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The architectures of multiple planet systems can provide valuable constraints on models of planet formation, including orbital migration, and excitation of orbital eccentricities and inclinations. NASA's Kepler mission has identified 1235 transiting planet candidates (Borcuki et al 2011). The method of transit timing variations (TTVs) has already confirmed 7 planets in two planetary systems (Holman et al. 2010; Lissauer et al. 2011a). We perform a transit timing analysis of the Kepler planet candidates. We find that at least ~12% of planet candidates currently suitable for TTV analysis show evidence suggestive of TTVs, representing at least ~65 TTV candidates. In all cases, the time span of observations must increase for TTVs to provide strong constraints on planet masses and/or orbits, as expected based on n-body integrations of multiple transiting planet candidate systems (assuming circular and coplanar orbits). We find that the fraction of planet candidates showing TTVs in this data set does not vary significantly with the number of transiting planet candidates per star, suggesting significant mutual inclinations and that many stars with a single transiting planet should host additional non-transiting planets. We anticipate that Kepler could confirm (or reject) at least ~12 systems with multiple transiting planet candidates via TTVs. Thus, TTVs will provide a powerful tool for confirming transiting planets and characterizing the orbital dynamics of low-mass planets. If Kepler observations were extended to at least six years, then TTVs would provide much more precise constraints on the dynamics of systems with multiple transiting planets and would become sensitive to planets with orbital periods extending into the habitable zone of solar-type stars., Comment: accepted to ApJS, to appear in Kepler special issue; 35 pages incl. 6 figures & 6 tables, excl. 48 pages w/ 4 electronic only tables & 26 pages with additional figures; Additional large electronic only table at http://astro.ufl.edu/~eford/data/kepler/