14)N is replaced with (15)N. The alternative strategy of using the abundant (14)N spins calls for methods enabling efficient polarization transfer between (14)N and its binding partners. This work demonstrates that the recently introduced (RESPIRATION)CP transfer method can be optimized to achieve efficient (1)H ↔(14)N polarization transfer under magic angle spinning conditions. The method is demonstrated numerically and experimentally on powder samples of NH4NO3 and L-alanine., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
3. Storage of magnetization as singlet order by optimal control designed pulses.
- Author
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Laustsen C, Bowen S, Vinding MS, Nielsen NC, and Ardenkjaer-Larsen JH
- Subjects
- Feedback, Reproducibility of Results, Sensitivity and Specificity, Spin Labels, Algorithms, Biopolymers analysis, Magnetic Resonance Spectroscopy methods, Signal Processing, Computer-Assisted
- Abstract
Purpose: The use of hyperpolarization to enhance the sensitivity of MRI has so far been limited by the decay of the polarization through T1 relaxation. Recently, methods have been proposed that extend the lifetime of the hyperpolarization by storing the spin order in slowly relaxing singlet states., Methods: With this aim, optimal control theory was applied to create pulses that for near-equivalent spins accomplish transfers in and out of the singlet state with maximum efficiency while ensuring robustness toward variations in the nuclear spin system Hamiltonian (chemical shift, J-couplings, B1 and B0 magnetic field inhomogeneity)., Results: The pulses are designed to accomplish efficient transfer with low B1 amplitude, essential for applications on preclinical and clinical MR scanners., Conclusion: It is demonstrated that significantly improved efficiency and robustness can be obtained within the limitations of typical MR scanner performance., (Copyright © 2013 Wiley Periodicals, Inc.)
- Published
- 2014
- Full Text
- View/download PDF
4. Fast numerical design of spatial-selective rf pulses in MRI using Krotov and quasi-Newton based optimal control methods.
- Author
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Vinding MS, Maximov II, Tošner Z, and Nielsen NC
- Subjects
- Computer Simulation, Magnetic Fields, Signal Processing, Computer-Assisted, Algorithms, Image Enhancement methods, Magnetic Resonance Imaging methods
- Abstract
The use of increasingly strong magnetic fields in magnetic resonance imaging (MRI) improves sensitivity, susceptibility contrast, and spatial or spectral resolution for functional and localized spectroscopic imaging applications. However, along with these benefits come the challenges of increasing static field (B(0)) and rf field (B(1)) inhomogeneities induced by radial field susceptibility differences and poorer dielectric properties of objects in the scanner. Increasing fields also impose the need for rf irradiation at higher frequencies which may lead to elevated patient energy absorption, eventually posing a safety risk. These reasons have motivated the use of multidimensional rf pulses and parallel rf transmission, and their combination with tailoring of rf pulses for fast and low-power rf performance. For the latter application, analytical and approximate solutions are well-established in linear regimes, however, with increasing nonlinearities and constraints on the rf pulses, numerical iterative methods become attractive. Among such procedures, optimal control methods have recently demonstrated great potential. Here, we present a Krotov-based optimal control approach which as compared to earlier approaches provides very fast, monotonic convergence even without educated initial guesses. This is essential for in vivo MRI applications. The method is compared to a second-order gradient ascent method relying on the Broyden-Fletcher-Goldfarb-Shanno (BFGS) quasi-Newton method, and a hybrid scheme Krotov-BFGS is also introduced in this study. These optimal control approaches are demonstrated by the design of a 2D spatial selective rf pulse exciting the letters "JCP" in a water phantom.
