21 results on '"M.E. Tuttolomondo"'
Search Results
2. A detailed study of intermolecular interactions, electronic and vibrational properties of the metal complex bis(uracilato)diammine copper(ii) dihydrate
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Diego M. Gil, M.E. Tuttolomondo, M.P. Fernández-Liencres, María Inés Gómez, A. Ben Altabef, Amparo Navarro, and M. Gramajo Feijoo
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[CU(URACILATO-N1)2 (NH3)2].2H2O COMPLEX SYNTHESIS ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,Intermolecular force ,Ciencias Químicas ,chemistry.chemical_element ,Química Inorgánica y Nuclear ,010402 general chemistry ,DFT ,01 natural sciences ,Copper ,0104 chemical sciences ,Analytical Chemistry ,Inorganic Chemistry ,Metal ,Crystallography ,RAMAN ,FTIR ,chemistry ,visual_art ,visual_art.visual_art_medium ,CIENCIAS NATURALES Y EXACTAS ,Spectroscopy - Abstract
The aim of this work is to evaluate the vibrational, electronic and structural properties of [Cu(uracilato-N1)2 (NH3)2]2H2O complex. Density Functional Theory (DFT) calculations have been performed to investigate the geometric and electronic structure, and electronic absorption spectrum for the [Cu(uracilato-N1)2 (NH3)2]2H2O complex. In addition, a complete analysis of the normal modes of vibration of the metal complex has been performed using the experimental IR and Raman spectra. The theoretical geometrical parameters obtained by DFT calculations are in very good agreement with the experimental ones obtained by X-ray diffraction methods. A careful study of the intermolecular interactions observed in solid state was performed by using the Hirshfeld surface analysis and their associated 2D fingerprint plots. These results indicate that the crystal packing is stabilized by N-H???O hydrogen bonds interactions and π-stacking. In addition, C-H???π interactions have been observed.Time-dependent density functional theory (TD-DFT) methods employed to investigation the electronic transitions give insights into the optical transition involved in the excitation process. From our calculation results, all of the low-lying electronic states has characterized as a mixture of intraligand charge transfer (ILCT) and ligand to metal charge transfer (LMCT) in character.Finally, we have studied the interactions between nitrogen lone pairs of the ligands and antibonding d-type orbitals and intramolecular interactions in the coordination sphere by means the Natural Bond Orbital (NBO) and Atoms in Molecule (AIM) analysis. Fil: Gramajo Feijoo, Marcelo Eduardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Fernández Liencres, M.P.. Universidad de Jaén; España Fil: Gil, D.M.. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Gómez, M.I.. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia; Argentina Fil: Ben Altabef, Aída. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Navarro, A.. Universidad de Jaén; España Fil: Tuttolomondo, María Eugenia. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia; Argentina
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- 2018
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3. Molecular view of the structural reorganization of water in DPPC multilamellar membranes induced by l -cysteine methyl ester
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Aida Ben Altabef, M.E. Tuttolomondo, S.B. Díaz, and Juan Marcelo Arias
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BILAYERS ,Phospholipid ,Infrared spectroscopy ,02 engineering and technology ,01 natural sciences ,Analytical Chemistry ,Inorganic Chemistry ,L-CYSTEINE METHYL ESTER ,chemistry.chemical_compound ,symbols.namesake ,RAMAN ,Differential scanning calorimetry ,0103 physical sciences ,Molecule ,Fourier transform infrared spectroscopy ,Spectroscopy ,chemistry.chemical_classification ,010304 chemical physics ,Otras Ciencias Químicas ,HYDRATION ,Organic Chemistry ,Ciencias Químicas ,technology, industry, and agriculture ,021001 nanoscience & nanotechnology ,Crystallography ,Membrane ,FTIR ,chemistry ,Thiol ,symbols ,lipids (amino acids, peptides, and proteins) ,0210 nano-technology ,Raman spectroscopy ,PHOSPHOLIPID ,CIENCIAS NATURALES Y EXACTAS - Abstract
In order to study the interaction between L-cysteine methyl ester (CM) and multilamellar vesicles (MLV's) of DPPC, an extensive study was made by various techniques such as Infrared and Raman spectroscopy and Differential Scanning Calorimetry (DSC). Our results revealed by the different techniques used that CM interacts with the DPPC in the region of the polar head, specifying with the phosphate groups, replacing water molecules of hydration by modifying the hydration of the polar head. By Infrared spectroscopy and DSC we observed an increase in the main transition temperature (Tm) and a gradual loss of the pre-transition (Tp) with the increase of the molar ratio CM:DPPC. Of the analyzed, we can conclude that the interaction of CM with DPPC alters the degree of hydration of the membrane altering properties of the same as the transition temperature. Moreover, the results of the thiol site behavior in CM interacting in the CM/DPPC complex will be reveal the possibility of unknown functional roles of the lipidic components of the membrane. Fil: Arias, Juan Marcelo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Tuttolomondo, María Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Díaz, Sonia Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Ben Altabef, Aída. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina
