59 results on '"Amit V. Pandey"'
Search Results
2. Loss of protein stability and function caused by a single point mutation (P228L) in the Cytochrome P450 Oxidoreductase
- Author
-
Maria Natalia Rojas Velazquez, Mathias Noebauer, and Amit V. Pandey
- Subjects
Genetics ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2022
- Full Text
- View/download PDF
3. Molecular Basis of CYP19A1 Deficiency in a 46,XX Patient With R550W Mutation in POR: Expanding the PORD Phenotype
- Author
-
Mónica Fernández-Cancio, Norio Kagawa, Núria Camats, Maria Natalia Rojas Velazquez, Sameer S Udhane, Shaheena Parween, Sara Benito-Sanz, Laura Audi, Christa E. Flück, Amit V. Pandey, and Juan-Pedro López-Siguero
- Subjects
Male ,medicine.medical_specialty ,46, XX Disorders of Sex Development ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,610 Medicine & health ,Context (language use) ,Compound heterozygosity ,medicine.disease_cause ,PORD ,Biochemistry ,Aromatase ,Endocrinology ,Internal medicine ,CYP17A1 ,congenital adrenal hyperplasia ,Humans ,Medicine ,Congenital adrenal hyperplasia ,Child ,CY19A1 ,Mutation ,Adrenal Hyperplasia, Congenital ,biology ,business.industry ,Virilization ,Biochemistry (medical) ,Prognosis ,medicine.disease ,POR ,Pedigree ,CYP21A2 ,Phenotype ,biology.protein ,Female ,medicine.symptom ,business ,Aromatase deficiency - Abstract
Context Mutations in cytochrome P450 oxidoreductase (POR) cause a form of congenital adrenal hyperplasia (CAH). We report a novel R550W mutation in POR identified in a 46,XX patient with signs of aromatase deficiency. Objective Analysis of aromatase deficiency from the R550W mutation in POR. Design, setting, and patient Both the child and the mother had signs of virilization. Ultrasound revealed the presence of uterus and ovaries. No defects in CYP19A1 were found, but further analysis with a targeted Disorders of Sexual Development NGS panel (DSDSeq.V1, 111 genes) on a NextSeq (Illumina) platform in Madrid and Barcelona, Spain, revealed compound heterozygous mutations c.73_74delCT/p.L25FfsTer93 and c.1648C > T/p.R550W in POR. Wild-type and R550W POR were produced as recombinant proteins and tested with multiple cytochrome P450 enzymes at University Children’s Hospital, Bern, Switzerland. Main outcome measure and Results POR-R550W showed 41% of the WT activity in cytochrome c and 7.7% activity for reduction of MTT. Assays of CYP19A1 showed a severe loss of activity, and CYP17A1 as well as CYP21A2 activities were also lost by more than 95%. Loss of CYP2C9, CYP2C19, and CYP3A4 activities was observed for the R550W-POR. Predicted adverse effect on aromatase activity as well as a reduction in binding of NADPH was confirmed. Conclusions Pathological effects due to POR-R550W were identified, expanding the knowledge of molecular pathways associated with aromatase deficiency. Screening of the POR gene may provide a diagnosis in CAH without defects in genes for steroid metabolizing enzymes.
- Published
- 2020
- Full Text
- View/download PDF
4. Synthesis and Structure-Activity Relationships of Novel Non-Steroidal CYP17A1 Inhibitors as Potential Prostate Cancer Agents
- Author
-
Tomasz M. Wróbel, Oksana Rogova, Katyayani Sharma, Maria Natalia Rojas Velazquez, Amit V. Pandey, Flemming Steen Jørgensen, Frederic S. Arendrup, Kasper L. Andersen, and Fredrik Björkling
- Subjects
Male ,endocrine system ,Prostate cancer ,Prostatic Neoplasms ,Steroid 17-alpha-Hydroxylase ,610 Medicine & health ,Biochemistry ,Structure-Activity Relationship ,Enzyme inhibition ,Cytochrome P450 17A1 ,PC-3 Cells ,CYP17A1 ,Humans ,cytochrome P450 17A1 ,prostate cancer ,enzyme inhibition ,Enzyme Inhibitors ,Molecular Biology - Abstract
Twenty new compounds, targeting CYP17A1, were synthesized, based on our previous work on a benzimidazole scaffold, and their biological activity evaluated. Inhibition of CYP17A1 is an important modality in the treatment of prostate cancer, which remains the most abundant cancer type in men. The biological assessment included CYP17A1 hydroxylase and lyase inhibition, CYP3A4 and P450 oxidoreductase (POR) inhibition, as well as antiproliferative activity in PC3 prostate cancer cells. The most potent compounds were selected for further analyses including in silico modeling. This combined effort resulted in a compound (comp 2, IC50 1.2 µM, in CYP17A1) with a potency comparable to abiraterone and selectivity towards the other targets tested. In addition, the data provided an understanding of the structure–activity relationship of this novel non-steroidal compound class.
- Published
- 2022
- Full Text
- View/download PDF
5. P450 Oxidoreductase Deficiency: Loss of Activity Caused by Protein Instability From a Novel L374H Mutation
- Author
-
Florence Roucher-Boulez, Delphine Mallet, Shaheena Parween, Christa E. Flück, Yves Morel, Amit V. Pandey, and Anne Lienhardt-Roussie
- Subjects
0301 basic medicine ,medicine.medical_specialty ,46, XX Disorders of Sex Development ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Context (language use) ,medicine.disease_cause ,Biochemistry ,03 medical and health sciences ,Endocrinology ,Cytochrome P-450 Enzyme System ,Oxidoreductase ,Internal medicine ,medicine ,Humans ,Congenital adrenal hyperplasia ,chemistry.chemical_classification ,Mutation ,biology ,Cytochrome c ,Endoplasmic reticulum ,Biochemistry (medical) ,Cytochrome P450 ,Infant ,POR Deficiency ,medicine.disease ,3. Good health ,030104 developmental biology ,chemistry ,biology.protein ,Female - Abstract
Context: P450 oxidoreductase (POR) is required for the activities of steroid-metabolizing cytochrome P450 enzymes in the endoplasmic reticulum. POR deficiency (PORD) is a form of congenital adrenal hyperplasia. Objective and Aim: Enzymatic and structural analysis of a novel L374H POR mutation from a patient with 46,XX disorder of sexual development. Design, Setting, Patient, and Intervention: The patient was a 46,XX girl with nonconsanguineous Turkish parents. She had virilized external genitalia at birth, a uterus and ovaries, and no sign of Antley-Bixler syndrome. The initial diagnosis was CYP21A2 deficiency with no mutations in CYP21A2, but POR mutations were found. Functional testing was done after producing recombinant POR proteins for analyzing enzymatic and structural properties. Main Outcome: Novel mutations were causing severe loss of POR activities for metabolism of steroids and small molecules. Results: The L374H mutation reduced activities by 80% in cytochrome c, 97% in thiazolyl blue tetrazolium bromide, and 86% in ferricyanide reduction assays. The catalytic efficiency of the 17 α-hydroxylation of progesterone and the 17,20-lyase reaction of 17-OH pregnenolone was decreased by 87 and 90%, respectively; 21-hydroxylation of progesterone was decreased by 96%, and androstenedione aromatization was decreased by 90%. Analysis of the mutant structure by molecular dynamics simulations revealed structural instability. Flavin release and fast proteolysis assays showed that the L374H mutant is less stable than wild-type POR, confirming the bioinformatics prediction. Conclusions: This is the first report of a mutation causing PORD by affecting protein stability that causes severe reduction in POR activities. Detailed characterization of individual mutations in POR is required for understanding novel molecular mechanisms causing PORD.
- Published
- 2021
6. Unstable argininosuccinate lyase in variant forms of the urea cycle disorder argininosuccinic aciduria
- Author
-
Véronique Rüfenacht, Sandra Eggimann, Amit V. Pandey, Liyan Hu, Jean-Marc Nuoffer, Cécile Balmer, Johannes Häberle, University of Zurich, and Häberle, Johannes
- Subjects
Models, Molecular ,2716 Genetics (clinical) ,Urea cycle disorder ,RNA Stability ,Mutant ,Molecular Sequence Data ,Argininosuccinic Aciduria ,Mutation, Missense ,610 Medicine & health ,Biology ,Transfection ,1311 Genetics ,Mutant protein ,Enzyme Stability ,Genetics ,medicine ,otorhinolaryngologic diseases ,Humans ,Amino Acid Sequence ,RNA, Messenger ,Gene ,Urea Cycle Disorders, Inborn ,Genetics (clinical) ,Wild type ,Temperature ,medicine.disease ,Argininosuccinate lyase ,Argininosuccinate Lyase ,3. Good health ,Arginase ,HEK293 Cells ,Biochemistry ,Argininosuccinic aciduria ,Amino Acid Substitution ,10036 Medical Clinic ,Nucleic Acid Conformation - Abstract
Loss of function of the urea cycle enzyme argininosuccinate lyase (ASL) is caused by mutations in the ASL gene leading to ASL deficiency (ASLD). ASLD has a broad clinical spectrum ranging from life-threatening severe neonatal to asymptomatic forms. Different levels of residual ASL activity probably contribute to the phenotypic variability but reliable expression systems allowing clinically useful conclusions are not yet available. In order to define the molecular characteristics underlying the phenotypic variability, we investigated all ASL mutations that were hitherto identified in patients with late onset or mild clinical and biochemical courses by ASL expression in human embryonic kidney 293 T cells. We found residual activities >3% of ASL wild type (WT) in nine of 11 ASL mutations. Six ASL mutations (p.Arg95Cys, p.Ile100Thr, p.Val178Met, p.Glu189Gly, p.Val335Leu, and p.Arg379Cys) with residual activities ≥16% of ASL WT showed no significant or less than twofold reduced Km values, but displayed thermal instability. Computational structural analysis supported the biochemical findings by revealing multiple effects including protein instability, disruption of ionic interactions and hydrogen bonds between residues in the monomeric form of the protein, and disruption of contacts between adjacent monomeric units in the ASL tetramer. These findings suggest that the clinical and biochemical course in variant forms of ASLD is associated with relevant residual levels of ASL activity as well as instability of mutant ASL proteins. Since about 30% of known ASLD genotypes are affected by mutations studied here, ASLD should be considered as a candidate for chaperone treatment to improve mutant protein stability.
- Published
- 2021
7. In silico and functional studies reveal novel loss-of-function variants of SRD5A2, but no variants explaining excess 5α-reductase activity
- Author
-
Efstathios Katharopoulos, Christa E. Flück, Amit V. Pandey, and Kay Sauter
- Subjects
Models, Molecular ,0301 basic medicine ,Protein Conformation ,Endocrinology, Diabetes and Metabolism ,In silico ,Clinical Biochemistry ,Single-nucleotide polymorphism ,Biology ,Androgen Excess ,Polymorphism, Single Nucleotide ,Biochemistry ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,3-Oxo-5-alpha-Steroid 4-Dehydrogenase ,Loss of Function Mutation ,medicine ,Humans ,Computer Simulation ,Amino Acid Sequence ,Molecular Biology ,Gene ,Phylogeny ,Genetics ,Adrenarche ,Membrane Proteins ,Cell Biology ,medicine.disease ,Polycystic ovary ,Undervirilization ,030104 developmental biology ,Gain of Function Mutation ,030220 oncology & carcinogenesis ,SRD5A2 ,Androgens ,Molecular Medicine ,Sequence Alignment - Abstract
Androgens are steroid hormones essential for human male and female development. Steroid reductases 5α (SRD5As) are key enzymes in androgen biosynthesis. Mutations in the human SRD5A2 are known to cause loss-of-function and severe 46,XY undervirilization. Gain-of-function variants have been suggested in androgen excess syndromes, but have not been found so far. Therefore we searched for gain-of-function mutations in the human SRD5A2 gene which might explain hyperandrogenic disorders such as the polycystic ovary syndrome, premature adrenarche and prostate cancer. We screened databases for candidate variants and characterised them in silico with the help of a novel SRD5A2 model. We selected 9 coding SNPs (A49T, R50A, P106L, P106A, N122A, L167S, R168C, P173S, R227Q) that have not been described in manifesting individuals, and assessed their enzyme kinetic properties in HEK293 cells. SRD5A2 activity was assessed by conversion of testosterone (T), progesterone (Prog) and androstenedione (Δ4A) to their 5α-reduced metabolites. Variants R50A and P173S showed partial activity with substrates T (34% and 28%) and Δ4A (37% and 22%). With substrate Prog variants P106L, P106A, L167S and R168C in addition showed partial activity (15% to 64%). Functional testing of all other variants showed loss-of-function. As predicted in our in silico analysis, all coding SNPs affected enzyme activity, however none of them showed gain-of-function. Thus excess 5α-reductase activity might be rather regulated at the (post)-transcriptional and/or post-translational level. However through this work seven new coding SNPs were characterised which might be of clinical relevance. It is possible that individuals carrying these SNPs show a minor phenotype that is not yet identified.
