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There are currently no vaccines or effective drugs to prevent the disorders caused by avian leukosis virus subgroup J (ALV-J). Hence, it is critical to identify potential biomarkers in ALV-J-infected chickens to prevent ALV-J-induced disorders. We hypothesized that ALV-J infection alters metabolic profile in chickens. In the present study, a nontargeted metabolomics approach based on liquid chromatography coupled with mass spectrometry (LC-MS) was used to find differential metabolites in plasma samples from ALV-J-infected chickens and healthy controls. The parametric statistical test (Student's t-test) and fold change analysis were used for univariate analysis. Multivariate statistical analyses included principal component analysis (PCA) and partial least squares-discriminant analysis (PLS-DA). The levels of methyl bromide, pyraclonil, hexaflumuron, lythidathion, 3-phosphoglycerol-glutathione, bis-4-nitrophenyl phosphate, 4-ketocyclophosphamide, oxidized photinus luciferin, phenyl sulfate, and aryl sulfate significantly decreased, whereas the levels of 2-methylthiobenzothiazole, irinotecan, methadone, 3-o-ethyl-l-ascorbic acid, and o-acetylneuraminic acid markedly increased in ALV-J-infected chickens as compared to those in healthy controls. These data provide metabolic evidence and potential biomarkers for ALV-J-induced alterations in plasma metabolism.

Background Chicken is one of the economically important poultry species. ALV-J has emerged as a serious cause of mortality and suboptimal performance of domestic chickens. The changes in the virome may contribute to pathogenesis. Thus, it is important to investigate the effects of ALV-J infection on the composition of virome in chicken.Results Our results indicated that the chicken gut virome contained a diverse range of viruses, and at the order, family, genus, and species levels, there was a significant difference in virome between the ALV-J-infected chickens and controls. The predominant order was Herpesvirales, accounting for more than 96% of the chicken gut virome. Furthermore, the relative abundance of Caudovirales in the controls was higher than that in the AVL-J-infected chickens. At the family level, the relative abundance of Herpesviridae, Myoviridae, Alloherpesviridae, and Genomoviridae was significantly altered in the AVL-J-infected chickens compared with the controls. Additionally, the relative abundance of 15 genera showed a significant difference between the AVL-J-infected chickens and controls. Interestingly, the relative abundance of 366 species showed significant differences between the AVL-J-infected chickens and controls.Conclusions Our results indicated that the chicken gut virome contained a diverse range of viruses from invertebrates, vertebrates, plants, and phages. Furthermore, at the order, family, and genus levels, AVL-J infection significantly altered the chicken gut virome composition. The results will increase our understanding of the viral diversity and the changes in chicken virome, with implications in chicken health.