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- 2018
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4. Experimental and quantum chemical studies on the molecular structure of 3,3,3-trifluoropropane-1-sulfonyl chloride: CF3CH2CH2SO2Cl
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J.E. Galván, M.E. Tuttolomondo, M.E. Defonsi Lestard, and A. Ben Altabef
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Raman Spectroscopy ,Infrared spectroscopy ,Quantum Chemical Calculations ,010402 general chemistry ,Hyperconjugation ,01 natural sciences ,Chloride ,Analytical Chemistry ,Inorganic Chemistry ,symbols.namesake ,Computational chemistry ,medicine ,Molecule ,Lone pair ,Spectroscopy ,Basis set ,010405 organic chemistry ,Chemistry ,Otras Ciencias Químicas ,Organic Chemistry ,Ciencias Químicas ,0104 chemical sciences ,Atomic electron transition ,3,3,3-Trifluoropropane-1-Sulfonyl Chloride ,symbols ,Ir Spectroscopy ,Raman spectroscopy ,CIENCIAS NATURALES Y EXACTAS ,medicine.drug - Abstract
The experimental and theoretical study on the molecular and vibrational analysis of CF3CH2CH2SO2Cl, 3,3,3-trifluoropropane 1-sulfonyl chloride is presented. The IR and Raman spectra were recorded in liquid state and compared with the spectral data obtained by the DFT/B3LYP method usingthe6-311G(3df) basis set. The influence of hyperconjugation effects of the lone pairs (LP) chlorine atom on the vibrational behavior of the group SO2 was determined. The TD-DFT approach was applied to assign the electronic transitions observed in the UV-visible spectrum. Fil: Galván, Jorge Edgardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina Fil: Defonsi Lestard, Maria Eliana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina Fil: Tuttolomondo, María Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina Fil: Ben Altabef, Aída. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina
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- 2017
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5. Synthesis, characterization and crystal structure of bis-(methylsulfonylmethyl) sulfone, a symmetric acyclic trisulfone
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J.E. Galván, E. Contreras Aguilar, M.E. Tuttolomondo, Gustavo A. Echeverría, Oscar E. Piro, A. Ben Altabef, Sonia E. Ulic, Mario Eduardo Arena, and Rocío Daniela Inés Molina
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010405 organic chemistry ,Organic Chemistry ,Intermolecular force ,Infrared spectroscopy ,Crystal structure ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Sulfone ,Inorganic Chemistry ,chemistry.chemical_compound ,Crystallography ,symbols.namesake ,chemistry ,Helix ,symbols ,Raman spectroscopy ,Spectroscopy ,Lone pair - Abstract
Bis - (methylsulfonylmethyl) sulfone, BMSMS, was synthesized and characterized through vibrational (IR, Raman) spectroscopy. The crystal structure of BMSMS, determined by X-ray diffraction methods, together with Hirshfeld surfaces analysis were used to evaluate intermolecular interactions. BMSMS can be considered as one-turn helix of about 7.13 A, further stabilized by weak intra-molecular CH•••O bonds. The experimental results were supplemented by quantum chemical calculations. It was also analyzed the hyperconjugative effects of oxygen atoms lone pairs (LP) on the vibrational behavior of the SO2 group. Besides, biofilm formation and QS activity were evaluated on this new bis- (methylsulfonylmethyl) sulfone.
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- 2021
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6. Experimental and theoretical study of the structural features of Vismodegib molecule
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Silvia del Valle Alonso, M. Natalia Calienni, Jorge Montanari, M.E. Tuttolomondo, and Fernando Carlos Alvira
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010405 organic chemistry ,Chemistry ,Organic Chemistry ,Advanced stage ,Vismodegib ,Experimental data ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Characterization (materials science) ,Inorganic Chemistry ,symbols.namesake ,Chemical physics ,Molecular vibration ,medicine ,symbols ,Molecule ,Raman spectroscopy ,Spectroscopy ,medicine.drug - Abstract
We have characterized the structure of Vismodegib, a novel chemotherapeutic agent, recently approved for the treatment of advanced stages of basal cell carcinoma. This article discusses the characterization with theoretical and experimental basis of Vismodegib, providing a thorough insight knowledge of the drug itself. The energy of the structure was minimized employing a commercial code, and different approaches were used to determine the bond distances and hyperconjugative interactions. The information obtained by theoretical calculation was correlated with experimental data of vibrational spectroscopies: FTIR and Raman. The main vibrational modes were theoretically evaluated and correlated with experimental data.