- Published
- 2019
- Full Text
- View/download PDF
8. Across kingdom biased CYP-mediated metabolism via small-molecule ligands docking on P450 oxidoreductase
- Author
-
Tomas Laursen, Cecilie Hurup Hansen, Matias E. Moses, Nikos S. Hatzakis, Yanet G. Bustamante, Birger Lindberg Møller, Sara Thodberg, Johannes Thomsen, Rita Del Giudice, Amit V. Pandey, Simon Storgård Jensen, Shaheena Parween, Flemming Jørgensen, Camilla Knudsen, Patricia Rodríguez Castaño, Philip M. Lund, and Magnus Berg Sletfjerding
- Subjects
chemistry.chemical_compound ,Metabolic pathway ,Natural product ,chemistry ,Biochemistry ,Docking (molecular) ,Single-molecule FRET ,Metabolism ,Ligand (biochemistry) ,Small molecule ,G protein-coupled receptor - Abstract
Metabolic control is mediated by the dynamic assemblies and function of multiple redox enzymes. A key element in these assemblies, the P450 oxidoreductase (POR), donates electrons and selectively activates numerous (>50 in humans and >300 in plants) cytochromes P450 (CYPs) controlling metabolism of drugs, steroids and xenobiotics in humans and natural product biosynthesis in plants. The mechanisms underlying POR-mediated CYP metabolism remain poorly understood and to date no ligand binding has been described to regulate the specificity of POR. Here, using a combination of computational modeling and functional assays, we identified ligands that dock on POR and bias its specificity towards CYP redox partners. Single molecule FRET studies revealed ligand docking to alter POR conformational sampling, which resulted in biased activation of metabolic cascades in whole cell assays. We propose the model of biased metabolism, a mechanism akin to biased signaling of GPCRs, where ligand docking on POR stabilizes different conformational states that are linked to distinct metabolic outcomes. Biased metabolism may allow designing pathway-specific therapeutics or personalized food suppressing undesired, disease related, metabolic pathways.
- Published
- 2020
- Full Text
- View/download PDF
9. Differential effects of variations in human P450 oxidoreductase on the aromatase activity of CYP19A1 polymorphisms R264C and R264H
- Author
-
Francesca Baj, Giovanna DiNardo, Shaheena Parween, Amit V. Pandey, Gianfranco Gilardi, and Chao Zhang
- Subjects
Models, Molecular ,0301 basic medicine ,Protein Conformation ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Cytochrome P450 ,Biochemistry ,Aromatase ,CYP19A1 ,Estrogen synthase ,P450 oxidoreductase ,Polymorphisms ,POR ,0302 clinical medicine ,Endocrinology ,Cytochrome P-450 Enzyme System ,610 Medicine & health ,chemistry.chemical_classification ,biology ,030220 oncology & carcinogenesis ,Molecular Medicine ,endocrine system ,Mutation, Missense ,Steroid biosynthesis ,Arginine ,Polymorphism, Single Nucleotide ,Structure-Activity Relationship ,03 medical and health sciences ,Cytochrome P-450 CYP1A1 ,Humans ,Histidine ,Cysteine ,Allele ,Molecular Biology ,Gene ,Adrenal Hyperplasia, Congenital ,Endoplasmic reticulum ,Androstenedione ,Cell Biology ,Monooxygenase ,Enzyme Activation ,030104 developmental biology ,Enzyme ,Amino Acid Substitution ,chemistry ,biology.protein - Abstract
Aromatase (CYP19A1) converts androgens into estrogens and is required for female sexual development and growth and development in both sexes. CYP19A1 is a member of cytochrome P450 family of heme-thiolate monooxygenases located in the endoplasmic reticulum and depends on reducing equivalents from the reduced nicotinamide adenine dinucleotide phosphate via the cytochrome P450 oxidoreductase coded byPOR. Both theCYP19A1andPORgenes are highly polymorphic, and mutations in both these genes are linked to disorders of steroid biosynthesis. We have previously shown that R264C and R264H mutations inCYP19A1, as well as mutations inPOR, result in a reduction of CYP19A1 activity. The R264C is a common polymorphic variant ofCYP19A1, with high frequency in Asian and African populations. Polymorphic alleles ofPORare found in all populations studied so far and, therefore, may influence activities ofCYP19A1allelic variants. So far, effects of variations inPORon enzymatic activities of allelic variants ofCYP19A1or any other steroid metabolizing cytochrome P450 proteins have not been studied. Here we are reporting the effects of three POR variants on the aromatase activities of two CYP19A1 variants, R264C and R264H. We used bacterially expressed and purified preparations of WT and variant forms of CYP19A1 and POR and constructed liposomes with embedded CYP19A1 and POR proteins and assayed the CYP19A1 activities using radiolabeled androstenedione as a substrate. With the WT-POR as a redox partner, the R264C-CYP19A1 showed only 15% of aromatase activity, but the R264H had 87% of aromatase activity compared to WT-CYP19A1. With P284L-POR as a redox partner, R264C-CYP19A1 lost all activity but retained 6.7% of activity when P284T-POR was used as a redox partner. The R264H-CYP19A1 showed low activities with both the POR-P284L as well as the POR-P284T. When the POR-Y607C was used as a redox partner, the R264C-CYP19A1 retained around 5% of CYP19A1 activity. Remarkably, The R264H-CYP19A1 had more than three-fold higher activity compared to WT-CYP19A1 when the POR-Y607C was used as the redox partner, pointing towards a beneficial effect. The slight increase in activity of R264C-CYP19A1 with the P284T-POR and the three-fold increase in activity of the R264H-CYP19A1 with the Y607C-POR point towards a conformational effect and role of protein-protein interaction governed by the R264C and R264H substitutions in the CYP19A1 as well as P284L, P284T and Y607C variants of POR. These studies demonstrate that the allelic variants of P450 when present with a variant form of POR may show different activities, and combined effects of variations in both the P450 enzymes as well as in the POR should be considered when genetic data are available. Recent trends in the whole-exome and whole-genome sequencing as diagnostic tools will permit combined evaluation of variations in multiple genes that are interdependent and may guide treatment options by adjusting therapeutic interventions based on laboratory analysis.
- Published
- 2019
- Full Text
- View/download PDF
10. Variability in human drug metabolizing cytochrome P450 CYP2C9, CYP2C19 and CYP3A5 activities caused by genetic variations in cytochrome P450 oxidoreductase
- Author
-
Shaheena Parween, Maria Natalia Rojas Velazques, Sameer S Udhane, and Amit V. Pandey
- Subjects
chemistry.chemical_classification ,Mutation ,Cytochrome P450 ,Metabolism ,CYP2C19 ,Biology ,POR Deficiency ,medicine.disease_cause ,Enzyme ,Biochemistry ,chemistry ,medicine ,biology.protein ,CYP2C9 ,Drug metabolism - Abstract
A broad spectrum of human diseases are caused by mutations in the NADPH cytochrome P450 oxidoreductase (POR). Cytochrome P450 proteins perform several reactions, including the metabolism of steroids, drugs, and other xenobiotics. In 2004 the first human patients with defects in POR were reported, and over 250 variations in POR are known. Information about the effects of POR variants on drug metabolizing enzymes is limited and has not received much attention. By analyzing the POR sequences from genomics databases, we identified potentially disease-causing variations and characterized these by in vitro functional studies using recombinant proteins. Proteins were expressed in bacteria and purified for activity assays. Activities of cytochrome P450 enzymes were tested in vitro using liposomes prepared with lipids into which P450 and P450 reductase proteins were embedded. Here we are reporting the effect of POR variants on drug metabolizing enzymes CYP2C9, CYP2C19, and CYP3A5 which are responsible for the metabolism of many drugs. POR Variants A115V, T142A, A281T, P284L, A287P, and Y607C inhibited activities of all P450 proteins tested. Interestingly, the POR variant Q153R showed a reduction of 20-50% activities with CYP2C9 and CYP2C19 but had a 400% increased activity with CYP3A5. The A287P is most common POR mutation found in patients of European origin, and significantly inhibited drug metabolism activities which has important consequences for monitoring and treatment of patients. In vitro, functional assays using recombinant proteins provide a useful model for establishing the metabolic effect of genetic mutations. Our results indicate that detailed knowledge about POR variants is necessary for correct diagnosis and treatment options for persons with POR deficiency and the role of changes in drug metabolism and toxicology due to variations in POR needs to be addressed.
