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Using structure based drug design, a novel class of potent coagulation factor IXa (FIXa) inhibitors was designed and synthesized. High selectivity over FXa inhibition was achieved. Selected compounds were evaluated in rat IV/PO pharmacokinetic (PK) studies and demonstrated desirable oral PK profiles. Finally, the pharmacodynamics (PD) of this class of molecules were evaluated in thrombin generation assay (TGA) in Corn Trypsin Inhibitor (CTI) citrated human plasma and demonstrated characteristics of a FIXa inhibitor.

An imidazolylpyrimidine was identified in a CXCR2 chemokine receptor antagonist screen and was optimized for potency, in vitro metabolic stability, and oral bioavailability. It was found that subtle structural modification within the series affected the oral bioavailability. Potent and orally available CXCR2 antagonists are herein reported.

Background Multicellular organisms consist of cells of many different types that are established during development. Each type of cell is characterized by the unique combination of expressed gene products as a result of spatiotemporal gene regulation. Currently, a fundamental challenge in regulatory biology is to elucidate the gene expression controls that generate the complex body plans during development. Recent advances in high-throughput biotechnologies have generated spatiotemporal expression patterns for thousands of genes in the model organism fruit fly Drosophila melanogaster. Existing qualitative methods enhanced by a quantitative analysis based on computational tools we present in this paper would provide promising ways for addressing key scientific questions. Results We develop a set of computational methods and open source tools for identifying co-expressed embryonic domains and the associated genes simultaneously. To map the expression patterns of many genes into the same coordinate space and account for the embryonic shape variations, we develop a mesh generation method to deform a meshed generic ellipse to each individual embryo. We then develop a co-clustering formulation to cluster the genes and the mesh elements, thereby identifying co-expressed embryonic domains and the associated genes simultaneously. Experimental results indicate that the gene and mesh co-clusters can be correlated to key developmental events during the stages of embryogenesis we study. The open source software tool has been made available at http://compbio.cs.odu.edu/fly/. Conclusions Our mesh generation and machine learning methods and tools improve upon the flexibility, ease-of-use and accuracy of existing methods.

Rh(III)-catalyzed direct olefination of arenes with allyl acetate via C–H bond activation is described using N,N-disubstituted aminocarbonyl as the directing group. The catalyst undergoes a redox neutral process, and high to excellent yields of trans-products are obtained. This protocol exhibits a wide spectrum of functionality compatibility because of the simple reaction conditions employed and provides a highly effective synthetic method in the realm of C–H olefination.

The thermodynamic second dissociation constant K2 for sulfuric acid has been determined by conductivity measurements of aqueous sulfuric acid solutions at various temperatures. The data are treated by using two different methods developed with two independent assumptions due to Noyes et al. and Shedlovsky. Both methods require the knowledge of relevant ionic conductivities, which may be calculated from the Onsager limiting law. The values for K2 obtained with these two methods show excellent agreement. The value of 0.0103 mol-L−1 at 25°C agrees with the ‘best’ literature value of 0.0102 mol-L−1 within the experimental uncertainty, as also does the enthalpy of dissociation which is derived from the derivative of the temperature coefficient of K2.

Ionic interaction in the three systems Hcl-HEPES (N-2-hydroxyethylpiperazine-N′-2-ethanesulfonic acid), HCl-MOPSO (3-(N-Morpholino)-2-hydroxypropanesulfonic acid), and HCl-glycine have been studied in terms of their mutual influence on the respective activity coefficients of each component. Activity coefficients for each component of the three systems are calculated from emf measurements of solutions containing HCl and the amino acid in a H2/solution/AgCl,Ag cell at 25°C. The first dissociation constant of HEPES at 25°C has also been determined using emf and pH titration measurements.

1,2,4-Triazoles were synthesized on a solid support in three steps, with excellent yields and purities. The utility of this triazole-functionalized solid support was demonstrated by the solid-phase synthesis of various trisubstituted 1,2,4-triazoles.

A series of 3,4- and 3,5-disubstituted phenyl-containing cyclobutenedione analogues were synthesized and evaluated as CXCR2 receptor antagonists. Variations in the disubstitution pattern of the phenyl ring afforded new compounds with potent CXCR2 binding affinity in the low nanomolar ranges. Moreover, two potent compounds 19 and 26 exhibited good oral pharmacokinetic profiles.

A variety of 3,5-substituted 1,3-oxazolidines are synthesized from primary amines by a novel, two step sequence.

A new experimental approach is proposed for the evaluation of liquid junction potentials and single ion activities. Neither of these quantities can be experimentally measured without assumption. Furthermore, they are concentration dependent but without clearly defined functional relationships. Thus, a given assumption may be satisfactory to obtain these quantities at a given concentration, but will fail at another concentration. It is the intent of this paper to establish a functional relationship between the ratio of activity coefficients and the ionic strength, through which the liquid junction potentials may be computed, as well as the pH values at moderate ionic strengths (