171 results on '"Luqi Huang"'
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2. Biosynthesis, total synthesis, and pharmacological activities of aryltetralin-type lignan podophyllotoxin and its derivatives
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Siyu Shen, Yuru Tong, Yunfeng Luo, Luqi Huang, and Wei Gao
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Organic Chemistry ,Drug Discovery ,Biochemistry ,Catalysis ,Lignans ,Biosynthetic Pathways ,Podophyllotoxin - Abstract
This paper mainly focused on the asymmetric synthesis of natural product PTOX by biosynthesis and total synthesis, and pharmacological activities of its derivatives.
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- 2022
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3. The first chromosome-level Fallopia multiflora genome assembly provides insights into stilbene biosynthesis
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Yujiao Zhao, Zhengyang Yang, Zhongren Zhang, Minzhen Yin, Shanshan Chu, Zhenzhen Tong, Yuejian Qin, Liangping Zha, Qingying Fang, Yuan Yuan, Luqi Huang, and Huasheng Peng
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Genetics ,Plant Science ,Horticulture ,Biochemistry ,Biotechnology - Abstract
Fallopia multiflora (Thunb.) Harald, a vine belonging to the Polygonaceae family, is used in traditional medicine. The stilbenes contained in it have significant pharmacological activities in anti-oxidation and anti-aging. This study describes the assembly of the F. multiflora genome and presents its chromosome-level genome sequence containing 1.46 gigabases of data (with a contig N50 of 1.97 megabases), 1.44 gigabases of which was assigned to 11 pseudochromosomes. Comparative genomics confirmed that F. multiflora shared a whole-genome duplication event with Tartary buckwheat and then underwent different transposon evolution after separation. Combining genomics, transcriptomics, and metabolomics data to map a network of associated genes and metabolites, we identified two FmRS genes responsible for the catalysis of one molecule of p-coumaroyl-CoA and three molecules of malonyl-CoA to resveratrol in F. multiflora. These findings not only serve as the basis for revealing the stilbene biosynthetic pathway but will also contribute to the development of tools for increasing the production of bioactive stilbenes through molecular breeding in plants or metabolic engineering in microbes. Moreover, the reference genome of F. multiflora is a useful addition to the genomes of the Polygonaceae family.
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- 2023
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4. Structural insights revealed by crystal structures of CYP76AH1 and CYP76AH1 in complex with its natural substrate
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Lixin Huang, Lei Zhang, Xiaonan Huang, Mingyue Gu, Zhangxin Chen, Ke He, Luqi Huang, Jie Deng, Zhenzhan Chang, Chao Shi, and Juan Guo
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Models, Molecular ,Protein Conformation, alpha-Helical ,Stereochemistry ,Genetic Vectors ,Biophysics ,Gene Expression ,Secondary Metabolism ,Salvia miltiorrhiza ,Crystal structure ,Crystallography, X-Ray ,Biochemistry ,Substrate Specificity ,Catalysis ,Synthetic biology ,chemistry.chemical_compound ,Cytochrome P-450 Enzyme System ,Biosynthesis ,Escherichia coli ,Protein Interaction Domains and Motifs ,Cloning, Molecular ,Molecular Biology ,Plant Proteins ,chemistry.chemical_classification ,Binding Sites ,biology ,Chemistry ,Substrate (chemistry) ,Cytochrome P450 ,Cell Biology ,Recombinant Proteins ,Enzyme ,Abietanes ,biology.protein ,Protein Conformation, beta-Strand ,Diterpenes ,Protein Binding - Abstract
CYP76AH1 is the key enzyme in the biosynthesis pathway of tanshinones in Salvia miltiorrhiza, which are famous natural products with activities against various heart diseases and others. CYP76AH1 is a membrane-associated typical plant class II cytochrome P450 enzyme and its catalytic mechanism has not to be clearly elucidated. Structural determination of eukaryotic P450 enzymes is extremely challenging. Recently, we solved the crystal structures of CYP76AH1 and CYP76AH1 in complex with its natural substrate miltiradiene. The structure of CYP76AH1 complexed with miltiradiene is the first plant cytochrome P450 structure in complex with natural substrate. The studies revealed a unique array pattern of amino acid residues, which may play an important role in orienting and stabilizing the substrate for catalysis. This work would provide structural insights into CYP76AH1 and related P450s and the basis to efficiently improve tanshinone production by synthetic biology techniques.