- Published
- 2019
- Full Text
- View/download PDF
11. In silico and in vitro Studies of Human 5α‐reductase Type II Reveal New Loss of Function Variants
- Author
-
Amit V. Pandey, Efstathios Katharopoulos, Kay-Sara Sauter, and Christa E. Flück
- Subjects
Biochemistry ,Chemistry ,In silico ,Genetics ,Molecular Biology ,In vitro ,Loss function ,Biotechnology ,5α reductase - Published
- 2019
- Full Text
- View/download PDF
12. Changes in Drug Metabolizing Enzyme Cytochrome P450 CYP3A4 Activities Due to Polymorphisms in Human Cytochrome P450 Oxidoreductase
- Author
-
Amit V. Pandey, Shaheena Parween, and Sameer S Udhane
- Subjects
Drug metabolizing enzymes ,P450 oxidoreductase ,Biochemistry ,biology ,CYP3A4 ,Chemistry ,Genetics ,biology.protein ,Cytochrome P450 ,Molecular Biology ,Biotechnology ,Human cytochrome - Published
- 2019
- Full Text
- View/download PDF
13. Biochemical and Functional Characterization of a Novel Mutation in the NADPH Cytochrome P450 Oxidoreductase
- Author
-
Sara Benito-Sanz, Juan-Pedro López-Siguero, Norio Kagawa, Amit V. Pandey, Mónica Fernández-Cancio, Laura Audí, Sameer S Udhane, Christa E. Flück, Shaheena Parween, and Núria Camats
- Subjects
Biochemistry ,Chemistry ,NADPH Cytochrome P450 Oxidoreductase ,Genetics ,Molecular Biology ,Novel mutation ,Biotechnology - Published
- 2019
- Full Text
- View/download PDF
14. Isoform‐Dependent Effects of Cytochrome P450 Oxidoreductase Polymorphisms on Drug Metabolism by Cytochrome P450 Enzymes in Dogs
- Author
-
Michael H. Court, Stephanie E. Martinez, and Amit V. Pandey
- Subjects
Gene isoform ,chemistry.chemical_classification ,biology ,Chemistry ,Cytochrome p450 oxidoreductase ,Cytochrome P450 ,Biochemistry ,Enzyme ,Genetics ,biology.protein ,Molecular Biology ,Drug metabolism ,Biotechnology - Published
- 2019
- Full Text
- View/download PDF
15. Endoplasmic Reticulum Stress Enhances Mitochondrial Metabolic Activity in Mammalian Adrenals and Gonads
- Author
-
James L. Thomas, Jasmeet Kaur, Amit V. Pandey, William E Burak, Anna N. Walker, Himangshu S. Bose, Guy Petruzzelli, Manoj Prasad, Shirley A. Powell, and Randy M. Whittal
- Subjects
Male ,0301 basic medicine ,Cytoplasm ,3-Hydroxysteroid Dehydrogenases ,Mitochondrion ,Biology ,Mitochondrial Membrane Transport Proteins ,Phosphates ,Mice ,03 medical and health sciences ,Stress, Physiological ,Adrenal Glands ,Animals ,Translocase ,Gonads ,Molecular Biology ,Mammals ,030102 biochemistry & molecular biology ,Endoplasmic reticulum ,Steroidogenic acute regulatory protein ,Articles ,Cell Biology ,Endoplasmic Reticulum Stress ,Phosphoproteins ,Mitochondria ,030104 developmental biology ,Biochemistry ,Unfolded Protein Response ,Unfolded protein response ,biology.protein ,ATP–ADP translocase ,Intermembrane space ,Transcription Factor CHOP - Abstract
The acute response to stress consists of a series of physiological programs to promote survival by generating glucocorticoids and activating stress response genes that increase the synthesis of many chaperone proteins specific to individual organelles. In the endoplasmic reticulum (ER), short-term stress triggers activation of the unfolded protein response (UPR) module that either leads to neutralization of the initial stress or adaptation to it; chronic stress favors cell death. UPR induces expression of the transcription factor, C/EBP homology protein (CHOP), and its deletion protects against the lethal consequences of prolonged UPR. Here, we show that stress-induced CHOP expression coincides with increased metabolic activity. During stress, the ER and mitochondria come close to each other, resulting in the formation of a complex consisting of the mitochondrial translocase, translocase of outer mitochondrial membrane 22 (Tom22), steroidogenic acute regulatory protein (StAR), and 3β-hydroxysteroid dehydrogenase type 2 (3βHSD2) via its intermembrane space (IMS)-exposed charged unstructured loop region. Stress increased the circulation of phosphates, which elevated pregnenolone synthesis by 2-fold by increasing the stability of 3βHSD2 and its association with the mitochondrion-associated ER membrane (MAM) and mitochondrial proteins. In summary, cytoplasmic CHOP plays a central role in coordinating the interaction of MAM proteins with the outer mitochondrial membrane translocase, Tom22, to activate metabolic activity in the IMS by enhanced phosphate circulation.
- Published
- 2016
- Full Text
- View/download PDF
16. 3β-Isoobeticholic acid efficiently activates the farnesoid X receptor (FXR) due to its epimerization to 3α-epimer by hepatic metabolism
- Author
-
Eva Kudova, Miriama Hutníková, Josef Skoda, Amit V. Pandey, Petr Pavek, Alzbeta Stefela, Miroslav Kaspar, Milos Hroch, Martin Drastik, Ondrej Holas, Tomas Smutny, and Stanislav Micuda
- Subjects
Male ,0301 basic medicine ,Agonist ,medicine.drug_class ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Receptors, Cytoplasmic and Nuclear ,Trilostane ,Chenodeoxycholic Acid ,Biochemistry ,Cell Line ,Receptors, G-Protein-Coupled ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Isomerism ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Molecular Biology ,Obeticholic acid ,Cell Biology ,Metabolism ,G protein-coupled bile acid receptor ,Mice, Inbred C57BL ,030104 developmental biology ,Liver ,chemistry ,Nuclear receptor ,030220 oncology & carcinogenesis ,Molecular Medicine ,Farnesoid X receptor ,Epimer ,medicine.drug - Abstract
Bile acids (BAs) are important signaling molecules acting via the farnesoid X nuclear receptor (FXR) and the membrane G protein-coupled bile acid receptor 1 (GPBAR1). Besides deconjugation of BAs, the oxidoreductive enzymes of colonic bacteria and hepatocytes enable the conversion of BAs into their epimers or dehydrogenated forms. Obeticholic acid (OCA) is the first-in-class BA-derived FXR agonist approved for the treatment of primary biliary cholangitis. Herein, a library of OCA derivatives, including 7-keto, 6-ethylidene derivatives and 3β-epimers, was synthetized and investigated in terms of interactions with FXR and GPBAR1 in transaction assays and evaluated for FXR target genes expression in human hepatocytes and C57BL/6 mice. The derivatives were further subjected to cell-free analysis employing in silico molecular docking and a TR-FRET assay. The conversion of the 3βhydroxy epimer and its pharmacokinetics in mice were studied using LC-MS. We found that only the 3β-hydroxy epimer of OCA (3β-isoOCA) possesses significant activity to FXR in hepatic cells and mice. However, in a cell-free assay, 3β-isoOCA had about 9-times lower affinity to FXR than did OCA. We observed that 3β-isoOCA readily epimerizes to OCA in hepatocytes and murine liver. This conversion was significantly inhibited by the hydroxy-Δ5-steroid dehydrogenase inhibitor trilostane. In addition, we found that 3,7-dehydroobeticholic acid is a potent GPBAR1 agonist. We conclude that 3β-isoOCA significantly activates FXR due to its epimerization to the more active OCA by hepatic metabolism. Other modifications as well as epimerization on the C3/C7 positions and the introduction of 6-ethylidene in the CDCA scaffold abrogate FXR agonism and alleviate GPBAR1 activation.
- Published
- 2020
- Full Text
- View/download PDF
17. Changes in Steroids, Xenobiotics, and Drug‐Metabolism in Humans by Genetic Variations in NADPH Cytochrome P450 Oxidoreductase
- Author
-
Amit V. Pandey
- Subjects
chemistry.chemical_compound ,Biochemistry ,Chemistry ,NADPH Cytochrome P450 Oxidoreductase ,Genetic variation ,Genetics ,Xenobiotic ,Molecular Biology ,Drug metabolism ,Biotechnology - Published
- 2020
- Full Text
- View/download PDF
18. Impact of Common Polymorphic Variant A503V in POR on Drug Metabolism: Implications for POR Deficiency
- Author
-
Maria Natalia Rojas Velazquez, Amit V. Pandey, and Shaheena Parween
- Subjects
Genetics ,Biology ,POR Deficiency ,Molecular Biology ,Biochemistry ,Drug metabolism ,Biotechnology - Published
- 2020
- Full Text
- View/download PDF
19. Autosomal Dominant Growth Hormone Deficiency Due to a Novel c.178G>A Mutation in the GH1 Gene is Caused by Alternative Splicing to Produce a Small GH Isoform
- Author
-
Christine Ternand, Louise C. Gregory, Bradley S. Miller, Silvia Rihs, Shaheena Parween, Amit V. Pandey, and Mehul T. Dattani
- Subjects
Genetics ,Gene isoform ,Alternative splicing ,Mutation (genetic algorithm) ,medicine ,Biology ,medicine.disease ,Molecular Biology ,Biochemistry ,Gene ,Biotechnology ,Growth hormone deficiency - Published
- 2020
- Full Text
- View/download PDF
20. Altered Steroid and Drug Metabolism by a Cytochrome P450 Oxidoreductase Variant Found in Apparently Normal Population
- Author
-
Shaheena Parween, Florence Roucher-Boulez, Amit V. Pandey, and Y. Morel
- Subjects
0301 basic medicine ,medicine.medical_specialty ,medicine.medical_treatment ,Cytochrome p450 oxidoreductase ,Normal population ,Biology ,Biochemistry ,Steroid ,03 medical and health sciences ,030104 developmental biology ,Endocrinology ,Internal medicine ,Genetics ,medicine ,Molecular Biology ,Drug metabolism ,Biotechnology - Published
- 2018
- Full Text
- View/download PDF
21. Role of Protein-Protein Interactions in Metabolism: Genetics, Structure, Function, 2nd Edition
- Author
-
Amit V. Pandey, Wayne L. Backes, Ulrich M. Zanger, Colin J. Henderson, Michel Kranendonk, and Yuji Ishii
- Subjects
Pregnane X receptor ,biology ,Biochemistry ,Chemistry ,Structure function ,biology.protein ,Cytochrome P450 ,Metabolism ,UDP Glucuronosyltransferase ,Pharmacogenetics ,Drug metabolism ,Protein–protein interaction - Published
- 2018
- Full Text
- View/download PDF
22. Altered CYP19A1 and CYP3A4 Activities Due to Mutations A115V, T142A, Q153R and P284L in the Human P450 Oxidoreductase
- Author
-
Norio Kagawa, Amit V. Pandey, Sameer S Udhane, and Shaheena Parween
- Subjects
0301 basic medicine ,CYP3A4 ,cytochrome P450 ,Mutant ,Flavin mononucleotide ,610 Medicine & health ,Flavin group ,P450 oxidoreductase ,medicine.disease_cause ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,FMN binding ,medicine ,CYP19A1 ,Pharmacology (medical) ,Original Research ,Pharmacology ,Mutation ,biology ,lcsh:RM1-950 ,Wild type ,Cytochrome P450 ,Molecular biology ,POR ,030104 developmental biology ,protein–protein interaction ,lcsh:Therapeutics. Pharmacology ,Biochemistry ,chemistry ,030220 oncology & carcinogenesis ,biology.protein ,570 Life sciences ,polymorphisms ,Binding domain - Abstract
All cytochromes P450s in the endoplasmic reticulum rely on P450 oxidoreductase (POR) for their catalytic activities. Mutations in POR cause metabolic disorders of steroid hormone biosynthesis and affect certain drug metabolizing P450 activities. We studied mutations A115V, T142A, Q153R identified in the flavin mononucleotide (FMN) binding domain of POR that interacts with partner proteins and P284L located in the hinge region that is required for flexibility and domain movements in POR. Human wild type and mutant POR as well as CYP3A4 and CYP19A1 proteins in recombinant form were expressed in bacteria, and purified proteins were reconstituted in liposomes for enzyme kinetic assays. Quality of POR protein was checked by cytochrome c reduction assay as well as flavin content measurements. We found that proteins carrying mutations A115V, T142A located close to the FMN binding site had reduced flavin content compared to wild type POR and lost almost all activity to metabolize androstenedione via CYP19A1 and showed reduced CYP3A4 activity. The variant P284L identified from apparently normal subjects also had severe loss of both CYP19A1 and CYP3A4 activities, indicating this to be a potentially disease causing mutation. The mutation Q153R initially identified in a patient with disordered steroidogenesis showed remarkably increased activities of both CYP19A1 and CYP3A4 without any significant change in flavin content, indicating improved protein-protein interactions between POR Q153R and some P450 proteins. These results indicate that effects of mutations on activities of individual cytochromes P450 can be variable and a detailed analysis of each variant with different partner proteins is necessary to accurately determine the genotype-phenotype correlations of POR variants.