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- 2020
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7. Vibrational studies (FTIR and Raman), conformational analysis, NBO, HOMO–LUMO and reactivity descriptors of S-methyl thiobutanoate, CH3CH2CH2C(O)SCH3
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Aida Ben Altabef, M.E. Tuttolomondo, and Diego M. Gil
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Models, Molecular ,Global and local descriptors ,Molecular Conformation ,Ab initio ,Spectrum Analysis, Raman ,Analytical Chemistry ,symbols.namesake ,Computational chemistry ,Spectroscopy, Fourier Transform Infrared ,Molecule ,Reactivity (chemistry) ,Molecular orbital ,Sulfhydryl Compounds ,Instrumentation ,HOMO/LUMO ,Conformational isomerism ,Spectroscopy ,Chemistry ,Otras Ciencias Químicas ,Ciencias Químicas ,S-methyl thiobutanoate ,Atomic and Molecular Physics, and Optics ,Butyrates ,symbols ,Quantum Theory ,Infrared and Raman spectroscopy ,Internal barrier to rotation ,Raman spectroscopy ,CIENCIAS NATURALES Y EXACTAS ,Natural bond orbital - Abstract
In the present article, the molecular structure of S-methyl thiobutanoate, CH3CH2CH2C(O)SCH3 was determined by ab initio (MP2) and DFT calculations using different basis sets. The infrared and Raman spectra for the liquid phase were also recorded and the bands observed were assigned to the vibrational normal modes. The experimental and calculations confirm the presence of two most stable conformers, one with pseudo anti–syn conformation and another with gauche–syn conformation. The study was completed using natural bond orbital (NBO) and AIM analysis. The molecular properties like dipole moment, molecular electrostatic potential surface (MEP) and HOMO–LUMO molecular orbitals were calculated to get a better insight of the properties of the title molecule. Global and local reactivity descriptors were computed in order to predict reactivity and reactive sites on the molecule for nucleophilic, electrophilic and radical attacks. Fil: Gil, Diego Mauricio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina Fil: Tuttolomondo, María Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina Fil: Ben Altabef, Aída. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina
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- 2015
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8. Layered crystal structure, conformational and vibrational properties of 2,2,2-trichloroethoxysulfonamide: An experimental and theoretical study
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Aida Ben Altabef, Diego M. Gil, Gustavo A. Echeverría, Oscar E. Piro, and M.E. Tuttolomondo
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Models, Molecular ,Halogenation ,Ciencias Físicas ,Ab initio ,Crystal structure ,Crystallography, X-Ray ,Spectrum Analysis, Raman ,Otras Ciencias Físicas ,NATURAL BOND ORBITAL ANALYSIS ,Analytical Chemistry ,Delocalized electron ,Molecule ,AB INITIO MO CALCULATIONS ,Instrumentation ,Conformational isomerism ,Spectroscopy ,Sulfonamides ,Chemistry ,Otras Ciencias Químicas ,Ciencias Químicas ,Atomic and Molecular Physics, and Optics ,Anti-Bacterial Agents ,Crystallography ,INFRARED AND RAMAN SPECTROSCOPY ,Molecular vibration ,Quantum Theory ,CRYSTAL X-RAY DIFFRACTION STRUCTURE ,CIENCIAS NATURALES Y EXACTAS ,Monoclinic crystal system ,Natural bond orbital - Abstract
The molecular structure of 2,2,2-trichloroethoxysulfonamide, CCl3CH2OSO2NH2, has been determined in the solid state by X-ray diffraction data and in the gas phase by ab initio (MP2) and DFT calculations. The substance crystallizes in the monoclinic P21/c space group with a = 9.969(3) Å, b = 22.914(6) Å, c = 7.349(2) Å, β = 91.06(3)°, and Z = 8 molecules per unit cell. There are two independent, but closely related molecular conformers in the crystal asymmetric unit. They only differ in the angular orientation of the sulfonamide (single bondSO2NH2) group. The conformers are arranged in the lattice as center-symmetric Nsingle bondH⋯O(sulf)-bonded dimers. Neighboring dimers are linked through further Nsingle bondH⋯O(sulf) bonds giving rise to a crystal layered structure. The solid state infrared and Raman spectra have been recorded and the observed bands assigned to the molecular vibration modes. Also, the thermal behavior of the substance was investigated by TG–DT analysis. The stability of the molecule arising from hyper-conjugative interactions and charge delocalization has been analyzed using natural bond (NBO) analysis. Fil: Gil, Diego Mauricio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Piro, Oscar Enrique. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Física La Plata. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Instituto de Física La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Departamento de Física; Argentina Fil: Echeverría, Gustavo Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Física La Plata. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Instituto de Física La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Departamento de Física; Argentina Fil: Tuttolomondo, María Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Instituto de Química del Noroeste. Universidad Nacional de Tucuman. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Ben Altabef, Aída. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina
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- 2013
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9. Interaction of S-methyl methanethiosulfonate with DPPC bilayer
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Marcelo Puiatti, Aida Ben Altabef, Maria Eliana Defonsi Lestard, M.E. Tuttolomondo, Santiago Sánchez Cortez, Adriana B. Pierini, and S.B. Díaz
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Models, Molecular ,1,2-Dipalmitoylphosphatidylcholine ,Lipid Bilayers ,Static Electricity ,Analytical chemistry ,Spectrum Analysis, Raman ,Vibration ,Methyl methanethiosulfonate ,Analytical Chemistry ,chemistry.chemical_compound ,Nephelometry and Turbidimetry ,Spectroscopy, Fourier Transform Infrared ,Fourier transform infrared spectroscopy ,Spectroscopy ,Instrumentation ,Liposome ,Vesicle ,Bilayer ,Methyl Methanesulfonate ,Atomic and Molecular Physics, and Optics ,Membrane ,chemistry ,Dipalmitoylphosphatidylcholine ,Biophysics ,Hydrophobic and Hydrophilic Interactions - Abstract
The present study is a first step towards the investigation of S-methyl methanethiosulfonate (MMTS) interaction with membrane model systems like liposomes. In this paper, the interaction of MMTS with dipalmitoylphosphatidylcholine (DPPC) bilayers was studied by FTIR and SERS spectroscopy. Lysolipid effect on vesicle stability was studied. The results show that MMTS interacts to different extents with the phosphate and carbonyl groups of membranes in the gel and the liquid crystalline states. To gain a deeper insight into MMTS properties that may be potentially helpful in the design of new drugs with therapeutic effects, we performed theoretical studies that may be the basis for the design of their mode of action.