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- 2021
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5. Probing the functions of friedelane‐type triterpene cyclases from four celastrol‐producing plants
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Jiadian Wang, Yuru Tong, Ping Su, Yun Lu, Yunfeng Luo, Wei Gao, Xiaoyi Wu, Yuan Liu, Lichan Tu, Tianyuan Hu, Zhouqian Jiang, Luqi Huang, Xiaochao Chen, and Zhou Jiawei
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chemistry.chemical_classification ,Plants, Medicinal ,biology ,Tripterygium ,Friedelin ,Celastrus ,Cell Biology ,Plant Science ,Genes, Plant ,biology.organism_classification ,Biosynthetic Pathways ,Celastraceae ,Terpene ,chemistry.chemical_compound ,chemistry ,Biosynthesis ,Biochemistry ,Triterpene ,Gene Expression Regulation, Plant ,Celastrol ,Molecular evolution ,Genetics ,Pentacyclic Triterpenes ,Site-directed mutagenesis ,Intramolecular Transferases - Abstract
Triterpenes are among the most diverse plant natural products, and their diversity is closely related to various triterpene skeletons catalyzed by different 2,3-oxidosqualene cyclases (OSCs). Celastrol, a friedelane-type triterpene with significant bioactivities, is specifically distributed in higher plants, such as Celastraceae species. Friedelin is an important precursor for the biosynthesis of celastrol, and it is synthesized through the cyclization of 2,3-oxidosqualene, with the highest number of rearrangements being catalyzed by friedelane-type triterpene cyclases. However, the molecular mechanisms underlying the catalysis of friedelin production by friedelane-type triterpene cyclases have not yet been fully elucidated. In this study, transcriptome data of four celastrol-producing plants from Celastraceae were used to identify a total of 21 putative OSCs. Through functional characterization, the friedelane-type triterpene cyclases were separately verified in the four plants. Analysis of the selection pressure showed that purifying selection acted on these OSCs, and the friedelane-type triterpene cyclases may undergo weaker selective restriction during evolution. Molecular docking and site-directed mutagenesis revealed that changes in some amino acids that are unique to friedelane-type triterpene cyclases may lead to variations in catalytic specificity or efficiency, thereby affecting the synthesis of friedelin. Our research explored the functional diversity of triterpene synthases from a multispecies perspective. It also provides some references for further research on the relative mechanisms of friedelin biosynthesis.
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- 2021
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6. Engineering yeast subcellular compartments for increased production of the lipophilic natural products ginsenosides
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Rongsheng Li, Yusong Shi, Dong Wang, Zhubo Dai, Luqi Huang, and Xueli Zhang
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0106 biological sciences ,Ginsenosides ,Heterologous ,Bioengineering ,Saccharomyces cerevisiae ,01 natural sciences ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,010608 biotechnology ,Lipid droplet ,Organelle ,030304 developmental biology ,Biological Products ,0303 health sciences ,ATP synthase ,biology ,Chemistry ,Endoplasmic reticulum ,Yeast ,Biosynthetic Pathways ,Biochemistry ,Fermentation ,biology.protein ,Protopanaxadiol ,Biotechnology - Abstract
Eukaryotic yeasts have a variety of subcellular compartments and are ideal platform strains for the construction of complex heterologous natural product biosynthesis pathways. Improving the synthesis efficiency of microbial cell factories through the utilization and modification of subcellular compartments by synthetic biology has good application prospects. Here, we used the yeast PLN1 protein to target the normally endoplasmic reticulum (ER)-localized cytochrome P450 enzyme protopanaxadiol (PPD) synthase (PPDS) to lipid droplets (LDs), which are the storage organelles of the PPDS substrate dammarenediol-II (DD). The efficiency of converting DD to PPD was significantly increased by 394%, and the conversion rate of DD increased from 17.4% to 86.0%. Furthermore, increasing the volume of LDs can significantly enhance the production of DD and its derivatives, but the change in the ratio of the volume and surface area of LDs decreased the conversion efficiency of DD to PPD. Additionally, the biosynthetic pathways of the PPD-type saponin ginsenoside compound K (CK) was reconstituted in a PPD-producing chassis strain, and CK production reached 21.8 mg/L/OD, 4.4-fold higher compared to the native ER-expression strategy. Next, we enhanced the expression of the Pn3-29 gene module to further reduce the accumulation of PPD and increase the production of CK to 41.3 mg/L/OD. Finally, the CK titer of the resulting strain reached 5 g/L in 5 L fed-batch fermentations. This study provides a new strategy for engineering yeast to produce complex natural products.