- Published
- 2017
- Full Text
- View/download PDF
23. NADPH P450 oxidoreductase: Structure, function, and pathology of diseases
- Author
-
Christa E. Flück and Amit V. Pandey
- Subjects
Models, Molecular ,Protein Conformation ,Molecular Sequence Data ,Context (language use) ,medicine.disease_cause ,Xenobiotics ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Humans ,Missense mutation ,Pharmacology (medical) ,Amino Acid Sequence ,Gene ,NADPH-Ferrihemoprotein Reductase ,030304 developmental biology ,Pharmacology ,chemistry.chemical_classification ,Genetics ,0303 health sciences ,Mutation ,Binding Sites ,Polymorphism, Genetic ,biology ,Cytochrome P450 ,POR Deficiency ,Musculoskeletal Abnormalities ,3. Good health ,Enzyme ,Pharmaceutical Preparations ,chemistry ,Biochemistry ,CYP17A1 ,030220 oncology & carcinogenesis ,biology.protein ,Antley-Bixler Syndrome Phenotype - Abstract
Cytochrome P450 oxidoreductase (POR) is an enzyme that is essential for multiple metabolic processes, chiefly among them are reactions catalyzed by cytochrome P450 proteins for metabolism of steroid hormones, drugs and xenobiotics. Mutations in POR cause a complex set of disorders that often resemble defects in steroid metabolizing enzymes 17α-hydroxylase, 21-hydroxylase and aromatase. Since our initial reports of POR mutations in 2004, more than 200 different mutations and polymorphisms in POR gene have been identified. Several missense variations in POR have been tested for their effect on activities of multiple steroid and drug metabolizing P450 proteins. Mutations in POR may have variable effects on different P450 partner proteins depending on the location of the mutation. The POR mutations that disrupt the binding of co-factors have negative impact on all partner proteins, while mutations causing subtle structural changes may lead to altered interaction with specific partner proteins and the overall effect may be different for each partner. This review summarizes the recent discoveries related to mutations and polymorphisms in POR and discusses these mutations in the context of historical developments in the discovery and characterization of POR as an electron transfer protein. The review is focused on the structural, enzymatic and clinical implications of the mutations linked to newly identified disorders in humans, now categorized as POR deficiency.
- Published
- 2013
- Full Text
- View/download PDF
24. Of marsupials and men: 'Backdoor' dihydrotestosterone synthesis in male sexual differentiation
- Author
-
Walter L. Miller, Christa E. Flück, Amit V. Pandey, and Anna Biason-Lauber
- Subjects
Male ,medicine.medical_specialty ,Gonad ,Sex Differentiation ,Disorders of Sex Development ,030209 endocrinology & metabolism ,Biology ,Genitalia, Male ,Biochemistry ,03 medical and health sciences ,Paracrine signalling ,0302 clinical medicine ,Endocrinology ,Internal medicine ,Testis ,medicine ,Humans ,Sex organ ,Disorders of sex development ,Molecular Biology ,Testosterone ,030304 developmental biology ,0303 health sciences ,Fetus ,Sexual differentiation ,Sexual Development ,Hydroxysteroid Dehydrogenases ,Dihydrotestosterone ,medicine.disease ,medicine.anatomical_structure ,Androgens ,medicine.drug - Abstract
Following development of the fetal bipotential gonad into a testis, male genital differentiation requires testicular androgens. Fetal Leydig cells produce testosterone that is converted to dihydrotestosterone in genital skin, resulting in labio-scrotal fusion. An alternative 'backdoor' pathway of dihydrotestosterone synthesis that bypasses testosterone has been described in marsupials, but its relevance to human biology has been uncertain. The classic and backdoor pathways share many enzymes, but a 3α-reductase, AKR1C2, is unique to the backdoor pathway. Human AKR1C2 mutations cause disordered sexual differentiation, lending weight to the idea that both pathways are required for normal human male genital development. These observations indicate that fetal dihydrotestosterone acts both as a hormone and as a paracrine factor, substantially revising the classic paradigm for fetal male sexual development.
- Published
- 2013
- Full Text
- View/download PDF
25. NADPH-cytochrome P450 oxidoreductase: roles in physiology, pharmacology, and toxicology
- Author
-
Todd D. Porter, Amit V. Pandey, Colin J. Henderson, Sebastien Ronseaux, Qing Yu Zhang, David S. Riddick, Lesley A. McLaughlin, Xinxin Ding, Christa E. Flück, Ling Zou, Jun Gu, Robert D. Finn, and C. Roland Wolf
- Subjects
Pharmacology ,Gene isoform ,0303 health sciences ,biology ,Pharmaceutical Science ,Flavoprotein ,Symposium Reports ,Phenotype ,Toxicology ,Heme oxygenase ,03 medical and health sciences ,0302 clinical medicine ,Biochemistry ,NADPH Cytochrome P450 Oxidoreductase ,030220 oncology & carcinogenesis ,Cytochrome b5 ,biology.protein ,Microsome ,Experimental biology ,030304 developmental biology - Abstract
This is a report on a symposium sponsored by the American Society for Pharmacology and Experimental Therapeutics and held at the Experimental Biology 2012 meeting in San Diego, California, on April 25, 2012. The symposium speakers summarized and critically evaluated our current understanding of the physiologic, pharmacological, and toxicological roles of NADPH–cytochrome P450 oxidoreductase (POR), a flavoprotein involved in electron transfer to microsomal cytochromes P450 (P450), cytochrome b5, squalene mono-oxygenase, and heme oxygenase. Considerable insight has been derived from the development and characterization of mouse models with conditional Por deletion in particular tissues or partial suppression of POR expression in all tissues. Additional mouse models with global or conditional hepatic deletion of cytochrome b5 are helping to clarify the P450 isoform- and substrate-specific influences of cytochrome b5 on P450 electron transfer and catalytic function. This symposium also considered studies using siRNA to suppress POR expression in a hepatoma cell–culture model to explore the basis of the hepatic lipidosis phenotype observed in mice with conditional deletion of Por in liver. The symposium concluded with a strong translational perspective, relating the basic science of human POR structure and function to the impacts of POR genetic variation on human drug and steroid metabolism.
- Published
- 2013
- Full Text
- View/download PDF
26. Vitamin D-Dependent Rickets Type 1 Caused by Mutations in CYP27B1 Affecting Protein Interactions With Adrenodoxin
- Author
-
Nina S. Ma, Adam Zalewski, Amit V. Pandey, Balazs Legeza, Christa E. Flück, and Nora E. Renthal
- Subjects
0301 basic medicine ,Vitamin ,Male ,medicine.medical_specialty ,Calcitriol ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,25-Hydroxyvitamin D3 1-alpha-hydroxylase ,Rickets ,Context (language use) ,Biology ,Compound heterozygosity ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Endocrinology ,Internal medicine ,medicine ,polycyclic compounds ,Humans ,Amino Acid Sequence ,Vitamin D ,610 Medicine & health ,Calcium metabolism ,Bone growth ,25-Hydroxyvitamin D3 1-alpha-Hydroxylase ,030102 biochemistry & molecular biology ,Sequence Homology, Amino Acid ,Biochemistry (medical) ,Adrenodoxin ,Infant, Newborn ,Infant ,medicine.disease ,Prognosis ,Vitamin D Deficiency ,030104 developmental biology ,chemistry ,embryonic structures ,Mutation ,570 Life sciences ,biology ,lipids (amino acids, peptides, and proteins) ,Female ,Familial Hypophosphatemic Rickets ,Biomarkers ,medicine.drug - Abstract
Context:CYP27B1 converts 25-hydroxyvitamin D3 to active 1,25-dihydroxyvitamin D3, playing a vital role in calcium homeostasis and bone growth. Vitamin D-dependent rickets type 1 (VDDR-1) is a rare autosomal recessive disorder caused by mutations in CYP27B1.Objective:The objective of the study was an enzymatic and structural analysis of mutations in a patient with calcipenic rickets.Design, Setting, Patient, and Intervention:Two siblings presented with calcipenic rickets and normal 1,25-dihydroxyvitamin D3 levels. CYP27B1 gene analysis showed compound heterozygous mutations confirming VDDR-1. We studied wild-type CYP27B1 and mutations H441Y and R459L by computational homology modeling, molecular dynamics simulations, and functional studies using a luciferase assay. The patients were successfully treated with calcitriol.Main Outcome:The main outcomes of the study were novel mutations leading to a severe loss of CYP27B1 activities for metabolism of 25-hydroxyvitamin D3.Results:Mitochondrial cytochrome P450s require adrenodoxin (FDX1) and adrenodoxin reductase. We created models of CYP27B1-FDX1 complex, which revealed negative effects of mutations H441Y and R459L. Upon structural analysis, near-identical folds, protein contact areas, and orientations of heme/iron-sulfur cluster suggested that both mutations may destabilize the CYP27B1-FDX1 complex by negating directional interactions with adrenodoxin. This system is highly sensitive to small local changes modulating the binding/dissociation of adrenodoxin, and electron-transporting efficiency might change with mutations at the surface. Functional assays confirmed this hypothesis and showed severe loss of activity of CYP27B1 by both mutations.Conclusions:This is the first report of mutations in CYP27B1 causing VDDR-1 by affecting protein-protein interactions with FDX1 that results in reduced CYP27B1 activities. Detailed characterization of mutations in CYP27B1 is required for understanding the novel molecular mechanisms causing VDDR-1.
- Published
- 2016
27. Genes and proteins of the alternative steroid backdoor pathway for dihydrotestosterone synthesis are expressed in the human ovary and seem enhanced in the polycystic ovary syndrome
- Author
-
Aurel Perren, Coya Tapia, José A. Galván, Christa E. Flück, Nesa Magdalena Marti, Michel Müller, Mafalda Trippel, and Amit V. Pandey
- Subjects
0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Adolescent ,medicine.drug_class ,030209 endocrinology & metabolism ,Ovary ,Biology ,Biochemistry ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Endocrinology ,Internal medicine ,Adrenal Glands ,Testis ,medicine ,Humans ,Child ,Molecular Biology ,Testosterone ,Hyperandrogenism ,Dihydrotestosterone ,Middle Aged ,Androgen ,medicine.disease ,Polycystic ovary ,3. Good health ,Biosynthetic Pathways ,030104 developmental biology ,SRD5A1 ,medicine.anatomical_structure ,Gene Expression Regulation ,Theca ,Female ,medicine.drug ,Polycystic Ovary Syndrome - Abstract
Recently, dihydrotestosterone biosynthesis through the backdoor pathway has been implicated for the human testis in addition to the classic pathway for testosterone (T) synthesis. In the human ovary, androgen precursors are crucial for estrogen synthesis and hyperandrogenism in pathologies such as the polycystic ovary syndrome is partially due to ovarian overproduction. However, a role for the backdoor pathway is only established for the testis and the adrenal, but not for the human ovary. To investigate whether the backdoor pathway exists in normal and PCOS ovaries, we performed specific gene and protein expression studies on ovarian tissues. We found aldo-keto reductases (AKR1C1-1C4), 5α-reductases (SRD5A1/2) and retinol dehydrogenase (RoDH) expressed in the human ovary, indicating that the ovary might produce dihydrotestosterone via the backdoor pathway. Immunohistochemical studies showed specific localization of these proteins to the theca cells. PCOS ovaries show enhanced expression, what may account for the hyperandrogenism.