- Published
- 2012
- Full Text
- View/download PDF
5. A comparison of NCO and NCA transfer methods for biological solid-state NMR spectroscopy.
- Author
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Loening NM, Bjerring M, Nielsen NC, and Oschkinat H
- Subjects
- Carbon Isotopes analysis, Carbon Isotopes chemistry, Nitrogen Isotopes analysis, Nitrogen Isotopes chemistry, Reproducibility of Results, Sensitivity and Specificity, Staining and Labeling, Algorithms, Biopolymers analysis, Biopolymers chemistry, Magnetic Resonance Spectroscopy methods
- Abstract
Three different techniques (adiabatic passage Hartman-Hahn cross-polarization, optimal control designed pulses, and EXPORT) are compared for transferring (15)N magnetization to (13)C in solid-state NMR experiments under magic-angle-spinning conditions. We demonstrate that, in comparison to adiabatic passage Hartman-Hahn cross-polarization, optimal control transfer pulses achieve similar or better transfer efficiencies for uniformly-(13)C,(15)N labeled samples and are generally superior for samples with non-uniform labeling schemes (such as 1,3- and 2-(13)C glycerol labeling). In addition, the optimal control pulses typically use substantially lower average RF field strengths and are more robust with respect to experimental variation and RF inhomogeneity. Consequently, they are better suited for demanding samples., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
6. Rapid solid-state NMR of deuterated proteins by interleaved cross-polarization from ¹H and ²H nuclei.
- Author
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Bjerring M, Paaske B, Oschkinat H, Akbey U, and Nielsen NC
- Subjects
- Protons, Algorithms, Deuterium chemistry, Deuterium Exchange Measurement methods, Magnetic Resonance Spectroscopy methods, Proteins chemistry, Proteins ultrastructure, Signal Processing, Computer-Assisted
- Abstract
We present a novel sampling strategy, interleaving acquisition of multiple NMR spectra by exploiting initial polarization subsequently from (1)H and (2)H spins, taking advantage of their different T(1) relaxation times. Different (1)H- and (2)H-polarization based spectra are in this way simultaneously recorded improving either information content or sensitivity by adding spectra. The so-called Relaxation-optimized Acquisition of Proton Interleaved with Deuterium (RAPID) (1)H→(13)C/(2)H→(13)C CP/MAS multiple-acquisition method is demonstrated by 1D and 2D experiments using a uniformly (2)H, (15)N,(13)C-labeled α-spectrin SH3 domain sample with all or 30% back-exchanged labile (2)H to (1)H. It is demonstrated how 1D (13)C CP/MAS or 2D (13)C-(13)C correlation spectra initialized with polarization from either (1)H or (2)H may be recorded simultaneously with flexibility to be added or used individually for spectral editing. It is also shown how 2D (13)C-(13)C correlation spectra may be recorded interleaved with (2)H-(13)C correlation spectra to obtain (13)C-(13)C correlations along with information about dynamics from (2)H sideband patterns., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
7. A smoothing monotonic convergent optimal control algorithm for nuclear magnetic resonance pulse sequence design.
- Author
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Maximov II, Salomon J, Turinici G, and Nielsen NC
- Subjects
- Algorithms, Magnetic Resonance Spectroscopy methods
- Abstract
The past decade has demonstrated increasing interests in using optimal control based methods within coherent quantum controllable systems. The versatility of such methods has been demonstrated with particular elegance within nuclear magnetic resonance (NMR) where natural separation between coherent and dissipative spin dynamics processes has enabled coherent quantum control over long periods of time to shape the experiment to almost ideal adoption to the spin system and external manipulations. This has led to new design principles as well as powerful new experimental methods within magnetic resonance imaging, liquid-state and solid-state NMR spectroscopy. For this development to continue and expand, it is crucially important to constantly improve the underlying numerical algorithms to provide numerical solutions which are optimally compatible with implementation on current instrumentation and at same time are numerically stable and offer fast monotonic convergence toward the target. Addressing such aims, we here present a smoothing monotonically convergent algorithm for pulse sequence design in magnetic resonance which with improved optimization stability lead to smooth pulse sequence easier to implement experimentally and potentially understand within the analytical framework of modern NMR spectroscopy.