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- 2012
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10. Bis (trifluoromethyl) sulfone, CF3SO2CF3: Synthesis, vibrational and conformational properties
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Luis A. Ramos, Sonia E. Ulic, M.E. Defonsi Lestard, M.E. Tuttolomondo, and A. Ben Altabef
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Models, Molecular ,Spectrophotometry, Infrared ,Infrared ,Molecular Conformation ,Torsion, Mechanical ,Infrared spectroscopy ,Spectrum Analysis, Raman ,Vibration ,Analytical Chemistry ,Sulfone ,chemistry.chemical_compound ,symbols.namesake ,Computational chemistry ,Sulfones ,Instrumentation ,Conformational isomerism ,Spectroscopy ,Trifluoromethyl ,Chemistry ,Potential energy ,Atomic and Molecular Physics, and Optics ,Kinetics ,symbols ,Quantum Theory ,Thermodynamics ,Physical chemistry ,Raman spectroscopy ,Natural bond orbital - Abstract
Bis (trifluoromethyl) sulfone, CF(3)SO(2)CF(3), was obtained as a byproduct in the synthesis of CF(3)SO(2)SCF(3). The compound was characterized by infrared and Raman spectroscopy as well quantum chemical calculations. Quantum mechanical calculations indicate the possible existence of two conformers symmetrically equivalent with C(2) symmetry. The preference for the staggered form was studied using the total energy scheme and the natural bond orbital (NBO) partition scheme. Additionally, the total potential energy was deconvoluted using a sixfold decomposition in terms of a Fourier-type expansion, showing that the hyperconjugative effect was dominant in stabilizing the staggered conformer. Infrared and Raman spectra of CF(3)SO(2)CF(3) were obtained. Harmonic vibrational wavenumbers and a scaled force field were calculated, leading to a final root mean-square deviation of 7.8 cm(-1) when comparing experimental and calculated wavenumbers.
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- 2012
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11. Investigation of the gas-phase structure and rotational barrier of trimethylsilyl trifluoromethanesulfonate and comparison with covalent sulfonates
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M.E. Tuttolomondo, David W.H. Rankin, Maria Eliana Defonsi Lestard, Heather E. Robertson, Eduardo L. Varetti, Aida Ben Altabef, and Derek A. Wann
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Anomeric effect ,Chemistry ,Gas electron diffraction ,Organic Chemistry ,Ab initio ,Analytical Chemistry ,Inorganic Chemistry ,Crystallography ,chemistry.chemical_compound ,Trimethylsilyl trifluoromethanesulfonate ,Computational chemistry ,Ab initio quantum chemistry methods ,Conformational isomerism ,Spectroscopy ,Methyl trifluoromethanesulfonate ,Natural bond orbital - Abstract
The molecular structure of trimethylsilyl trifluoromethanesulfonate, CF3SO2OSi(CH3)3, has been determined in the gas phase from electron-diffraction data supplemented by ab initio (MP2) and DFT calculations using 6-31G(d), 6-311++G(d,p) and 6-311G++(3df,3pd) basis sets. Both experimental and theoretical data indicate that only one gauche conformer is possible by rotating about the O–S bond. The anomeric effect is a fundamental stereoelectronic interaction and presents a profound influence on the electronic geometry. We have investigated the origin of the anomeric effect by means of NBO and AIM analysis. A natural bond orbital analysis showed that the lpπ[O bonded to Si)] → σ*[C–S] hyperconjugative interaction favors the gauche conformation. In addition, comparison of the structural and stereoelectronic properties of the title molecule with those of silyl trifluoromethanesulfonate and methyl trifluoromethanesulfonate has been carried out.
