1. Conformational Flexibility of Cytokine-Like C-Module of Tyrosyl-tRNA Synthetase Monitored by Trp144 Intrinsic Fluorescence
- Author
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Mariya Kordysh and A. I. Kornelyuk
- Subjects
Models, Molecular ,Sociology and Political Science ,Protein Conformation ,Molecular Sequence Data ,Clinical Biochemistry ,In Vitro Techniques ,Biochemistry ,Fluorescence spectroscopy ,Bimolecular fluorescence complementation ,Tyrosine-tRNA Ligase ,Native state ,Animals ,Amino Acid Sequence ,Spectroscopy ,Quenching (fluorescence) ,Chemistry ,Protein dynamics ,Tryptophan ,TRNA binding ,Fluorescence ,Recombinant Proteins ,Clinical Psychology ,Crystallography ,Spectrometry, Fluorescence ,Biophysics ,Cytokines ,Thermodynamics ,Cattle ,Law ,Social Sciences (miscellaneous) - Abstract
The non-catalytic COOH-terminal module formed after proteolytic cleavage of full-length mammalian tyrosyl-tRNA synthetase displays dual function: tRNA binding ability and cytokine activity. With the aim to explore the intramolecular dynamics of C-module in solution we used fluorescence spectroscopy to study conformational changes of isolated protein. We used information from fluorescence spectra and computational model for characterization of a microenvironment of a single tryptophan residue (Trp144). Its fluorescence parameters and protection from quenching by Cs+ ions indicate the internal localization--buried into protein globule. The fluorescence quenching of Trp144 by acrylamide suggests rapid conformation dynamics of the C-module in nanosecond time scale. The temperature-induced conformational changes in the C-module were monitored by the fluorescence measurements of Trp144 emission and by red-edge excitation shift. An emission maximum shift up to approximately 349 nm and significant decrease of the red-edge shift effect at 37-52 degrees C indicated a major conformational transition of Trp144 from buried native state into highly relaxing polar solvent environment.
- Published
- 2006
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