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This paper investigates the consequences of ignoring the clustered data structure on allometric models. Clustered data, in the form of multiple trees sampled from multiple forest stands is commonly used to develop biomass allometric models. Of 102 reviewed papers published between 2012 and 2016 that reported biomass allometric models, 84 (82%) have used a clustered sampling design. However, in as many as 80% of these, the clustered data structure was ignored, potentially violating the independence assumption in ordinary least squares methods. The consequences of ignoring clustered data structure were empirically validated using two clustered biomass datasets (of 110 and 220 trees, with the cluster size of 5 and 10 trees respectively). We showed that when Intraclass Correlation Coefficient (ICC) was higher than zero, ignoring the clustered data structure returned underestimated standard errors, affecting further the confidence interval and t-test results. The underestimation level depended on ICC (which shows the variance proportion that was caused by the forest stand) and on cluster size (the number of trees sampled from one forest stand). We also showed that using first-order autocorrelation tests, such as the traditional Durbin-Watson statistic, to detect the autocorrelation due to clustered structure could be misleading as the test may show lack of autocorrelation even though ICC is different from zero. In conclusion, when ICC is higher than zero, ignoring the clustered data structure yields over-confident biomass predictions (due to underestimated confidence interval) and/or incorrect research conclusions (due to overestimated evidence against null hypothesis in t-test). Therefore, using a modelling approach that accounts for the hierarchical structure of the data is highly recommended when any form of clustering can be identified, even if the autocorrelation is not significant. [ABSTRACT FROM AUTHOR]

Population growth and climate change challenge our food and farming systems and provide arguments for an increased intensification of agriculture. A promising option is eco-functional intensification through organic farming, an approach based on using and enhancing internal natural resources and processes to secure and improve agricultural productivity, while minimizing negative environmental impacts. In this concept an active soil microbiota plays an important role for various soil based ecosystem services such as nutrient cycling, erosion control and pest and disease regulation. Several studies have reported a positive effect of organic farming on soil health and quality including microbial community traits. However, so far no systematic quantification of whether organic farming systems comprise larger and more active soil microbial communities compared to conventional farming systems was performed on a global scale. Therefore, we conducted a meta-analysis on current literature to quantify possible differences in key indicators for soil microbial abundance and activity in organic and conventional cropping systems. All together we integrated data from 56 mainly peer-reviewed papers into our analysis, including 149 pairwise comparisons originating from different climatic zones and experimental duration ranging from 3 to more than 100 years. Overall, we found that organic systems had 32% to 84% greater microbial biomass carbon, microbial biomass nitrogen, total phospholipid fatty-acids, and dehydrogenase, urease and protease activities than conventional systems. Exclusively the metabolic quotient as an indicator for stresses on microbial communities remained unaffected by the farming systems. Categorical subgroup analysis revealed that crop rotation, the inclusion of legumes in the crop rotation and organic inputs are important farming practices affecting soil microbial community size and activity. Furthermore, we show that differences in microbial size and activity between organic and conventional farming systems vary as a function of land use (arable, orchards, and grassland), plant life cycle (annual and perennial) and climatic zone. In summary, this study shows that overall organic farming enhances total microbial abundance and activity in agricultural soils on a global scale. [ABSTRACT FROM AUTHOR]

The cotton mealybug, Phenacoccus solenopsis Tinsley (Hemiptera: Pseudococcidae), is a serious invasive species that significantly damages plants of approximately 60 families around the world. It is originally from North America and has also been introduced to other continents. Our goals were to create a current and future potential global distribution map for this pest under climate change with MaxEnt software. We tested the hypothesis of niche conservatism for P. solenopsis by comparing its native niche in North America to its invasive niches on other continents using Principal components analyses (PCA) in R. The potentially suitable habitat for P. solenopsis in its native and non-native ranges is presented in the present paper. The results suggested that the mean temperature of the wettest quarter and the mean temperature of the driest quarter are the most important environmental variables determining the potential distribution of P. solenopsis. We found strong evidence for niche shifts in the realized climatic niche of this pest in South America and Australia due to niche unfilling; however, a niche shift in the realized climatic niche of this pest in Eurasian owing to niche expansion. [ABSTRACT FROM AUTHOR]

This paper presents a novel approach to incorporate the non-stationarities characterised in the GCM outputs, into the Predictor-Predictand Relationships (PPRs) in statistical downscaling models. In this approach, a series of 42 PPRs based on multi-linear regression (MLR) technique were determined for each calendar month using a 20-year moving window moved at a 1-year time step on the predictor data obtained from the NCEP/NCAR reanalysis data archive and observations of precipitation at 3 stations located in Victoria, Australia, for the period 1950–2010. Then the relationships between the constants and coefficients in the PPRs and the statistics of reanalysis data of predictors were determined for the period 1950–2010, for each calendar month. Thereafter, using these relationships with the statistics of the past data of HadCM3 GCM pertaining to the predictors, new PPRs were derived for the periods 1950–69, 1970–89 and 1990–99 for each station. This process yielded a non-stationary downscaling model consisting of a PPR per calendar month for each of the above three periods for each station. The non-stationarities in the climate are characterised by the long-term changes in the statistics of the climate variables and above process enabled relating the non-stationarities in the climate to the PPRs. These new PPRs were then used with the past data of HadCM3, to reproduce the observed precipitation. It was found that the non-stationary MLR based downscaling model was able to produce more accurate simulations of observed precipitation more often than conventional stationary downscaling models developed with MLR and Genetic Programming (GP). [ABSTRACT FROM AUTHOR]