- Published
- 2010
- Full Text
- View/download PDF
8. Defining the sampling space in multidimensional NMR experiments: what should the maximum sampling time be?
- Author
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Vosegaard T and Nielsen NC
- Subjects
- Computer Simulation, Sample Size, Algorithms, Data Interpretation, Statistical, Magnetic Resonance Spectroscopy methods
- Abstract
Efficient sampling of signals is a key issue for multiple-dimensional NMR experiments to establish the best ratio between experiment time and spectral quality. Focussing on the most widely used sampling strategy using standard rectangular sampling and data analysis by Fourier transformation, a central question is concerned with determining the optimal maximum sampling time in the individual dimensions. The spectral resolution depends directly on this choice, as do the overall experiment times when addressing the indirect dimensions. We present a theoretical, numerical, and experimental analysis of the sampling space problem and propose approaches to efficient sampling for typical cases.
- Published
- 2009
- Full Text
- View/download PDF
9. Optimal control in NMR spectroscopy: numerical implementation in SIMPSON.
- Author
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Tosner Z, Vosegaard T, Kehlet C, Khaneja N, Glaser SJ, and Nielsen NC
- Subjects
- Computer Simulation, Quantum Theory, Algorithms, Magnetic Resonance Spectroscopy statistics & numerical data, Software
- Abstract
We present the implementation of optimal control into the open source simulation package SIMPSON for development and optimization of nuclear magnetic resonance experiments for a wide range of applications, including liquid- and solid-state NMR, magnetic resonance imaging, quantum computation, and combinations between NMR and other spectroscopies. Optimal control enables efficient optimization of NMR experiments in terms of amplitudes, phases, offsets etc. for hundreds-to-thousands of pulses to fully exploit the experimentally available high degree of freedom in pulse sequences to combat variations/limitations in experimental or spin system parameters or design experiments with specific properties typically not covered as easily by standard design procedures. This facilitates straightforward optimization of experiments under consideration of rf and static field inhomogeneities, limitations in available or desired rf field strengths (e.g., for reduction of sample heating), spread in resonance offsets or coupling parameters, variations in spin systems etc. to meet the actual experimental conditions as close as possible. The paper provides a brief account on the relevant theory and in particular the computational interface relevant for optimization of state-to-state transfer (on the density operator level) and the effective Hamiltonian on the level of propagators along with several representative examples within liquid- and solid-state NMR spectroscopy.
- Published
- 2009
- Full Text
- View/download PDF
10. Clean HMBC: suppression of strong-coupling induced artifacts in HMBC spectra.
- Author
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Würtz P, Permi P, Nielsen NC, and Sørensen OW
- Subjects
- Computer Simulation, Reproducibility of Results, Sensitivity and Specificity, Signal Processing, Computer-Assisted, Algorithms, Artifacts, Models, Chemical, Nuclear Magnetic Resonance, Biomolecular methods
- Abstract
A new experiment, clean HMBC, is introduced for suppression of strong-coupling induced artifacts in HMBC spectra. The culprits of these artifacts are an inherent shortcoming of low-pass J filters in the presence of strong coupling and the (1)H pi pulse in the middle of the evolution period aimed at suppressing evolution under heteronuclear J couplings and (1)H chemical shifts. A pi pulse causes coherence transfer in strongly coupled spin systems and, as is well known in e.g., homonuclear J spectra, this leads to peaks that would not be there in the absence of strong coupling. Similar artifacts occur in HMBC spectra, but they have apparently been overlooked, presumably because they have been assigned to inefficiency of low-pass J filters or not noticed because of a coarse digital resolution in the spectra. Clean HMBC is the HMBC technique of choice for molecules notorious for strong coupling among protons, such as carbohydrates, and the new technique is demonstrated on D-mannose. Finally, a fundamental difference between HMBC and H2BC explains why strong-coupling artifacts are much less of a problem in the latter type of spectra.
- Published
- 2008
- Full Text
- View/download PDF
11. Optimal control design of NMR and dynamic nuclear polarization experiments using monotonically convergent algorithms.