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- 2010
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12. Structural and vibrational analysis of thymoquinone
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Ana Beatriz Raschi, M.E. Tuttolomondo, Elida Romano, A. Ben Altabef, and Alba M. Benavente
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Molecular Structure ,Spectrophotometry, Infrared ,Chemistry ,Atoms in molecules ,Molecular Conformation ,Spectrum Analysis, Raman ,Vibration ,Atomic and Molecular Physics, and Optics ,Analytical Chemistry ,Crystallography ,Ab initio quantum chemistry methods ,Computational chemistry ,Intramolecular force ,Spectroscopy, Fourier Transform Infrared ,Benzoquinones ,Molecule ,Density functional theory ,Instrumentation ,Conformational isomerism ,Spectroscopy ,Cis–trans isomerism ,Natural bond orbital - Abstract
The molecular structure of 2-isopropyl-5-methyl-1,4-benzoquinone, C(6)O(2)H(2) (CH(3))(3)CH, has been optimized using methods based on density functional theory (DFT) and Moller-Plesset second-order perturbation theory (MP2). As regards C(6)O(2)H(2) (CH(3))(3)CH, two populated conformations with C(1) (trans) and C(s) (cis) symmetries are obtained, the former being more stable than the latter. The theoretical data indicate that although both anti and cis conformers are possible by rotation about the C-C bond, the preferred conformation is trans. The effects governing the torsion barriers and preferred conformations were analyzed at B3LYP/6-311++G** level. The atoms in molecules (AIM) theory and natural bond orbital (NBO) analysis was applied to the cis and trans conformers in order to detect intramolecular contacts. Furthermore, the infrared spectra for the gas and solid phases and the Raman spectrum for the solid one, were recorded and the observed bands assigned to the vibrational modes.
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- 2010
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13. Gas-phase structure, rotational barrier and vibrational properties of trimethylsilyl trifluoroacetate CF3C(O)OSi(CH3)3: An experimental and computational study
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Eduardo L. Varetti, Heather E. Robertson, Maria Eliana Defonsi Lestard, David W.H. Rankin, Aida Ben Altabef, M.E. Tuttolomondo, and Derek A. Wann
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Steric effects ,Chemistry ,Organic Chemistry ,Ab initio ,Molecular orbital theory ,Dihedral angle ,Analytical Chemistry ,Inorganic Chemistry ,Computational chemistry ,Alkane stereochemistry ,Physical chemistry ,Conformational isomerism ,Spectroscopy ,Basis set ,Natural bond orbital - Abstract
The molecular structure of trimethylsilyl trifluoroacetate, CF 3 C(O)OSi(CH 3 ) 3 , has been determined in the gas phase from electron-diffraction data supplemented by ab initio (MP2) and DFT calculations using 6-31G(d), 6-311G(d,p), 6-311++G(d,p) and 6-311++G(3df,3pd) basis sets. Experimental data indicate that only one conformer, with C s symmetry [dihedral angle ϕ (CCOSi) = 180°, and all groups staggered], is observed in the gas phase. Theoretical data indicate that both this anti conformer and a gauche conformer, created by rotating about the C(O) O bond, are possible, although the preferred conformation is the staggered anti one. The torsional energies for different values of the CCOSi and COSiC dihedral angles have been calculated using the RHF, MP2 and B3LYP methods with the 6-311++G(d,p) basis set. For rotation around the CC OSi bond, a sixfold decomposition of the rotational barrier has been performed in terms of a Fourier-type expansion, enabling us to analyze the nature of the potential function, showing that the coefficients related to electrostatic interactions and steric effects are the dominant terms. The preference for the anti conformation was studied using the total-energy scheme, comparison of dipole moments, and the natural bond orbital partition scheme. The infrared spectra for the liquid and gas phases and the Raman spectrum for the liquid phase have also been recorded and the observed bands assigned to the vibrational normal modes. The experimental vibrational data, along with calculated theoretical force constants, were used to define a scaled quantum mechanical force field for the target system that enabled us to estimate the measured frequencies with a final root-mean-square deviation of 9.7 cm −1 .
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- 2010
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14. Experimental and theoretical structure and vibrational analysis of ethyl trifluoroacetate, CF3 CO2 CH2 CH3
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David W. H. Rankin, M.E. Tuttolomondo, Derek A. Wann, Maria Eliana Defonsi Lestard, Heather E. Robertson, and Aida Ben Altabef
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Quantitative Biology::Biomolecules ,Chemistry ,Ab initio ,Analytical chemistry ,Infrared spectroscopy ,symbols.namesake ,Electron diffraction ,Ab initio quantum chemistry methods ,symbols ,Molecule ,General Materials Science ,Raman spectroscopy ,Conformational isomerism ,Spectroscopy ,Natural bond orbital - Abstract
The molecular structure and conformational properties of ethyl trifluoroacetate, CF3CO2CH2CH3, were determined in the gas phase by electron diffraction, and vibrational spectroscopy (IR and Raman). The experimental investigations were supplemented by ab initio (MP2) and DFT quantum chemical calculations at different levels of theory. Experimental and theoretical methods result in two structures with Cs (anti–anti) and C1 (anti–gauche) symmetries, the former being slightly more stable than the latter. The electron-diffraction data are best fitted with a mixture of 56% anti–gauche and 44% anti–anti conformers. The conformational preference was also studied using the total energy scheme, and the natural bond orbital scheme. Also, the infrared spectra of CF3CO2CH2CH3 are reported for the gas, liquid and solid states, as is the Raman spectrum of the liquid. The comparison of experimental averaged IR spectra of Cs and C1 conformers provides evidence for the predicted conformations in the IR spectra. Harmonic vibrational wavenumbers and scaled force fields have been calculated for both conformers. Copyright © 2009 John Wiley & Sons, Ltd.
