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Heat stress (HS) is a major environmental constraint in sustaining global waxy maize production under future climate condition. Starch physicochemical properties under 5‐day (HS5) and 10‐day (HS10) postsilking HS were investigated using two waxy maize hybrids (Suyunuo5 and Yunuo7) as materials. Ambient and high temperatures were 28°C/20℃ and 35°C/27℃, respectively. Starch granules were enlarged and exhibited additional pitting or cellular structures, increased amylopectin chain length, increased relative crystallinity, and increased 1047/1022 cm−1 ratio under HS. This finding indicated the stable and ordered structure of starch granules, especially under HS10. Pasting viscosities of Yunuo7 reduced by HS, and the change was the same under both HS5 and HS10. Peak viscosity of Suyunuo5 was unaffected and breakdown viscosity increased with HS5 although both characteristics decreased with HS10. HS increased gelatinization temperatures and retrogradation percentage. Results showed that HS enlarges starch granules with stable structure, reduces starch viscosities, and increases retrograde tendency, with severe detrimental effect under long HS durations. [ABSTRACT FROM AUTHOR]

• Waterlogging decreased starch granule size. • Waterlogging increased the proportion of long-chains and high-molecular-weight molecules in amylopectin. • Ordered structure of waterlogged starch decreased peak and breakdown viscosities. The grain formation stage is a critical stage that affects grain starch quality and frequently overlaps the rainy season in southern China for waxy maize production. Two waxy maize varieties were grown under control and waterlogging conditions during grain formation (1–15 days after pollination) to probe the effects of oversaturated soil moisture on starch structural and functional characteristics. Results indicated that waterlogging during grain formation decreased the size of starch granule, proportion of large granule (d > 15 μm) and ratio of medium-length chains (DP 10–24) in amylopectin, whereas the percentage of high-molecular-weight molecules were increased. Compared with the control, the percentage of ordered starch was increased by waterlogging for both varieties. The changes in starch internal structure under waterlogging had no influence on thermal stability, increased the maximum thermal decomposition ratio and pasting temperatures, and reduced pasting viscosity characteristics in both varieties. [ABSTRACT FROM AUTHOR]