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- 2021
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7. Functional characterization and substrate promiscuity of sesquiterpene synthases from Tripterygium wilfordii
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Wei Gao, Tianyuan Hu, Yadi Song, Ping Su, Yuru Tong, Lichan Tu, Kang Chen, Luqi Huang, Yuan Liu, and Tiezheng Liu
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Tripterygium ,Stereochemistry ,Sesquiterpene ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,Gene Expression Regulation, Enzymologic ,Substrate Specificity ,Terpene ,chemistry.chemical_compound ,Linalool ,Gene Expression Regulation, Plant ,Structural Biology ,Catalytic Domain ,Molecular Biology ,Plant Proteins ,Nerolidol ,Alkyl and Aryl Transferases ,biology ,Terpenes ,Substrate (chemistry) ,Active site ,General Medicine ,biology.organism_classification ,chemistry ,Mutagenesis, Site-Directed ,biology.protein ,Tripterygium wilfordii ,Diterpene - Abstract
Acyclic terpenes, commonly found in plants, are of high physiological importance and commercial value, and their diversity was controlled by different terpene synthases. During the screen of sesquiterpene synthases from Tripterygium wilfordii, we observed that Ses-TwTPS1-1 and Ses-TwTPS2 promiscuously accepted GPP, FPP, and GGPP to produce corresponding terpene alcohols (linalool/nerolidol/geranyllinalool). The Ses-TwTPS1-2, Ses-TwTPS3, and Ses-TwTPS4 also showed unusual substrate promiscuity by catalyzing GGPP or GPP in addition to FPP as substrate. Furthermore, key residues for the generation of diterpene product, (E, E)-geranyllinalool, were screened depending on mutagenesis studies. The functional analysis of Ses-TwTPS1-1:V199I and Ses-TwTPS1-2:I199V showed that Val in 199 site assisted the produce of diterpene product geranyllinalool by enzyme mutation studies, which indicated that subtle differences away from the active site could alter the product outcome. Moreover, an engineered sesquiterpene high-yielding yeast that produced 162 mg/L nerolidol in shake flask conditions was constructed to quickly identify the function of sesquiterpene synthases in vivo and develop potential applications in microbial fermentation. Our functional characterization of acyclic sesquiterpene synthases will give some insights into the substrate promiscuity of diverse acyclic terpene synthases and provide key residues for expanding the product portfolio.
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- 2021
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8. Mitochondria-targeted pentacyclic triterpenoid carbon dots for selective cancer cell destruction via inducing autophagy, apoptosis, as well as ferroptosis
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Luyao Tian, Haixia Ji, Wenzhe Wang, Xiaoying Han, Xinyu Zhang, Xia Li, Lanping Guo, Luqi Huang, and Wenyuan Gao
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Biological Products ,Organic Chemistry ,Water ,Apoptosis ,Antineoplastic Agents ,Biochemistry ,Carbon ,Triterpenes ,Mitochondria ,Drug Delivery Systems ,Neoplasms ,Drug Discovery ,Quantum Dots ,Autophagy ,Humans ,Ferroptosis ,Molecular Biology - Abstract
Natural products have been an important database for anti-cancer drug development. However, low water solubility and poor biocompatibility limit the efficacy of natural products. Carbon dots (CDs), as an emerging 0D material, have unique properties in bioimaging, water solubility and biocompatibility. Here, we prepared three pentacyclic triterpenoids (PTs) included glycyrrhetinic acid (GA), ursolic acid (UA) and oleanolic acid (OA), which have anticancer activity but poor water solubility, as raw materials into CDs to improve disadvantages. Our data indicated that the active surface groups of all three CDs were largely preserved and were able to excite green fluorescence. Their carboxyl edges not only exhibited excellent water solubility, but also specifically targeted tumor cell mitochondria due to high sensitivity to ROS-induced damage and high internal oxidative stress. In cancer cells, the PT-CDs induced cell death through three pathways (apoptosis, ferroptosis, and autophagy), which is essentially the same way their raw materials induce death, but the effect was much stronger than raw materials. Notably, functionalized PT-CDs also exhibited extremely low toxicity. In summary, PT-CDs not only have improved water solubility and biocompatibility, but also retain the structure of their raw materials well and exert better efficacy, which provides new ideas for the development of anti-cancer natural product drugs.
