1. BCALM (AC099524.1) Is a Human B Lymphocyte-Specific Long Noncoding RNA That Modulates B Cell Receptor-Mediated Calcium Signaling.
- Author
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Pyfrom SC, Quinn CC, Dorando HK, Luo H, and Payton JE
- Subjects
- A Kinase Anchor Proteins genetics, A Kinase Anchor Proteins immunology, Adult, Aged, Aged, 80 and over, B-Lymphocytes cytology, Calcium Signaling genetics, Cell Line, Cytoskeletal Proteins genetics, Cytoskeletal Proteins immunology, Female, Humans, Male, Middle Aged, Minor Histocompatibility Antigens genetics, Minor Histocompatibility Antigens immunology, Phospholipase C gamma genetics, Phospholipase C gamma immunology, Phospholipase D genetics, Phospholipase D immunology, Protein Tyrosine Phosphatase, Non-Receptor Type 6 genetics, Protein Tyrosine Phosphatase, Non-Receptor Type 6 immunology, Proto-Oncogene Proteins genetics, Proto-Oncogene Proteins immunology, RNA, Long Noncoding genetics, Receptors, Antigen, B-Cell genetics, B-Lymphocytes immunology, Calcium Signaling immunology, RNA, Long Noncoding immunology, Receptors, Antigen, B-Cell immunology
- Abstract
Of the thousands of long noncoding RNAs (lncRNA) identified in lymphocytes, very few have defined functions. In this study, we report the discovery and functional elucidation of a human B cell-specific lncRNA with high levels of expression in three types of B cell cancer and normal B cells. The AC099524.1 gene is upstream of the gene encoding the B cell-specific phospholipase C γ 2 ( PLCG2 ), a B cell-specific enzyme that stimulates intracellular Ca
2+ signaling in response to BCR activation. AC099524.1 (B cell-associated lncRNA modulator of BCR-mediated Ca+ signaling [BCALM]) transcripts are localized in the cytoplasm and, as expected, CRISPR/Cas9 knockout of AC099524.1 did not affect PLCG2 mRNA or protein expression. lncRNA interactome, RNA immunoprecipitation, and coimmunoprecipitation studies identified BCALM-interacting proteins in B cells, including phospholipase D 1 (PLD1), and kinase adaptor proteins AKAP9 (AKAP450) and AKAP13 (AKAP-Lbc). These two AKAP proteins form signaling complexes containing protein kinases A and C, which phosphorylate and activate PLD1 to produce phosphatidic acid (PA). BCR stimulation of BCALM-deficient B cells resulted in decreased PLD1 phosphorylation and increased intracellular Ca+ flux relative to wild-type cells. These results suggest that BCALM promotes negative feedback that downmodulates BCR-mediated Ca+ signaling by promoting phosphorylation of PLD1 by AKAP-associated kinases, enhancing production of PA. PA activates SHP-1, which negatively regulates BCR signaling. We propose the name BCALM for B-Cell Associated LncRNA Modulator of BCR-mediated Ca+ signaling. Our findings suggest a new, to our knowledge, paradigm for lncRNA-mediated modulation of lymphocyte activation and signaling, with implications for B cell immune response and BCR-dependent cancers., (Copyright © 2020 by The American Association of Immunologists, Inc.)- Published
- 2020
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