- Author
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Maximov II, Tosner Z, and Nielsen NC
- Subjects
- Microwaves, Quantum Theory, Radio Waves, Time Factors, Algorithms, Magnetic Resonance Spectroscopy methods
- Abstract
Optimal control theory has recently been introduced to nuclear magnetic resonance (NMR) spectroscopy as a means to systematically design and optimize pulse sequences for liquid- and solid-state applications. This has so far primarily involved numerical optimization using gradient-based methods, which allow for the optimization of a large number of pulse sequence parameters in a concerted way to maximize the efficiency of transfer between given spin states or shape the nuclear spin Hamiltonian to a particular form, both within a given period of time. Using such tools, a variety of new pulse sequences with improved performance have been developed, and the NMR spin engineers have been challenged to consider alternative routes for analytical experiment design to meet similar performance. In addition, it has lead to increasing demands to the numerical procedures used in the optimization process in terms of computational speed and fast convergence. With the latter aspect in mind, here we introduce an alternative approach to numerical experiment design based on the Krotov formulation of optimal control theory. For practical reasons, the overall radio frequency power delivered to the sample should be minimized to facilitate experimental implementation and avoid excessive sample heating. The presented algorithm makes explicit use of this requirement and iteratively solves the stationary conditions making sure that the maximum of the objective is reached. It is shown that this method is faster per iteration and takes different paths within a control space than gradient-based methods. In the present work, the Krotov approach is demonstrated by the optimization of NMR and dynamic nuclear polarization experiments for various spin systems and using different constraints with respect to radio frequency and microwave power consumption.
- Published
- 2008
- Full Text
- View/download PDF
12. 2D separated-local-field spectra from projections of 1D experiments.
- Author
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Bertelsen K, Pedersen JM, Nielsen NC, and Vosegaard T
- Subjects
- Computer Simulation, Reproducibility of Results, Sensitivity and Specificity, Algorithms, Magnetic Resonance Spectroscopy methods, Models, Chemical, Signal Processing, Computer-Assisted
- Abstract
A novel procedure for reconstruction of 2D separated-local-field (SLF) NMR spectra from projections of 1D NMR data is presented. The technique, dubbed SLF projection reconstruction from one-dimensional spectra (SLF-PRODI), is particularly useful for uniaxially oriented membrane protein samples and represents a fast and robust alternative to the popular PISEMA experiment which correlates (1)H-(15)N dipole-dipole couplings with (15)N chemical shifts. The different 1D projections in the SLF-PRODI experiment are obtained from 1D spectra recorded under influence of homonuclear decoupling sequences with different scaling factors for the heteronuclear dipolar couplings. We demonstrate experimentally and numerically that as few as 2-4 1D projections will normally be sufficient to reconstruct a 2D SLF-PRODI spectrum with a quality resembling typical PISEMA spectra, leading to significant reduction of the acquisition time.
- Published
- 2007
- Full Text
- View/download PDF
13. Efficient spectral simulations in NMR of rotating solids. The gamma-COMPUTE algorithm.
- Author
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Hohwy M, Bildsøe H, Jakobsen HJ, and Nielsen NC
- Subjects
- Anisotropy, Fourier Analysis, Molecular Structure, Algorithms, Computer Simulation, Magnetic Resonance Spectroscopy, Powders chemistry
- Abstract
We explore the time-translational relation between one of the powder angles (gamma) and the sample rotation angle (omegart) in NMR spectroscopy of rotating solids. Averaging over the gamma powder angle is shown to be generally equivalent to a cross correlation of two periodic functions. This leads to a fundamental relation concerning the phases of NMR spectra of rotating solids as well as improved strategies for efficient simulation of experimental spectra. Using these results in combination with the frequency-domain simulation procedure COMPUTE (M. Edén et al., J. Magn. Reson. A 120, 56 (1996)), it proves possible to reduce the computation time for spectral simulations by typically a factor 10-30 relative to the state-of-the-art calculations using the original COMPUTE algorithm. The advantage and the general applicability of the new simulation procedure, referred to as gamma-COMPUTE, are demonstrated by simulation of single- and multiple-pulse MAS NMR spectra of 31P-31P and 1H-1H spin pairs influenced by anisotropic chemical shielding and homonuclear dipolar interactions., (Copyright 1999 Academic Press.)
- Published
- 1999
- Full Text
- View/download PDF
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