1. Light scattering microscopy measurements of single nuclei compared with GPU-accelerated FDTD simulations
- Author
-
Sven Simon, Steffen Kieß, Thomas Rothe, Alwin Kienle, and Julian Stark
- Subjects
0301 basic medicine ,Nanostructure ,Light ,Computer science ,CHO Cells ,01 natural sciences ,Light scattering ,Spectral line ,010309 optics ,03 medical and health sciences ,Mice ,Optics ,Cricetulus ,Cricetinae ,0103 physical sciences ,Microscopy ,Animals ,Scattering, Radiation ,Radiology, Nuclear Medicine and imaging ,Cell Nucleus ,Radiological and Ultrasound Technology ,Scattering ,business.industry ,Finite-difference time-domain method ,Domain decomposition methods ,3T3 Cells ,Computational physics ,030104 developmental biology ,Single-Cell Analysis ,business ,Refractive index ,Algorithms - Abstract
Single cell nuclei were investigated using two-dimensional angularly and spectrally resolved scattering microscopy. We show that even for a qualitative comparison of experimental and theoretical data, the standard Mie model of a homogeneous sphere proves to be insufficient. Hence, an accelerated finite-difference time-domain method using a graphics processor unit and domain decomposition was implemented to analyze the experimental scattering patterns. The measured cell nuclei were modeled as single spheres with randomly distributed spherical inclusions of different size and refractive index representing the nucleoli and clumps of chromatin. Taking into account the nuclear heterogeneity of a large number of inclusions yields a qualitative agreement between experimental and theoretical spectra and illustrates the impact of the nuclear micro- and nanostructure on the scattering patterns.
- Published
- 2016