- Published
- 2016
28. Effect of cysteamine on mutant ASL proteins with cysteine for arginine substitutions
- Author
-
Henk J. Blom, Liyan Hu, Corinne Inauen, Jean-Marc Nuoffer, Amit V. Pandey, Véronique Rüfenacht, Johannes Häberle, University of Zurich, and Häberle, Johannes
- Subjects
Models, Molecular ,0301 basic medicine ,Arginine ,Cell Survival ,Cysteamine ,Mutant ,610 Medicine & health ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,1311 Genetics ,Genetics ,Humans ,Cysteine ,Cysteine metabolism ,Pharmacology ,biology ,Lysine ,General Medicine ,Argininosuccinate Lyase ,Argininosuccinate lyase ,Molecular biology ,Enzyme assay ,Molecular Docking Simulation ,HEK293 Cells ,030104 developmental biology ,3004 Pharmacology ,Amino Acid Substitution ,Gene Expression Regulation ,Biochemistry ,chemistry ,Cell culture ,10036 Medical Clinic ,10076 Center for Integrative Human Physiology ,1313 Molecular Medicine ,biology.protein ,Molecular Medicine ,570 Life sciences ,030217 neurology & neurosurgery - Abstract
INTRODUCTION Cysteamine is used to treat cystinosis via the modification of cysteine residues substituting arginine in mutant proteins. OBJECTIVES We investigated the effect of cysteamine on mutant argininosuccinate lyase (ASL), the second most common defect in the urea cycle. METHODS In an established mammalian expression system, 293T cell lysates were produced after transfection with all known cysteine for arginine mutations in the ASL gene (p.Arg94Cys, p.Arg95Cys, p.Arg168Cys, p.Arg379Cys, and p.Arg385Cys), allowing testing of the effect of cysteamine over 48 h in the culture medium as well as for 1 h immediately prior to the enzyme assay. RESULTS Cysteamine at low concentrations showed no effect on 293T cell viability, ASL protein expression, or ASL activity when applied during cell culture. However, incubation of transfected cells with 0.05 mM cysteamine immediately before the enzyme assay resulted in increased ASL activity of p.Arg94Cys, p.Arg379Cys, and p.Arg385Cys by 64, 20, and 197 %, respectively, and this result was significant (p < 0.01). Cell lysates carrying p.Arg385Cys and treated with cysteamine recover enzyme activity that is similar to the untreated designed mutation p.Arg385Lys, providing circumstantial evidence for the assumed cysteamine-induced change of a cysteine to a lysine analogue. CONCLUSION Since 12 % of all known genotypes in ASL deficiency are affected by a cysteine for arginine mutation, we conclude that the potential of cysteamine or of related substances as remedy for this disease should be investigated further.
- Published
- 2016
29. P450 Oxidoreductase deficiency: Analysis of mutations and polymorphisms
- Author
-
Sameer S Udhane, Shaheena Parween, Christa E. Flück, Amit V. Pandey, and Fabian Z. Burkhard
- Subjects
0301 basic medicine ,Male ,Antley–Bixler syndrome ,Turkey ,Protein Conformation ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,DNA Mutational Analysis ,Endoplasmic Reticulum ,Biochemistry ,0302 clinical medicine ,Endocrinology ,Japan ,Genetics ,education.field_of_study ,Steroid 17-alpha-Hydroxylase ,Founder Effect ,3. Good health ,CYP17A1 ,030220 oncology & carcinogenesis ,Molecular Medicine ,Female ,Steroids ,Oxidation-Reduction ,Protein Binding ,Population ,Biology ,Molecular Dynamics Simulation ,White People ,03 medical and health sciences ,Imaging, Three-Dimensional ,Microsomes ,medicine ,Animals ,Humans ,Congenital adrenal hyperplasia ,Allele ,education ,Molecular Biology ,Gene ,Alleles ,NADPH-Ferrihemoprotein Reductase ,Binding Sites ,Polymorphism, Genetic ,Cytochrome P450 ,Genetic Variation ,Cell Biology ,medicine.disease ,030104 developmental biology ,Mutation ,Mutation testing ,biology.protein - Abstract
Cytochrome P450 oxidoreductase (POR) is required for metabolic reactions of steroid and drug metabolizing cytochrome P450 proteins located in endoplasmic reticulum. Mutations in POR cause a complex set of disorders resembling combined deficiencies of multiple steroid metabolizing enzymes. The P450 oxidoreductase deficiency (PORD) was first reported in patients with symptoms of defects in steroidogenic cytochrome P450 enzymes and ambiguous genitalia, and bone malformation features resembling Antley-Bixler syndrome. POR is now classified as a separate and rare form of congenital adrenal hyperplasia (CAH), which may cause disorder of sexual development (DSD). Since the initial description of PORD in 2004, a large number of POR mutations and polymorphisms have been described. In this report we have performed computational analysis of mutations and polymorphisms in POR linked to metabolism of steroids and xenobiotics and pathology of PORD from the reported cases. The mutations in POR that were identified in patients with disruption of steroidogenesis also have severe effects on cytochrome P450 proteins involved in metabolism of drugs. Different variations in POR show a range of diverse effects on different partner proteins that are often linked to the location of the particular variants. The variations in POR that cause defective binding of co-factors always have damaging effects on all partner proteins, while the mutations causing subtle structural changes may lead to altered interaction with partner proteins and the overall effect may be different for each individual partner. Computational analysis of available sequencing data and mutation analysis shows that Japanese (R457H), Caucasian (A287P) and Turkish (399-401) populations can be linked to unique founder mutations. Other mutations identified so far were identified as rare alleles or in single isolated reports. The common polymorphism of POR is the variant A503V which can be found in about 27% of alleles in general population but there are remarkable differences among different sub populations.
- Published
- 2016
30. Impact on CYP19A1 activity by mutations in NADPH cytochrome P450 oxidoreductase
- Author
-
Christa E. Flück and Amit V. Pandey
- Subjects
0301 basic medicine ,Male ,DNA, Complementary ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Mutant ,030209 endocrinology & metabolism ,Endoplasmic Reticulum ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Aromatase ,medicine ,Humans ,Congenital adrenal hyperplasia ,Molecular Biology ,Alleles ,NADPH-Ferrihemoprotein Reductase ,chemistry.chemical_classification ,Binding Sites ,Polymorphism, Genetic ,biology ,Adrenal Hyperplasia, Congenital ,Endoplasmic reticulum ,Wild type ,Cytochrome P450 ,Genetic Variation ,Estrogens ,Cell Biology ,Metabolism ,medicine.disease ,Lipids ,Recombinant Proteins ,Kinetics ,030104 developmental biology ,Enzyme ,chemistry ,Mutation ,biology.protein ,Molecular Medicine ,Steroid 11-beta-Hydroxylase ,Female ,Steroids ,Oxidation-Reduction - Abstract
Cytochrome P450 aromatase (CYP19A1), in human placenta metabolizes androgens to estrogens and uses reduced nicotinamide adenine dinucleotide phosphate through cytochrome P450 oxidoreductase (POR) for the energy requirements of its metabolic activities. Mutations in the human POR lead to congenital adrenal hyperplasia due to loss of activities of several steroid metabolizing enzymatic reactions conducted by the cytochrome P450 proteins located in the endoplasmic reticulum. Effect of POR mutations on different P450 activities depend on individual partner proteins. In this report we have studied the impact of mutations found in the POR on the enzymatic activity of CYP19A1. We expressed wild type as well mutant human POR proteins in bacteria and purified the recombinant proteins, which were then used in an in vitro reconstitution system in combination with CYP19A1 and lipids for enzymatic analysis. We found that several mutations as well as polymorphisms in human POR can cause reduction of CYP19A1 activity. This would affect metabolism of estrogens in people with variations of POR allele. The POR mutants Y181D and R616X were found to have no activity in supporting CYP19A1 reactions. The POR mutations Y607C and delF646 showed a loss of 60-90% activity and two polymorphic forms of POR, R316W and G413S showed similar to WT activity. One POR variant, Q153R had almost double the activity of WT. Loss of CYP19A1 activity may contribute to disordered steroidogenesis in female patients with POR mutations as well as in mothers with POR variants carrying a male child.
- Published
- 2016
31. Clinical and biochemical consequences of p450 oxidoreductase deficiency
- Author
-
Christa E, Flück and Amit V, Pandey
- Subjects
Electron Transport ,Models, Molecular ,Bone Development ,Pregnancy ,Mutation ,Infant, Newborn ,Humans ,Female ,Antley-Bixler Syndrome Phenotype ,Biochemistry ,Models, Biological ,NADPH-Ferrihemoprotein Reductase - Abstract
Patients with P450 oxidoreductase (POR) deficiency typically present with adrenal insufficiency, genital anomalies and bony malformations resembling the Antley-Bixler craniosynostosis syndrome. Since our first report in 2004, more than 40 POR mutations have been identified in over 65 patients. POR is the obligate electron donor to all microsomal P450 enzymes, including the steroidogenic enzymes CYP17A1, CYP21A2 and CYP19A1. POR deficiency may cause disordered sexual development manifested as genital undervirilization in 46, XY newborns as well as overvirilization in those who are 46, XX. This may be explained by impaired aromatization of fetal androgens that may cause maternal virilization and low urinary estriol levels during pregnancy. In addition, the alternate 'backdoor' pathway of androgen biosynthesis, which leads to dihydrotestosterone production bypassing androstenedione and testosterone, may also play a role. Functional assays studying the effects of POR mutations on steroidogenesis showed that several POR variants impaired CYP17A1, CYP21A2 and CYP19A1 activities to different degrees, indicating that each POR variant must be studied separately for each potential target P450 enzyme. POR variants may also affect skeletal development and drug metabolism. As most drugs are metabolized by hepatic microsomal P450 enzymes, studies of the impact of POR mutations on drug-metabolizing P450s are particularly important.
- Published
- 2011
- Full Text
- View/download PDF
32. Deletion of P399_E401 in NADPH cytochrome P450 oxidoreductase results in partial mixed oxidase deficiency
- Author
-
Gaby Hofer, Amit V. Pandey, Christa E. Flück, Delphine Mallet, Dinane Samara-Boustani, Michel Polak, Juliane Léger, and Yves Morel
- Subjects
46, XX Disorders of Sex Development ,Protein Conformation ,Mutant ,Biophysics ,Biology ,medicine.disease_cause ,Biochemistry ,Hydroxylation ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Aromatase ,medicine ,Humans ,Molecular Biology ,030304 developmental biology ,NADPH-Ferrihemoprotein Reductase ,Sequence Deletion ,chemistry.chemical_classification ,0303 health sciences ,Mutation ,Cytochrome c ,Infant ,Steroid 17-alpha-Hydroxylase ,Cell Biology ,Metabolism ,Amino acid ,chemistry ,CYP17A1 ,030220 oncology & carcinogenesis ,Child, Preschool ,biology.protein ,Female ,Steroid 21-Hydroxylase - Abstract
P450 oxidoreductase (POR) is the electron donor for all microsomal P450s including steroidogenic enzymes CYP17A1, CYP19A1 and CYP21A2. We found a novel POR mutation P399_E401del in two unrelated Turkish patients with 46,XX disorder of sexual development. Recombinant POR proteins were produced in yeast and tested for their ability to support steroid metabolizing P450 activities. In comparison to wild-type POR, the P399_E401del protein was found to decrease catalytic efficiency of 21-hydroxylation of progesterone by 68%, 17α-hydroxylation of progesterone by 76%, 17,20-lyase action on 17OH-pregnenolone by 69%, aromatization of androstenedione by 85% and cytochrome c reduction activity by 80%. Protein structure analysis of the three amino acid deletion P399_E401 revealed reduced stability and flexibility of the mutant. In conclusion, P399_E401del is a novel mutation in POR that provides valuable genotype-phenotype and structure-function correlation for mutations in a different region of POR compared to previous studies. Characterization of P399_E401del provides further insight into specificity of different P450s for interaction with POR as well as nature of metabolic disruptions caused by more pronounced effect on specific P450s like CYP17A1 and aromatase.