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- 2022
9. Catalytic promiscuity of O-methyltransferases from Corydalis yanhusuo leading to the structural diversity of benzylisoquinoline alkaloids
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Junling Bu, Xiuhua Zhang, Qishuang Li, Ying Ma, Zhimin Hu, Jian Yang, Xiuyu Liu, Ruishan Wang, Xiang Jiao, Tong Chen, Changjiangsheng Lai, Guanghong Cui, Jinfu Tang, Yu Kong, Lei Yang, Sheng Lin, Yun Chen, Juan Guo, and Luqi Huang
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Genetics ,Plant Science ,Horticulture ,Biochemistry ,Biotechnology - Abstract
O-methyltransferases (OMTs) play essential roles in producing structural diversity and improving biological property of benzylisoquinoline alkaloids (BIAs) in plants. In this study, Corydalis yanhusuo, a plant used in traditional Chinese medicine due to the analgesic effects of its BIA active compounds, was employed to analyze the catalytic characteristics of OMTs in the formation of BIAs diversity. Seven genes encoding O-methyltransferases were cloned, and functionally characterized using seven potential BIA substrates. Specifically, an OMT (CyOMT2) with highly efficient catalytic activity of both 4’-and 6-O-methylations of 1-BIAs was found. CyOMT6 was found to perform two sequential methylations at both 9-and 2-positions of the essential intermediate of tetrahydroprotoberberines, (S)-scoulerine. Two OMTs (CyOMT5 and CyOMT7) with wide substrate promiscuity were found, with 2-position of tetrahydroprotoberberines as the preferential catalytic site for CyOMT5 (named scoulerine 2-O-methyltransferase), and 6-position of 1-BIAs as the preferential site for CyOMT7. In addition, through integrated phylogenetic, molecular docking analysis, and site directed mutation, it suggested that residues at sites of 172, 306, 313 and 314 in CyOMT5 are important for enzyme promiscuity related to O-methylations at 6- and 7-positions of isoquinoline. Cys at site 253 in CyOMT2 was proved to promote the methylation activity of 6-position and to expand substrate scopes. This work provides insight of O-methyltransferases in producing BIAs diversity in C. yanhusuo, and genetic elements for producing BIAs by metabolic engineering and synthetic biology.
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- 2022
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10. Genome-wide analysis of Panax MADS-box genes reveals role of PgMADS41 and PgMADS44 in modulation of root development and ginsenoside synthesis
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Honghong Jiao, Zhongyi Hua, Junhui Zhou, Jin Hu, Yuyang Zhao, Yingping Wang, Yuan Yuan, and Luqi Huang
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Structural Biology ,General Medicine ,Molecular Biology ,Biochemistry - Published
- 2023
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11. Endophytes, biotransforming microorganisms, and engineering microbial factories for triterpenoid saponins production
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Juan Wang, Luqi Huang, Wenyuan Gao, Lu Yao, and Junping He
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Aspergillus ,Plants, Medicinal ,biology ,Agrobacterium ,Chemistry ,Microorganism ,Yarrowia ,Bacillus ,General Medicine ,Saponins ,biology.organism_classification ,complex mixtures ,Applied Microbiology and Biotechnology ,Triterpenes ,carbohydrates (lipids) ,Metabolic Engineering ,Biochemistry ,Biotransformation ,parasitic diseases ,Endophytes ,Fermentation ,Medicinal plants ,Biotechnology - Abstract
Triterpenoid saponins are structurally diverse secondary metabolites. They are the main active ingredient of many medicinal plants and have a wide range of pharmacological effects. Traditional production of triterpenoid saponins, directly extracted from cultivated plants, cannot meet the rapidly growing demand of pharmaceutical industry. Microorganisms with triterpenoid saponins production ability (especially Agrobacterium genus) and biotransformation ability, such as fungal species in Armillaria and Aspergillus genera and bacterial species in Bacillus and Intestinal microflora, represent a valuable source of active metabolites. With the development of synthetic biology, engineering microorganisms acquired more potential in terms of triterpenoid saponins production. This review focusses on potential mechanisms and the high yield strategies of microorganisms with inherent production or biotransformation ability of triterpenoid saponins. Advances in the engineering of microorganisms, such as Saccharomyces cerevisiae, Yarrowia lipolytica, and Escherichia coli, for the biosynthesis triterpenoid saponins de novo have also been reported. Strategies to increase the yield of triterpenoid saponins in engineering microorganisms are summarized following four aspects, that is, introduction of high efficient gene, optimization of enzyme activity, enhancement of metabolic flux to target compounds, and optimization of fermentation conditions. Furthermore, the challenges and future directions for improving the yield of triterpenoid saponins biosynthesis in engineering microorganisms are discussed.
