1. Chromatin loop organization of the junb locus in mouse dendritic cells
- Author
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Frédérique Brockly, Tiphanie Gomard, Tamara Salem, Gabriel Moquet-Torcy, Thierry Forné, Franck Court, Marc Piechaczyk, Institut de Génétique Moléculaire de Montpellier (IGMM), and Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)
- Subjects
Lipopolysaccharides ,Transcriptional Activation ,JUNB ,Animals Cell Line Chromatin/*chemistry Dendritic Cells/chemistry/enzymology/*metabolism Enhancer Elements ,Gene Regulation, Chromatin and Epigenetics ,Biology ,Cell Line ,Histones ,Mice ,03 medical and health sciences ,0302 clinical medicine ,hemic and lymphatic diseases ,Genetics ,Animals ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Negative elongation factor ,Downstream Enhancer ,Enhancer ,Transcription factor ,030304 developmental biology ,0303 health sciences ,Genetic Genetic Loci Histones/analysis Humans Lipopolysaccharides/pharmacology Mice Nucleic Acid Conformation RNA Polymerase II/analysis Transcription Factors/biosynthesis/*genetics Transcription Initiation Site *Transcriptional Activation ,Promoter ,Dendritic Cells ,DSIF ,Molecular biology ,Chromatin ,Enhancer Elements, Genetic ,Genetic Loci ,030220 oncology & carcinogenesis ,Nucleic Acid Conformation ,RNA Polymerase II ,Transcription Initiation Site ,Transcription Factors - Abstract
The junb gene behaves as an immediate early gene in bacterial lipopolysaccharide (LPS)-stimulated dendritic cells (DCs), where its transient transcriptional activation is necessary for the induction of inflammatory cytokines. junb is a short gene and its transcriptional activation by LPS depends on the binding of NF-kappaB to an enhancer located just downstream of its 3' UTR. Here, we have addressed the mechanisms underlying the transcriptional hyper-reactivity of junb. Using transfection and pharmacological assays to complement chromatin immunoprecipitation analyses addressing the localization of histones, polymerase II, negative elongation factor (NELF)-, DRB sensitivity-inducing factor (DSIF)- and Positive Transcription Factor b complexes, we demonstrate that junb is a RNA Pol II-paused gene where Pol II is loaded in the transcription start site domain but poorly active. Moreover, High salt-Recovered Sequence, chromosome conformation capture (3C)- and gene transfer experiments show that (i) junb is organized in a nuclear chromatin loop bringing into close spatial proximity the upstream promoter region and the downstream enhancer and (ii) this configuration permits immediate Pol II release on the junb body on binding of LPS-activated NF-kappaB to the enhancer. Thus, our work unveils a novel topological framework underlying fast junb transcriptional response in DCs. Moreover, it also points to a novel layer of complexity in the modes of action of NF-kappaB.
- Published
- 2013
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