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Seed dormancy is an important factor regulating preharvest sprouting (PHS) but is a complex trait for genetic analysis. We previously identified a major quantitative trait locus (QTL) controlling seed dormancy on the long arm of chromosome 4A (4AL) in common wheat. To transfer the QTL from the dormant lines ‘OS21-5’ and ‘Leader’ into the Japanese elite variety ‘Haruyokoi’, which has an insufficient level of seed dormancy, backcrossing was carried out through marker-assisted selection (MAS) using PCR-based codominant markers. Nineteen BC5F2 plants with homozygous alleles of ‘OS21-5’ or ‘Haruyokoi’ were developed and evaluated for seed dormancy under greenhouse conditions. The seeds harvested from plants with ‘OS21-5’ alleles showed a clearly high level of dormancy compared with seeds from plants with ‘Haruyokoi’ alleles. Additionally, the dormancy phenotype of BC3F3 seeds harvested from 128 BC3F2 plants with homozygous alleles of ‘Leader’ or ‘Haruyokoi’ showed a clear difference between these alleles. The QTL on 4AL confers a major gene, Phs1, which was mapped within a 2.6 cM region. The backcrossed lines developed in this study can be important sources for improving PHS resistance in Japanese wheat and for analyzing the mechanism of seed dormancy. MAS was useful for the development of near-isogenic lines in this complex trait, to facilitate the molecular dissection of genetic factors. [ABSTRACT FROM AUTHOR]