- Published
- 2011
- Full Text
- View/download PDF
33. Growth hormone (GH) deficiency type II: a novel GH-1 gene mutation (GH-R178H) affecting secretion and action
- Author
-
Vibor Petkovic, Michela Godi, Andrée Eblé, Primus E. Mullis, Charles R. Buchanan, Mehul T. Dattani, Christa E. Flück, Didier Lochmatter, and Amit V. Pandey
- Subjects
medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Provocation test ,Context (language use) ,030209 endocrinology & metabolism ,CHO Cells ,Biology ,Gene mutation ,Molecular Dynamics Simulation ,Biochemistry ,Short stature ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Endocrinology ,Cricetulus ,Translational Highlights from Jcem ,Internal medicine ,Cricetinae ,medicine ,STAT5 Transcription Factor ,Animals ,Humans ,Child ,Molecular Biology ,Cells, Cultured ,030304 developmental biology ,0303 health sciences ,030219 obstetrics & reproductive medicine ,Human Growth Hormone ,Biochemistry (medical) ,Bone age ,General Medicine ,Receptors, Somatotropin ,Janus Kinase 2 ,Growth hormone secretion ,Somatropin ,Zinc ,Mutation ,IGHD ,Female ,medicine.symptom - Abstract
Context and Objective Main features of the autosomal dominant form of GH deficiency (IGHD II) include markedly reduced secretion of GH combined with low concentrations of IGF-I leading to short stature. Design, Setting, and Patients A female patient presented with short stature (height −6.0 sd score) and a delayed bone age of 2 yr at the chronological age of 5 yr. Later, at the age of 9 yr, GHD was confirmed by standard GH provocation test, which revealed subnormal concentrations of GH and a very low IGF-I. Genetic analysis of the GH-1 gene revealed the presence of a heterozygous R178H mutation. Interventions and Results AtT-20 cells coexpressing both wt-GH and GH-R178H showed a reduced GH secretion after forskolin stimulation compared with the cells expressing only wt-GH, supporting the diagnosis of IGHD II. Because reduced GH concentrations found in the circulation of our untreated patient could not totally explain her severe short stature, functional characterization of the GH-R178H performed by studies of GH receptor binding and activation of the Janus kinase-2/signal transducer and activator of transcription-5 pathway revealed a reduced binding affinity of GH-R178H for GH receptor and signaling compared with the wt-GH. Conclusion This is the first report of a patient suffering from short stature caused by a GH-1 gene alteration affecting not only GH secretion (IGHD II) but also GH binding and signaling, highlighting the necessity of functional analysis of any GH variant, even in the alleged situation of IGHD II.
- Published
- 2010
- Full Text
- View/download PDF
34. Modeling of human P450 oxidoreductase structure by in silico mutagenesis and MD simulation
- Author
-
Primus E. Mullis, Amit V. Pandey, and Christa E. Flück
- Subjects
Models, Molecular ,Cytochrome ,Protein Conformation ,In silico ,Molecular Sequence Data ,Molecular Dynamics Simulation ,Biochemistry ,Homology (biology) ,Cofactor ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Side chain ,Animals ,Humans ,Amino Acid Sequence ,Molecular Biology ,NADPH-Ferrihemoprotein Reductase ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,Reproducibility of Results ,Cytochrome P450 ,Rats ,Amino acid ,Enzyme ,chemistry ,Mutagenesis ,030220 oncology & carcinogenesis ,biology.protein ,Sequence Alignment - Abstract
P450 oxidoreductase (POR) is the obligate electron donor for microsomal cytochrome P450s and mutations in POR cause several metabolic disorders. We have modeled the structure of human P450 oxidoreductase by in silico amino acid replacements in the rat POR crystal structure. The rat POR has 94% homology with human POR and 38 amino acids were replaced to make its sequence identical to human POR. Several rounds of molecular dynamic simulations refined the model and removed structural clashes from side chain alterations of replaced amino acids. This approach has the advantage of keeping the cofactor contacts and structural features of the core enzyme intact which could not be achieved by homology based approaches. The final model from our approach was of high quality and compared well with experimentally determined structures of other PORs. This model will be used for analyzing the structural implications of mutations and polymorphisms in human POR.
- Published
- 2009
- Full Text
- View/download PDF
35. The Crystal Structure of the Platelet Activator Aggretin Reveals a Novel (αβ)2 Dimeric Structure
- Author
-
Kenneth J. Clemetson, Alexei Navdaev, Evangelos Papagrigoriou, Jeannine M. Clemetson, Amit V. Pandey, Elizabeth Hooley, and Jonas Emsley
- Subjects
Membrane Glycoproteins ,Molecular model ,Chemistry ,Stereochemistry ,Dimer ,Convulxin ,Viper Venoms ,Crystal structure ,Crystallography, X-Ray ,Biochemistry ,Protein Structure, Secondary ,Protein Structure, Tertiary ,chemistry.chemical_compound ,Tetramer ,Docking (molecular) ,Mutation ,Animals ,Humans ,Lectins, C-Type ,Protein quaternary structure ,Binding site ,Dimerization ,Protein Binding - Abstract
Aggretin is a C-type lectin purified from Calloselasma rhodostoma snake venom. It is a potent activator of platelets, resulting in a collagen-like response by binding and clustering platelet receptor CLEC-2. We present here the crystal structure of aggretin at 1.7 A which reveals a unique tetrameric quaternary structure. The two alphabeta heterodimers are arranged through 2-fold rotational symmetry, resulting in an antiparallel side-by-side arrangement. Aggretin thus presents two ligand binding sites on one surface and can therefore cluster ligands in a manner reminiscent of convulxin and flavocetin. To examine the molecular basis of the interaction with CLEC-2, we used a molecular modeling approach of docking the aggretin alphabeta structure with the CLEC-2 N-terminal domain (CLEC-2N). This model positions the CLEC-2N structure face down in the "saddle"-shaped binding site which lies between the aggretin alpha and beta lectin-like domains. A 2-fold rotation of this complex to generate the aggretin tetramer reveals dimer contacts for CLEC-2N which bring the N- and C-termini into the proximity of each other, and a series of contacts involving two interlocking beta-strands close to the N-terminus are described. A comparison with homologous lectin-like domains from the immunoreceptor family reveals a similar but not identical dimerization mode, suggesting this structure may represent the clustered form of CLEC-2 capable of signaling across the platelet membrane.
- Published
- 2008
- Full Text
- View/download PDF
36. Modulation of human CYP19A1 activity by mutant NADPH P450 oxidoreductase
- Author
-
Christa E. Flück, Petra Kempná, Primus E. Mullis, Gaby Hofer, and Amit V. Pandey
- Subjects
Models, Molecular ,endocrine system ,Mutant ,Reductase ,Biology ,medicine.disease_cause ,Potassium Chloride ,Electron Transport ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Aromatase ,medicine ,Humans ,Molecular Biology ,030304 developmental biology ,NADPH-Ferrihemoprotein Reductase ,0303 health sciences ,Mutation ,Binding Sites ,Steroid 17-alpha-Hydroxylase ,General Medicine ,Hydrogen-Ion Concentration ,POR Deficiency ,Molecular biology ,3. Good health ,Protein Structure, Tertiary ,Biochemistry ,CYP17A1 ,030220 oncology & carcinogenesis ,NADPH binding ,Flux (metabolism) ,Drug metabolism - Abstract
Mutations in NADPH P450 oxidoreductase (POR) cause a broad spectrum of human disease with abnormalities in steroidogenesis. We have studied the impact of P450 reductase mutations on the activity of CYP19A1. POR supported CYP19A1 activity with a calculated Km of 126 nm for androstenedione and a Vmax of 1.7 pmol/min. Mutations R457H and V492E located in the FAD domain of POR that disrupt electron transfer caused a complete loss of CYP19A1 activity. The A287P mutation of POR decreased the activities of CYP17A1 by 60-80% but had normal CYP19A1 activity. Molecular modeling and protein docking studies suggested that A287P is involved in the interaction of POR:CYP17A1 but not in the POR:CYP19A1 interaction. Mutations C569Y and V608F in the NADPH binding domain of POR had 49 and 28% of activity of CYP19A1 compared with normal reductase and were more sensitive to the amount of NADPH available for supporting CYP19A1 activity. Substitution of NADH for NADPH had a higher impact on C569Y and V608F mutants of POR. Similar effects were obtained at low/high (5.5/8.5) pH, but using octanol to limit the flux of electrons from POR to CYP19A1 inhibited activity supported by all variants. High molar ratios of KCl also reduced the CYP19A1 supporting activities of C569Y and V608F mutants of POR to a greater extent compared to normal POR and A287P mutant. Because POR supports many P450s involved in steroidogenesis, bone formation, and drug metabolism, variations in the effects of POR mutations on specific enzyme activities may explain the broad clinical spectrum of POR deficiency.
- Published
- 2007
- Full Text
- View/download PDF
37. IGHD II: A Novel GH-1 Gene Mutation (GH-L76P) Severely Affects GH Folding, Stability, and Secretion
- Author
-
Maria Consolata Miletta, Shaheena Parween, Andrée Eblé, Primus-Eugen Mullis, Amit V. Pandey, Christa E. Flück, and Marco Janner
- Subjects
Male ,medicine.medical_specialty ,Heterozygote ,Protein Folding ,Protein Conformation ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Mutant ,Mutation, Missense ,Context (language use) ,Biology ,Gene mutation ,Biochemistry ,Short stature ,Loss of heterozygosity ,Mice ,Endocrinology ,Pregnancy ,Internal medicine ,medicine ,Missense mutation ,Animals ,Humans ,Family ,Child ,Codon ,Human Growth Hormone ,Biochemistry (medical) ,Colforsin ,Infant, Newborn ,Computational Biology ,Infant ,Growth hormone secretion ,Body Height ,Pedigree ,Amino Acid Substitution ,Child, Preschool ,IGHD ,Female ,medicine.symptom - Abstract
The autosomal dominant form of GH deficiency (IGHD II) is characterized by markedly reduced GH secretion combined with low concentrations of IGF-1 leading to short stature.Structure-function analysis of a missense mutation in the GH-1 gene converting codon 76 from leucine (L) to proline (P) yielding a mutant GH-L76P peptide.Heterozygosity for GH-L76P/wt-GH was identified in a nonconsanguineous Spanish family. The index patients, two siblings, a boy and a girl, were referred for assessment of their short stature (-3.2 and -3.8 SD). Their grandmother, father, and aunt were also carrying the same mutation and showed severe short stature; therefore, IGHD II was diagnosed.AtT-20 cells coexpressing both wt-GH and GH-L76P showed a reduced GH secretion (P.001) after forskolin stimulation when compared with the cells expressing only wt-GH. In silico mutagenesis and molecular dynamics simulations presented alterations of correct folding and mutant stability compared with wt-GH. Therefore, further structural analysis of the GH-L76P mutant was performed using expressed and purified proteins in Escherichia coli by thermofluor assay and fast degradation proteolysis assay. Both assays revealed that the GH-L76P mutant is unstable and misfolded compared to wt-GH confirming the bioinformatic model prediction.This is the first report of a family suffering from short stature caused by IGHD II, which severely affects intracellular GH folding and stability as well as secretion, highlighting the necessity of functional analysis of any GH variant for defining new mechanisms as a cause for IGHD II.
- Published
- 2015
38. Altered Drug and Steroid Metabolism by Mutations in Human NADPH Cytochrome P450 Reductase
- Author
-
Amit V. Pandey and Christa E. Flück
- Subjects
Drug ,7-Dehydrocholesterol reductase ,Cytochrome ,biology ,Chemistry ,Endoplasmic reticulum ,media_common.quotation_subject ,Cytochrome P450 reductase ,Steroid Metabolism ,macromolecular substances ,Metabolism ,digestive system ,Biochemistry ,NADPH-Cytochrome P450 Reductase ,polycyclic compounds ,Genetics ,biology.protein ,Molecular Biology ,Biotechnology ,media_common - Abstract
Cytochrome P450 oxidoreductase (POR) is required for the metabolic reactions catalyzed by cytochrome P450s in the endoplasmic reticulum. It also participates in metabolism of several other molecule...