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- 2021
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12. Expansion within the CYP71D subfamily drives the heterocyclization of tanshinones synthesis in Salvia miltiorrhiza
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Jian Yang, Yanan Wang, Chang-Jiang-Sheng Lai, Luqi Huang, Li-Ping Kang, Wen Zeng, Tong Chen, Ye Shen, Baolong Jin, Xiaoquan Qi, Xiaohui Ma, Yujun Zhao, Reuben J. Peters, Jinfu Tang, Guanghong Cui, Rui-Shan Wang, Juan Guo, and Ying Ma
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0106 biological sciences ,0301 basic medicine ,Subfamily ,Science ,General Physics and Astronomy ,Salvia miltiorrhiza ,Salvia ,Genes, Plant ,Plant Roots ,01 natural sciences ,Article ,General Biochemistry, Genetics and Molecular Biology ,Evolution, Molecular ,Hydroxylation ,Plant evolution ,03 medical and health sciences ,chemistry.chemical_compound ,Cytochrome P-450 Enzyme System ,Gene cluster ,Secondary metabolism ,Plant Proteins ,Multidisciplinary ,biology ,fungi ,Cytochrome P450 ,food and beverages ,Genomics ,General Chemistry ,biology.organism_classification ,030104 developmental biology ,Biochemistry ,chemistry ,Cyclization ,Multigene Family ,Abietanes ,biology.protein ,Lamiaceae ,Genome, Plant ,Drugs, Chinese Herbal ,010606 plant biology & botany - Abstract
Tanshinones are the bioactive nor-diterpenoid constituents of the Chinese medicinal herb Danshen (Salvia miltiorrhiza). These groups of chemicals have the characteristic furan D-ring, which differentiates them from the phenolic abietane-type diterpenoids frequently found in the Lamiaceae family. However, how the 14,16-epoxy is formed has not been elucidated. Here, we report an improved genome assembly of Danshen using a highly homozygous genotype. We identify a cytochrome P450 (CYP71D) tandem gene array through gene expansion analysis. We show that CYP71D373 and CYP71D375 catalyze hydroxylation at carbon-16 (C16) and 14,16-ether (hetero)cyclization to form the D-ring, whereas CYP71D411 catalyzes upstream hydroxylation at C20. In addition, we discover a large biosynthetic gene cluster associated with tanshinone production. Collinearity analysis indicates a more specific origin of tanshinones in Salvia genus. It illustrates the evolutionary origin of abietane-type diterpenoids and those with a furan D-ring in Lamiaceae., Salvia miltiorrhiza is a medicinal plant that can produce the bioactive tanshinones. Here, the authors report the improved genome assembly and reveal the possible roles of three CYP71Ds in catalyzing the reactions leading to the formation of the characteristic furan D-ring of transhinones.
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- 2021
13. Featured Cover
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Mei Yang, Minzhen Yin, Shanshan Chu, Yujiao Zhao, Qingying Fang, Ming'en Cheng, Huasheng Peng, and Luqi Huang
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Complementary and alternative medicine ,Drug Discovery ,Molecular Medicine ,Plant Science ,General Medicine ,Biochemistry ,Food Science ,Analytical Chemistry - Published
- 2022
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14. Eremophilane and Cadinene Sesquiterpenes from Syringa oblata and Their Protective Effects against Hypoxia‐Induced Injury on H9c2 Cells
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Badalahu Tai, Laxinamujila Bai, Muyao Yu, Juan Liu, Han Zheng, and Luqi Huang
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Polycyclic Sesquiterpenes ,Molecular Structure ,Circular Dichroism ,Molecular Medicine ,Bioengineering ,General Chemistry ,General Medicine ,Syringa ,Hypoxia ,Sesquiterpenes ,Molecular Biology ,Biochemistry - Abstract
Seven sesquiterpenes including four eremophilanes (1-4) and three cadinenes (5-7), were isolated from the heartwood of Syringa oblata Lindl. Among them, three new eremophilane-type sesquiterpenes were identified and named oblatanoids A-C (1-3), respectively. Their structures were established by extensive analyses of spectroscopic methods, and their absolute configurations were determined by electronic circular dichroism (ECD) calculations. All these new compounds were evaluated for protective effects against hypoxia-induced injury on H9c2 cells, and 1-3 exhibited significantly protective activities toward H9c2 cells in vitro.
