1. Development and characterization of a DNA aptamer for MLL-AF9 expressing acute myeloid leukemia cells using whole cell-SELEX
- Author
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Kaylin G. Earnest, Mark Wunderlich, James C. Mulloy, Erin M. McConnell, Bahareh Hosseinpour, Maria C. DeRosa, Melissa J. Chee, Bianca S. M. Bono, Eman M. Hassan, William G. Willmore, and Edward J. Merino
- Subjects
Oncogene Proteins, Fusion ,Aptamer ,Science ,Ligands ,Article ,Flow cytometry ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,medicine ,Humans ,Fibroblast ,Cytotoxicity ,Cells, Cultured ,030304 developmental biology ,Cancer ,0303 health sciences ,Multidisciplinary ,Oncogene ,medicine.diagnostic_test ,Chemistry ,SELEX Aptamer Technique ,Myeloid leukemia ,DNA ,Aptamers, Nucleotide ,Fetal Blood ,Molecular biology ,3. Good health ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Medicine ,Primer (molecular biology) ,Analytical chemistry ,Systematic evolution of ligands by exponential enrichment ,Myeloid-Lymphoid Leukemia Protein - Abstract
Current classes of cancer therapeutics have negative side effects stemming from off-target cytotoxicity. One way to avoid this would be to use a drug delivery system decorated with targeting moieties, such as an aptamer, if a targeted aptamer is available. In this study, aptamers were selected against acute myeloid leukemia (AML) cells expressing the MLL-AF9 oncogene through systematic evolution of ligands by exponential enrichment (SELEX). Twelve rounds of SELEX, including two counter selections against fibroblast cells, were completed. Aptamer pools were sequenced, and three candidate sequences were identified. These sequences consisted of two 23-base primer regions flanking a 30-base central domain. Binding studies were performed using flow cytometry, and the lead sequence had a binding constant of 37.5 + / − 2.5 nM to AML cells, while displaying no binding to fibroblast or umbilical cord blood cells at 200 nM. A truncation study of the lead sequence was done using nine shortened sequences, and showed the 5′ primer was not important for binding. The lead sequence was tested against seven AML patient cultures, and five cultures showed binding at 200 nM. In summary, a DNA aptamer specific to AML cells was developed and characterized for future drug-aptamer conjugates.
- Published
- 2021