- Published
- 2015
- Full Text
- View/download PDF
39. Biochemical analysis of mutations in P450 oxidoreductase
- Author
-
Amit V. Pandey
- Subjects
Models, Molecular ,Cytochrome ,Flavin Mononucleotide ,Protein Conformation ,Mutant ,Biology ,medicine.disease_cause ,Biochemistry ,Genetic variation ,medicine ,Missense mutation ,NADPH-Ferrihemoprotein Reductase ,Genetics ,Mutation ,Binding Sites ,Polymorphism, Genetic ,Cytochrome c ,Genetic Variation ,Cytochrome P450 reductase ,Molecular biology ,Kinetics ,Amino Acid Substitution ,Flavin-Adenine Dinucleotide ,biology.protein ,Drug metabolism - Abstract
All microsomal P450s require POR (cytochrome P450 reductase) for catalytic activity. Most of the clinically used drugs are metabolized by a small number of P450s and polymorphisms in the cytochrome P450s are known to cause changes in drug metabolism. We have recently found a number of POR missense mutations in the patients with disordered steroidogenesis. Our initial report described five missense mutations (A284P, R454H, V489E, C566Y and V605F) identified in four patients. We built bacterial expression vectors for each POR variant, purified the membranes expressing normal or variant POR and characterized their activities with cytochrome c and P450c17 assays. We have recently completed an extensive study of the range of POR mutations and characterized the mutants/polymorphisms A112V, T139A, M260V, Y456H, A500V, G536R, L562P, R613X, V628I and F643del from sequencing of patient DNA. We also studied POR variants Y179D, P225L, R313W, G410S and G501R that were available in databases or the published literature. We analysed the mutations with a three-dimensional model of human POR that was based on an essentially similar rat POR with known crystal structure. The missense mutations found in patients with disordered steroidogenesis mapped to functionally important domains of POR and the apparent polymorphisms mapped to less crucial regions. Since a variation in POR can alter the activity of all microsomal P450s, it can also affect the drug metabolism even with a normal P450. Understanding the genetic and biochemical basis of POR-mediated drug metabolism will provide valuable information about possible differences in P450-mediated reactions among the individuals carrying a variant or polymorphic form of POR.
- Published
- 2006
- Full Text
- View/download PDF
40. Regulation of 17,20 Lyase Activity by Cytochrome b5 and by Serine Phosphorylation of P450c17
- Author
-
Walter L. Miller and Amit V. Pandey
- Subjects
endocrine system ,Cytochrome ,Allosteric regulation ,25-Hydroxyvitamin D3 1-alpha-hydroxylase ,17-alpha-Hydroxypregnenolone ,Biochemistry ,Cell Line ,Serine ,Cytochrome b5 ,Humans ,Protein Isoforms ,Phosphorylation ,Lyase activity ,Molecular Biology ,NADPH-Ferrihemoprotein Reductase ,chemistry.chemical_classification ,biology ,Steroid 17-alpha-Hydroxylase ,Cell Biology ,Cytochromes b5 ,Enzyme ,chemistry ,biology.protein ,RNA - Abstract
Cytochrome P450c17 catalyzes the 17alpha-hydroxylase activity required for glucocorticoid synthesis and the 17,20 lyase activity required for sex steroid synthesis. Most P450 enzymes have fixed ratios of their various activities, but the ratio of these two activities of P450c17 is regulated post-translationally. We have shown that serine phosphorylation of P450c17 and the allosteric action of cytochrome b5 increase 17,20 lyase activity, but it has not been apparent whether these two post-translational mechanisms interact. Using purified enzyme systems, we now show that the actions of cytochrome b5 are independent of the state of P450c17 phosphorylation. Suppressing cytochrome b5 expression in human adrenal NCI-H295A cells by >85% with RNA interference had no effect on 17alpha-hydroxylase activity but reduced 17,20 lyase activity by 30%. Increasing P450c17 phosphorylation could compensate for this reduced activity. When expressed in bacteria, human P450c17 required either cytochrome b5 or phosphorylation for 17,20 lyase activity. The combination of cytochrome b5 and phosphorylation was not additive. Cytochrome b5 and phosphorylation enhance 17,20 lyase activity independently of each other, probably by increasing the interaction between P450c17 and NADPH-cytochrome P450 oxidoreductase.
- Published
- 2005
- Full Text
- View/download PDF
41. Protein Phosphatase 2A and Phosphoprotein SET Regulate Androgen Production by P450c17
- Author
-
Amit V. Pandey, Walter L. Miller, and Synthia H. Mellon
- Subjects
Chromosomal Proteins, Non-Histone ,Phosphatase ,Biology ,Hydroxylation ,Biochemistry ,Phosphoserine ,chemistry.chemical_compound ,Microsomes ,Okadaic Acid ,Phosphoprotein Phosphatases ,Tumor Cells, Cultured ,Humans ,Histone Chaperones ,Protein Phosphatase 2 ,Enzyme Inhibitors ,Phosphorylation ,Fostriecin ,Lyase activity ,Molecular Biology ,DNA Primers ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,Proteins ,Steroid 17-alpha-Hydroxylase ,Cell Biology ,Okadaic acid ,Protein phosphatase 2 ,Polycystic ovary ,Adrenal Cortex Neoplasms ,Recombinant Proteins ,DNA-Binding Proteins ,Kinetics ,chemistry ,Phosphoprotein ,Androgens ,Transcription Factors - Abstract
Cytochrome P450c17 catalyzes 17 alpha-hydroxylation needed for cortisol synthesis and 17,20 lyase activity needed to produce sex steroids. Serine phosphorylation of P450c17 specifically increases 17,20 lyase activity, but the physiological factors regulating this effect remain unknown. Treating human adrenal NCI-H295A cells with the phosphatase inhibitors okadaic acid, fostriecin, and cantharidin increased 17,20 lyase activity, suggesting involvement of protein phosphatase 2A (PP2A) or 4 (PP4). PP2A but not PP4 inhibited 17,20 lyase activity in microsomes from cultured cells, but neither affected 17 alpha-hydroxylation. Inhibition of 17,20 lyase activity by PP2A was concentration-dependent, could be inhibited by okadaic acid, and was restored by endogenous protein kinases. PP2A but not PP4 coimmunoprecipitated with P450c17, and suppression of PP2A by small interfering RNA increased 17,20 lyase activity. Phosphoprotein SET found in adrenals inhibited PP2A, but not PP4, and fostered 17,20 lyase activity. The identification of PP2A and SET as post-translational regulators of androgen biosynthesis suggests potential additional mechanisms contributing to adrenarche and hyperandrogenic disorders such as polycystic ovary syndrome.
- Published
- 2003
- Full Text
- View/download PDF
42. Artemisinin, an Endoperoxide Antimalarial, Disrupts the Hemoglobin Catabolism and Heme Detoxification Systems in Malarial Parasite
- Author
-
Amit V. Pandey, Ram Lakhan Singh, Babu L. Tekwani, and Virander S. Chauhan
- Subjects
Hemeproteins ,Male ,Plasmodium falciparum ,Heme ,Prostaglandin Endoperoxides ,Biology ,Pharmacology ,Biochemistry ,Antimalarials ,Hemoglobins ,Mice ,chemistry.chemical_compound ,Chloroquine ,parasitic diseases ,medicine ,Animals ,Artemisinin ,Molecular Biology ,Hemozoin ,Plasmodium yoelii ,Cell Biology ,medicine.disease ,biology.organism_classification ,Artemisinins ,Mechanism of action ,chemistry ,Electrophoresis, Polyacrylamide Gel ,medicine.symptom ,Sesquiterpenes ,Malaria ,Drugs, Chinese Herbal ,medicine.drug - Abstract
Endoperoxide antimalarials based on the ancient Chinese drug Qinghaosu (artemisinin) are currently our major hope in the fight against drug-resistant malaria. Rational drug design based on artemisinin and its analogues is slow as the mechanism of action of these antimalarials is not clear. Here we report that these drugs, at least in part, exert their effect by interfering with the plasmodial hemoglobin catabolic pathway and inhibition of heme polymerization. In an in vitro experiment we observed inhibition of digestive vacuole proteolytic activity of malarial parasite by artemisinin. These observations were further confirmed by ex vivo experiments showing accumulation of hemoglobin in the parasites treated with artemisinin, suggesting inhibition of hemoglobin degradation. We found artemisinin to be a potent inhibitor of heme polymerization activity mediated by Plasmodium yoelii lysates as well as Plasmodium falciparum histidine-rich protein II. Interaction of artemisinin with the purified malarial hemozoin in vitro resulted in the concentration-dependent breakdown of the malaria pigment. Our results presented here may explain the selective and rapid toxicity of these drugs on mature, hemozoin-containing, stages of malarial parasite. Since artemisinin and its analogues appear to have similar molecular targets as chloroquine despite having different structures, they can potentially bypass the quinoline resistance machinery of the malarial parasite, which causes sublethal accumulation of these drugs in resistant strains.
- Published
- 1999
- Full Text
- View/download PDF
43. Assay of β-hematin formation by malaria parasite
- Author
-
Babu L. Tekwani, Amit V. Pandey, Naresh Singh, Virander S. Chauhan, and Sunil K. Puri
- Subjects
Male ,Screening test ,Clinical Biochemistry ,Drug Evaluation, Preclinical ,Pharmaceutical Science ,Heme ,Analytical Chemistry ,Antimalarials ,Mice ,Chloroquine ,Drug Discovery ,medicine ,Animals ,Parasite hosting ,Available drugs ,Spectroscopy ,biology ,Chemistry ,Hemozoin ,Reproducibility of Results ,Plasmodium yoelii ,medicine.disease ,biology.organism_classification ,Malaria ,Biochemistry ,Hemin ,Biological Assay ,medicine.drug - Abstract
Novel leads are urgently required for designing antimalarials due to the reduced efficacy of presently available drugs. The malaria parasite has a unique reaction of heme polymerization, which has attracted much attention in the recent past as a target for the design of antimalarial drugs. The process is hampered by non-availability of a proper assay method. Currently available methods are cumbersome and require advanced instrumentation or radioactive substrates. Here, we are describing an assay for hemozoin formation that is simple and reproducible. This assay has routinely been used by us for the identification of potential compounds with antimalarial activity.
- Published
- 1999
- Full Text
- View/download PDF
44. Synthetic peptides corresponding to a repetitive sequence of malarial histidine rich protein bind haem and inhibit haemozoin formation in vitro
- Author
-
Virender S. Chauhan, Babu L. Tekwani, Amit V. Pandey, Ratanmani Joshi, and Ram Lakhan Singh
- Subjects
Hemeproteins ,Male ,Plasmodium ,Molecular Sequence Data ,Complex formation ,Protozoan Proteins ,Repetitive Sequences ,Sequence (biology) ,Heme ,Biology ,Binding, Competitive ,Antimalarials ,Mice ,Chloroquine ,polycyclic compounds ,medicine ,Animals ,Amino Acid Sequence ,Binding site ,Molecular Biology ,Histidine ,Repeat unit ,Binding Sites ,digestive, oral, and skin physiology ,Proteins ,Peptide Fragments ,In vitro ,Biochemistry ,Parasitology ,medicine.drug - Abstract
Synthetic peptides containing a repetitive hexapeptide sequence (Ala-His-His-Ala-Ala-Asp) of malarial histidine-rich protein II were evaluated for binding with haem in vitro. The pattern of haem binding suggested that each repeat unit of this sequence provides one binding site for haem. Chloroquine inhibited the haem-peptide complex formation with preferential formation of a haem chloroquine complex. In vitro studies on haem polymerisation showed that none of the peptides could initiate haemozoin formation. However, they could inhibit haemozoin formation promoted by a malarial parasite extract, possibly by competitively binding free haem. These results indicate this hexapeptide sequence represents the haem binding site of the malarial histidine-rich protein and possibly the site of nucleation for haem polymerisation.
