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We present the hardware and software systems implementing autonomous operation, distributed real-time monitoring, and control for the EBEX instrument. EBEX is a NASA-funded balloon-borne microwave polarimeter designed for a 14 day Antarctic flight that circumnavigates the pole. To meet its science goals the EBEX instrument autonomously executes several tasks in parallel: it collects attitude data and maintains pointing control in order to adhere to an observing schedule; tunes and operates up to 1920 TES bolometers and 120 SQUID amplifiers controlled by as many as 30 embedded computers; coordinates and dispatches jobs across an onboard computer network to manage this detector readout system; logs over 3~GiB/hour of science and housekeeping data to an onboard disk storage array; responds to a variety of commands and exogenous events; and downlinks multiple heterogeneous data streams representing a selected subset of the total logged data. Most of the systems implementing these functions have been tested during a recent engineering flight of the payload, and have proven to meet the target requirements. The EBEX ground segment couples uplink and downlink hardware to a client-server software stack, enabling real-time monitoring and command responsibility to be distributed across the public internet or other standard computer networks. Using the emerging dirfile standard as a uniform intermediate data format, a variety of front end programs provide access to different components and views of the downlinked data products. This distributed architecture was demonstrated operating across multiple widely dispersed sites prior to and during the EBEX engineering flight., Comment: 11 pages, to appear in Proceedings of SPIE Astronomical Telescopes and Instrumentation 2010; adjusted metadata for arXiv submission

We describe the cryostat and supporting electronics for the EBEX experiment. EBEX is a balloon-borne polarimeter designed to measure the B-mode polarization of the cosmic microwave background radiation. The instrument includes a 1.5 meter Gregorian-type telescope and 1432 bolometric transition edge sensor detectors operating at 0.3 K. Electronics for monitoring temperatures and controlling cryostat refrigerators is read out over CANbus. A timing system ensures the data from all subsystems is accurately synchronized. EBEX completed an engineering test flight in June 2009 during which the cryogenics and supporting electronics performed according to predictions. The temperatures of the cryostat were stable, and an analysis of a subset of the data finds no scan synchronous signal in the cryostat temperatures. Preparations are underway for an Antarctic flight., Comment: 11 pages, 6 figures, Proceedings of the 12th Marcel Grossman Conference