- Published
- 2009
- Full Text
- View/download PDF
15. Experimental and theoretical studies of the vibrations and structure of 2,2,2-trifluoroethyl trifluoroacetate, CF3CO2CH2CF3
- Author
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Eduardo L. Varetti, Maria Eliana Defonsi Lestard, Heather E. Robertson, David W.H. Rankin, Derek A. Wann, Aida Ben Altabef, and M.E. Tuttolomondo
- Subjects
Quantitative Biology::Biomolecules ,Chemistry ,Organic Chemistry ,Ab initio ,Analytical chemistry ,Infrared spectroscopy ,Molecular orbital theory ,Potential energy ,Analytical Chemistry ,Inorganic Chemistry ,Ab initio quantum chemistry methods ,Multiplicity (chemistry) ,Conformational isomerism ,Spectroscopy ,Natural bond orbital - Abstract
The molecular structure of 2,2,2-trifluoroethyl trifluoroacetate, CF3CO2CH2CF3, has been determined in the gas-phase from electron-diffraction data supplemented by ab initio (MP2) and DFT calculations using basis sets up to 6-311++G(d,p). Both experimental and theoretical data indicate that, although both structures with anti, anti (Cs) and anti, gauche (C1) conformations exist by rotating about the O C(H2) bond, the anti, anti structure is preferred. The difference in free energy was calculated to be 2.1 kJ mol−1 (Cs conformer lower in energy) and as the C1 conformer has a double multiplicity relative to the Cs conformer, the ratio of C1–Cs conformer was predicted to be 0.41: 0.59. This conformational preference was studied using the total energy scheme and the natural bond orbital partition scheme. Additionally, the total potential energy has been deconvoluted using six-fold decomposition in terms of a Fourier-type expansion. Infrared spectra of CF3CO2CH2CF3 have been obtained for the gaseous, liquid and solid phases and the Raman spectrum for the liquid phase. Harmonic vibrational frequencies and a scaled force field have been calculated, leading to a final root-mean-square deviation of 7.3 cm−1.
- Published
- 2009
- Full Text
- View/download PDF
16. Layered Crystal Structure and Vibrational Spectra of Sodium Trichloromethanesulfonate – An Eperimental and Theoretical Study
- Author
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Oscar E. Piro, Eduardo L. Varetti, A. Ben Altabef, and M.E. Tuttolomondo
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Inorganic Chemistry ,Diffraction ,symbols.namesake ,Chemistry ,Analytical chemistry ,symbols ,Ionic bonding ,Infrared spectroscopy ,Crystal structure ,Raman spectroscopy ,Quantum chemistry ,Monoclinic crystal system ,Ion - Abstract
The NaCCl3SO3.H2O salt was studied by X-ray diffraction methods, which show that it crystallizes in the monoclinic P21/c space group, with a = 12.558(5), b = 5.814(3), c = 10.679(5) A, β = 103.76(3)°, and Z = 4. The solid is arranged into neutral slabs, parallel to each other and to the crystal bc plane, being each slab held mainly by ionic forces. An infrared and Raman study of that compound was also performed and an assignment of the observed spectral features was made, correcting results previously reported by other authors. The vibrational study was supported by quantum chemistry calculations at the DFT level, from which the theoretical frequencies of vibration and a force field for the anion were obtained. That force field was subsequently adjusted to reproduce the set of experimental frequencies.
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- 2006
- Full Text
- View/download PDF
17. Infrared and Raman spectra and quantum chemistry calculations for 2,2,2-trifluoroethyl trichloromethanesulfonate, CCl3SO2OCH2CF3
- Author
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A. Ben Altabef, Amparo Navarro, Eduardo L. Varetti, and M.E. Tuttolomondo
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Alkanesulfonates ,Spectrophotometry, Infrared ,Infrared ,Chemistry ,Molecular Conformation ,Analytical chemistry ,Infrared spectroscopy ,Spectrum Analysis, Raman ,Quantum chemistry ,Molecular physics ,Atomic and Molecular Physics, and Optics ,Analytical Chemistry ,symbols.namesake ,Spectroscopy, Fourier Transform Infrared ,symbols ,Molecule ,Density functional theory ,Chloroform ,Raman spectroscopy ,Instrumentation ,Scaling ,Root-mean-square deviation ,Spectroscopy - Abstract
The infrared spectra of CCl3SO2OCH2CF3 were obtained in the gaseous, liquid and solid states and complemented with the Raman spectrum of the liquid. Quantum chemistry calculations using the density functional theory (DFT) were used to predict the most stable geometry and conformation of the studied molecule. The harmonic vibrational frequencies and force field were also calculated. Comparison with related molecules and with the predicted frequencies was used as the basis for the assignment of the observed spectral features. Subsequently, a scaling of the original force field by means of a least square procedure was made in order to reproduce as well as possible the experimental frequencies, leading to a final root mean square deviation of 10.6 cm−1.