- Published
- 1997
- Full Text
- View/download PDF
45. Altered heme catabolism by heme oxygenase-1 caused by mutations in human NADPH cytochrome P450 reductase
- Author
-
Christa E. Flück, Primus E. Mullis, and Amit V. Pandey
- Subjects
Flavin Mononucleotide ,Biophysics ,Oxidative phosphorylation ,Heme ,Biology ,medicine.disease_cause ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Humans ,610 Medicine & health ,Molecular Biology ,Alleles ,030304 developmental biology ,NADPH-Ferrihemoprotein Reductase ,0303 health sciences ,Mutation ,Polymorphism, Genetic ,Adrenal Hyperplasia, Congenital ,Catabolism ,Biliverdin reductase ,Wild type ,Cell Biology ,POR Deficiency ,3. Good health ,Protein Structure, Tertiary ,Heme oxygenase ,chemistry ,030220 oncology & carcinogenesis ,Heme Oxygenase-1 - Abstract
Human heme oxygenase-1 (HO-1) carries out heme catabolism supported by electrons supplied from the NADPH through NADPH P450 reductase (POR, CPR). Previously we have shown that mutations in human POR cause a rare form of congenital adrenal hyperplasia. In this study, we have evaluated the effects of mutations in POR on HO-1 activity. We used purified preparations of wild type and mutant human POR and in vitro reconstitution with purified HO-1 to measure heme degradation in a coupled assay using biliverdin reductase. Here we show that mutations in POR found in patients may reduce HO-1 activity, potentially influencing heme catabolism in individuals carrying mutant POR alleles. POR mutants Y181D, A457H, Y459H, V492E and R616X had total loss of HO-1 activity, while POR mutations A287P, C569Y and V608F lost 50-70% activity. The POR variants P228L, R316W and G413S, A503V and G504R identified as polymorphs had close to WT activity. Loss of HO-1 activity may result in increased oxidative neurotoxicity, anemia, growth retardation and iron deposition. Further examination of patients affected with POR deficiency will be required to assess the metabolic effects of reduced HO-1 activity in affected individuals.
- Published
- 2010
46. Clinical, structural and functional implications of mutations and polymorphisms in human NADPH P450 oxidoreductase
- Author
-
Christa E. Flück, Amit V. Pandey, and Catherine Nicolo
- Subjects
Models, Molecular ,Flavin Mononucleotide ,Protein Conformation ,Population ,Flavoprotein ,Flavin mononucleotide ,Cofactor ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Humans ,Pharmacology (medical) ,Abnormalities, Multiple ,610 Medicine & health ,education ,030304 developmental biology ,NADPH-Ferrihemoprotein Reductase ,Pharmacology ,Flavin adenine dinucleotide ,0303 health sciences ,education.field_of_study ,Binding Sites ,Polymorphism, Genetic ,biology ,Adrenal Hyperplasia, Congenital ,Cytochrome P450 ,Genetic Variation ,Molecular biology ,3. Good health ,Biochemistry ,chemistry ,CYP17A1 ,030220 oncology & carcinogenesis ,Mutation ,biology.protein ,Flavin-Adenine Dinucleotide ,Steroids ,Nicotinamide adenine dinucleotide phosphate ,NADP - Abstract
Cytochrome P450 proteins are involved in metabolism of drugs and xenobiotics. In the endoplasmic reticulum a single nicotinamide adenine dinucleotide phosphate (NADPH) P450 oxidoreductase (POR) supplies electrons to all microsomal P450s for catalytic activity. POR is a flavoprotein that contains both flavin mononucleotide and flavin adenine dinucleotide as cofactors and uses NADPH as the source of electrons. We have recently reported a number of POR mutations in the patients with disordered steroidogenesis. In the first report we had described missense mutations (A287P, R457H, V492E, C569Y, and V608F) identified in four patients with defects in steroid production. Each POR variant was produced as recombinant N-27 form of the enzyme in bacteria and as full-length form in yeast. Membranes from bacteria or yeast expressing normal or variant POR were purified and their activities were characterized in cytochrome c and CYP17A1 assays. Later we have published a larger study that described a whole range of POR mutations and characterized the mutants/polymorphisms A115V, T142A, M263V, Y459H, A503V, G539R, L565P, R616X, V631I, and F646del from the sequencing of patient DNA. We also studied POR variants Y181D, P228L, R316W, G413S, and G504R that were available in public databases or published literature. Three-dimensional structure of rat POR is known and we have used this structure to deduce the structure-function correlation of POR mutations in human. The missense mutations found in patients with disordered steroidogenesis are generally in the co-factor binding and functionally important domains of POR and the apparent polymorphisms are found in regions with lesser structural importance. A variation in POR can alter the activity of all microsomal P450s, and therefore, can affect the metabolism of drugs and xenobiotics even when the P450s involved are otherwise normal. It is important to study the genetic and biochemical basis of POR variants in human population to gain information about possible differences in P450 mediated reactions among the individuals carrying a variant or polymorphic form of POR that could impact their metabolism.
- Published
- 2007
47. Hemozoin formation in malaria: a two-step process involving histidine-rich proteins and lipids
- Author
-
Vinod Babbarwal, Virander S. Chauhan, Jude Nnaemeka Okoyeh, Sunil K. Puri, Ram Lakhan Singh, Ratan Mani Joshi, and Amit V. Pandey
- Subjects
Hemeproteins ,Male ,Time Factors ,Heme binding ,Plasmodium falciparum ,Biophysics ,Plasma protein binding ,Biology ,Crystallography, X-Ray ,Biochemistry ,Catalysis ,Acetone ,chemistry.chemical_compound ,Antimalarials ,Mice ,Chloroquine ,parasitic diseases ,medicine ,Animals ,Histidine ,Molecular Biology ,Heme ,Hemozoin ,Proteins ,Lipid metabolism ,Hydrogen Bonding ,Cell Biology ,biology.organism_classification ,Lipid Metabolism ,Lipids ,In vitro ,Recombinant Proteins ,Malaria ,chemistry ,Peptides ,Dimerization ,medicine.drug ,Protein Binding - Abstract
Major blood stage antimalarial drugs like chloroquine and artemisinin target the heme detoxification process of the malaria parasite. Hemozoin formation reactions in vitro using the Plasmodium falciparum histidine-rich protein-2 (Pfhrp-2), lipids, and auto-catalysis are slow and could not explain the speed of detoxification needed for parasite survival. Here, we show that malarial hemozoin formation is a coordinated two component process involving both lipids and histidine-rich proteins. Hemozoin formation efficiency in vitro is 1-2% with Pfhrp-2 and 0.25-0.5% with lipids. We added lipids after 9h in a 12h Pfhrp-2 mediated reaction that resulted in sixfold increase in hemozoin formation. However, a lipid mediated reaction in which Pfhrp-2 was added after 9h produced only twofold increase in hemozoin production compared to the reaction with Pfhrp-2 alone. Synthetic peptides corresponding to the Pfhrp-2 heme binding sequences, based on repeats of AHHAAD, neither alone nor in combination with lipids were able to generate hemozoin in vitro. These results indicate that hemozoin formation in malaria parasite involves both the lipids and the scaffolding proteins. Histidine-rich proteins might facilitate hemozoin formation by binding with a large number of heme molecules, and facilitating the dimer formation involving iron-carboxylate bond between two heme molecules, and lipids may then subsequently assist the mechanism of long chain formation, held together by hydrogen bonds or through extensive networking of hydrogen bonds.
- Published
- 2003
48. Mechanism of malarial haem detoxification inhibition by chloroquine
- Author
-
Amit V. PANDEY, Himani BISHT, Vinod K. BABBARWAL, Jaya SRIVASTAVA, Kailash C. PANDEY, and Virander S. CHAUHAN
- Subjects
parasitic diseases ,digestive, oral, and skin physiology ,polycyclic compounds ,570 Life sciences ,biology ,Cell Biology ,Molecular Biology ,Biochemistry - Abstract
The haem detoxification pathway of the malaria parasite Plasmodiumfalciparum is a potential biochemical target for drug development. Free haem, released after haemoglobin degradation, is polymerized by the parasite to form haemozoin pigment. Plasmodiumfalciparum histidine-rich protein-2 (Pfhrp-2) has been implicated as the catalytic scaffold for detoxification of haem in the malaria parasite. Previously we have shown that a hexapeptide repeat sequence (Ala-His-His-Ala-Ala-Asp), which appears 33 times in Pfhrp-2, may be the major haem binding site in this protein. The haem binding studies carried out by ourselves indicate that up to 18 equivalents of haem could be bound by this protein with an observed Kd of 0.94µM. Absorbance spectroscopy provides evidence that chloroquine is capable of extracting haem bound to Pfhrp-2. This was supported by the Kd value, of 37nM, observed for the haem-chloroquine complex. The native PAGE studies reveal that the formation of the haem-Pfhrp-2 complex is disrupted by chloroquine. These results indicate that chloroquine may be acting by inhibiting haem detoxification/binding to Pfhrp-2. Moreover, the higher affinity of chloroquine for haem than Pfhrp-2 suggests a possible mechanism of action for chloroquine; it may remove the haem bound to Pfhrp-2 and form a complex that is toxic to the parasite.
- Published
- 2001
- Full Text
- View/download PDF
49. A colorimetric assay for heme in biological samples using 96-well plates
- Author
-
Amit V. Pandey, Babu L. Tekwani, Sunil K. Joshi, and Virander S. Chauhan
- Subjects
chemistry.chemical_compound ,Hemoglobins ,Biochemistry ,chemistry ,Biophysics ,Colorimetry ,Cell Biology ,Heme ,Biology ,Molecular Biology ,Molecular biology - Published
- 1999
50. Depolymerization of malarial hemozoin: a novel reaction initiated by blood schizontocidal antimalarials
- Author
-
Babu L Tekwani and Amit V. Pandey
- Subjects
Hemeproteins ,Biophysics ,Antimalarial ,610 Medicine & health ,Heme ,Biology ,Biochemistry ,Models, Biological ,chemistry.chemical_compound ,Antimalarials ,Hemoglobins ,Mice ,Hemozoin ,Structural Biology ,Chloroquine ,parasitic diseases ,Genetics ,medicine ,Parasite hosting ,Animals ,Globin ,Molecular Biology ,Depolymerization ,Cell Biology ,Pigments, Biological ,Plasmodium yoelii ,medicine.disease ,Malaria ,Kinetics ,chemistry ,570 Life sciences ,biology ,Hemoglobin ,medicine.drug - Abstract
Malaria parasite digests hemoglobin and utilizes the globin part for its nutritional requirements. Heme released as a byproduct of hemoglobin degradation is detoxified by polymerization into a crystalline, insoluble pigment, known as hemozoin. We have identified a novel reaction of depolymerization of hemozoin to heme. This reaction is initiated by the interaction of blood schizonticidal antimalarial drugs with the malarial hemozoin. The reaction has been confirmed, with the purified hemozoin as well as the lysate of the malaria parasite. Pigment breakdown was studied by infrared spectroscopy, thin-layer chromatography and spectrophotometric analysis. It was complete within 2 h of drug exposure, which explains the selective sensitivity of late stages (trophozoites and schizonts) of malarial parasites loaded with the hemozoin pigment to the toxic action of these drugs. It is suggested that the failure of the parasite heme detoxification system due to this reaction results in the accumulation of toxic heme, which alone, or complexed with the antimalarial leads to the death of malaria parasite.© 1997 Federation of European Biochemical Societies. All rights reserved.
- Published
- 1997
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.