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- 2005
- Full Text
- View/download PDF
18. Vibrational spectroscopy and conformation of S-ethyl thioacetate: CH3COSCH2CH3 and comparison with -C(O)S- and -C(O)O- compounds
- Author
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Maria Eliana Defonsi Lestard, M.E. Tuttolomondo, and Aida Ben Altabef
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Models, Molecular ,Infrared ,Ab initio ,Molecular Conformation ,Torsion, Mechanical ,Infrared spectroscopy ,Dihedral angle ,Acetates ,Química Inorgánica y Nuclear ,Spectrum Analysis, Raman ,Vibration ,Analytical Chemistry ,symbols.namesake ,RAMAN ,Computational chemistry ,C(O)S and C(O)O compounds ,Spectroscopy, Fourier Transform Infrared ,Molecule ,Instrumentation ,Spectroscopy ,Quantitative Biology::Biomolecules ,Ethane ,Chemistry ,Ciencias Químicas ,INFRARED ,Atomic and Molecular Physics, and Optics ,Crystallography ,Electron diffraction ,S-ETHYL THIOACETATE ,symbols ,Quantum Theory ,Thermodynamics ,Raman spectroscopy ,CIENCIAS NATURALES Y EXACTAS ,Natural bond orbital - Abstract
The molecular structure and conformational properties of S-ethyl thioacetate, CH3COSCH2CH3, were determined in the gas phase by electron diffraction and vibrational spectroscopy (IR and Raman). The experimental investigations were supplemented by ab initio (MP2) and DFT quantum chemical calculations at different levels of theory. Theoretical methods reveal two structures with Cs (anti, anti) and C1 (anti, gauche) symmetries. The infrared and Raman spectra for different phases were also recorded and the bands observed assigned to the vibrational normal modes. Liquid Raman and infrared spectra in liquid and gaseous state measurements revealed the presence of two conformations anti, anti (Cs symmetry) and anti, gauche (C1 symmetry). The study was completed using natural bond orbital (NBO) analysis. We have also analyzed the internal rotation barrier about the C(O)SCC dihedral angle using a variety of computational approaches and natural bond orbital (NBO) analyses to understand the nature of the potential function and to explain the preferred conformation of the molecule. Fil: Defonsi Lestard, Maria Eliana. Universidad Nacional de Tucumán; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Tucumán. Instituto de Quimica del Noroeste; Argentina Fil: Tuttolomondo, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Tucumán. Instituto de Quimica del Noroeste; Argentina. Universidad Nacional de Tucumán; Argentina Fil: Ben Altabef, Aida. Universidad Nacional de Tucumán; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Tucumán. Instituto de Quimica del Noroeste; Argentina
- Published
- 2014
19. Theoretical and experimental study of a novel psolaren derivate: (E)-9-(3,4 dimethylpent-2-enyloxy)-7H-furo[3,2-g]chromen-7-one
- Author
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M.E. Tuttolomondo, M.P. Fernández-Liencres, S. Turbay, Mario A. Fortuna, Oscar E. Piro, Gustavo A. Echeverría, and Amparo Navarro
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Models, Molecular ,FOUROCOUMARIN ,Física Atómica, Molecular y Química ,ASTERACEAE ,Ciencias Físicas ,Ab initio ,Analytical chemistry ,Infrared spectroscopy ,Crystal structure ,Asteraceae ,Spectrum Analysis, Raman ,Quantum chemistry ,NATURAL BOND ORBITAL ANALYSIS ,Analytical Chemistry ,X-Ray Diffraction ,Furocoumarins ,Spectroscopy, Fourier Transform Infrared ,Molecule ,Instrumentation ,Spectroscopy ,Chemistry ,Furocoumarin ,PSORALEN ,DFT CALCULATIONS ,Atomic and Molecular Physics, and Optics ,Crystallography ,INFRARED AND RAMAN SPECTROSCOPY ,Molecular vibration ,SRUCTURAL X-RAY DIFFRACTION ,CIENCIAS NATURALES Y EXACTAS ,Natural bond orbital - Abstract
A new psolaren derivate, (E)-9-(3,4-dimethylpent-2-enyloxy)-7H-furo[3,2-g]chromen-7-one, has been isolated and characterized by experimental and theoretical methodologies. The solid state molecular structure has been determined by X-ray diffraction methods. The substance crystallizes in the monoclinic P21/c space group with a = 4.2389(5), b = 26.090(3), c = 12.482(1) Å, b = 96.990(9), and Z = 4 molecules per unit cell. The crystal structure shows the molecule fused phenyl and hetero-cycle rings to be coplanarwith each other. Ab initio(MP2) and DFT methods have been used to predict the molecular structure in the isolated molecule approximation and the results compared with the experimental data. The MP2/6-311G(d,p) calculations are in good agreement with the X-ray results. The calculatedHOMO?LUMOenergy gap shows that the intra-molecular charge transfer could easily occur, a prediction closely related to the observed bioactivity of this new compound. In addition, the infrared absorption and Raman dispersion spectra were recorded and an assignment of the observed spectral features to molecular vibrations was made. The vibrational study was assisted by quantum chemistry calculations at theMP2and DFT level, which provided theoretical mode frequencies. The study was completed by natural bond orbital (NBO) analysis. Fil: Turbay, S.. Universidad Nacional de Tucuman. Facultad de Agronomia y Zootecnia. Departamento de Cs. Basicas; Argentina Fil: Piro, Oscar Enrique. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Física La Plata. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Instituto de Física La Plata; Argentina Fil: Echeverría, Gustavo Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Física La Plata. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Instituto de Física La Plata; Argentina Fil: Navarro, A.. Universidad de Jaén; España Fil: Fernández Liencres, M.P.. Universidad de Jaén; España Fil: Fortuna, Antonio Mario. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Tucuman. Facultad de Agronomia y Zootecnia. Departamento de Cs. Basicas; Argentina Fil: Tuttolomondo, María Eugenia. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química Física; Argentina
- Published
- 2014
20. DFT calculations of structure and vibrational properties of 2,2,2-trichloroethylacetate, CH(3)CO(2)CH(2)CCl(3)
- Author
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Diego M. Gil, M.E. Tuttolomondo, and Aida Ben Altabef
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Models, Molecular ,STRUCTURE ,Ab initio ,Analytical chemistry ,Molecular Conformation ,Infrared spectroscopy ,2,2,2- TRICHLOROETHYLACETATE ,Spectrum Analysis, Raman ,Analytical Chemistry ,symbols.namesake ,Ab initio quantum chemistry methods ,Spectroscopy, Fourier Transform Infrared ,Hydrocarbons, Chlorinated ,Molecule ,Instrumentation ,Conformational isomerism ,Spectroscopy ,Ethane ,Chemistry ,Otras Ciencias Químicas ,Ciencias Químicas ,DFT CALCULATIONS ,Atomic and Molecular Physics, and Optics ,Symmetry (physics) ,symbols ,Physical chemistry ,VIBRATIONAL PROPERTIES ,Raman spectroscopy ,CIENCIAS NATURALES Y EXACTAS ,Natural bond orbital - Abstract
The molecular structure and conformational properties of 2,2,2-trichloroethylacetate, CH3CO2CH2CCl3, were determined by ab initio (MP2) and DFT quantum chemical calculations at different levels of theory. The theoretical study was complemented with experimental measurements such as IR and Raman spectroscopy. The experimental and calculations confirm the presence of two conformers, one with anti, gauche conformation (C1 symmetry) and another with anti, anti form (Cs symmetry). The conformational preference was studied using the total energy scheme, NBO and AIM analysis. The infrared spectra of CH3CO2CH2CCl3 are reported in the liquid and solid phases and the Raman spectrum in liquid phase. Using calculated frequencies as a guide, evidence for both C1 and Cs conformers is obtained in the IR and Raman spectra. Fil: Gil, Diego Mauricio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Tuttolomondo, María Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina Fil: Ben Altabef, Aída. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Química del Noroeste. Universidad Nacional de Tucumán. Facultad de Bioquímica, Química y Farmacia. Instituto de Química del Noroeste; Argentina
- Published
- 2013
21. Experimental and theoretical vibrational study of 2,2,2-trifluoroethyl trifluoromethanesulfonate, CF3SO2OCH2CF3
- Author
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M.E. Tuttolomondo, A. Ben Altabef, L.E. Fernández, Amparo Navarro, and Eduardo L. Varetti
- Subjects
Mesylates ,Models, Molecular ,Spectrophotometry, Infrared ,Chemistry ,Analytical chemistry ,Infrared spectroscopy ,Spectrum Analysis, Raman ,Quantum chemistry ,Molecular physics ,Atomic and Molecular Physics, and Optics ,Analytical Chemistry ,symbols.namesake ,Ab initio quantum chemistry methods ,symbols ,Density functional theory ,Raman spectroscopy ,Instrumentation ,Root-mean-square deviation ,Scaling ,Trifluoromethanesulfonate ,Spectroscopy - Abstract
The infrared spectra of 2,2,2-trifluoroethyl trifluoromethanesulfonate (CF 3 SO 2 OCH 2 CF 3 ) were obtained in the gaseous, liquid and solid states as well as the Raman spectrum of the liquid. Quantum chemistry calculations using the density functional theory were used to predict the most stable geometry and conformation of the studied molecule. Subsequently, the harmonic vibrational frequencies and force field were calculated. An assignment of the observed spectral features made after comparison with the related molecules and with the predicted frequencies was used as the basis of a scaling of the original force field in order to reproduce as well as possible the experimental frequencies. With this purpose a set of scale factors was calculated by a least square procedure, leading to a final root mean square deviation (RMSD) of 9.7 cm −1 .
- Published
- 2004
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