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- 2022
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15. Regulation of chlorogenic acid, flavonoid, and iridoid biosynthesis by histone H3K4 and H3K9 methylation in Lonicera japonica
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Shuang Liu, Jun-Hui Zhou, Yuan Yuan, Tianrui Liu, Yan Jin, Jian Yang, Yu-Yang Zhao, and Luqi Huang
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0301 basic medicine ,Iridoid ,medicine.drug_class ,Gene Expression ,Lonicera japonica ,Real-Time Polymerase Chain Reaction ,Methylation ,Bioactive compounds ,Histone methylation ,Japonica ,Histones ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Chlorogenic acid ,Gene Expression Regulation, Plant ,Tandem Mass Spectrometry ,Genetics ,medicine ,Different producing areas ,Gene Regulatory Networks ,Iridoids ,Epigenetics ,Molecular Biology ,Chromatography, High Pressure Liquid ,Plant Proteins ,Flavonoids ,biology ,food and beverages ,General Medicine ,biology.organism_classification ,Plant Leaves ,Lonicera ,030104 developmental biology ,Histone ,chemistry ,Biochemistry ,030220 oncology & carcinogenesis ,biology.protein ,H3K4me3 ,Original Article ,Chlorogenic Acid ,Luteolin ,Drugs, Chinese Herbal ,Signal Transduction - Abstract
Lonicera japonica is used in Chinese herbal medicines with a wide spectrum of pharmacological properties associated with chlorogenic acid, flavonoid and iridoid. The biosynthesis of these compounds could be affected by genetic inheritance and epigenetic modification. However, the mechanisms that regulate the expression of genes involved in the biosynthesis of these compounds are rarely known. The results of qRT-PCR showed that the biosynthesis gene expression of these compounds was related to histone H3K4 and H3K9 methylation levels. These active compounds content of L. japonica were measured by UPLC-MS/MS. H3K4me3 showed a positive correlation with chlorogenic acid and loganic acid content, and H3K9me positively correlated with luteolin content. The correlation between histone methylation levels and the levels of luteolin and loganic acid in L. japonica from different producing areas validate the regulatory role of histone methylation in biosynthesis of bioactive compounds. Our study demonstrated a potential regulatory network of H3K9/H3K4 methylation to gene expression and content of secondary metabolites, and provided a basis for understanding the mechanism underlying the variation of major bioactive compounds in L. japonica. Electronic supplementary material The online version of this article (10.1007/s11033-020-05990-7) contains supplementary material, which is available to authorized users.
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- 2020
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16. Engineering chimeric diterpene synthases and isoprenoid biosynthetic pathways enables high-level production of miltiradiene in yeast
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Tianyuan Hu, Luqi Huang, Yun Lu, Wei Gao, Nan Liu, Lichan Tu, Xin-Lin Li, Xiaoyi Wu, Zhouqian Jiang, Yuru Tong, Yongjin J. Zhou, Jiadian Wang, Jiawei Zhou, Yifeng Zhang, Ping Su, Linhui Gao, and Yuan Liu
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0106 biological sciences ,Mutant Chimeric Proteins ,Bioengineering ,Saccharomyces cerevisiae ,01 natural sciences ,Applied Microbiology and Biotechnology ,Carnosol ,Metabolic engineering ,03 medical and health sciences ,chemistry.chemical_compound ,Geranylgeraniol ,010608 biotechnology ,Plectranthus barbatus ,Computer Simulation ,030304 developmental biology ,0303 health sciences ,biology ,Terpenes ,Carnosic acid ,biology.organism_classification ,Yeast ,Terpenoid ,Biosynthetic Pathways ,Metabolic Engineering ,chemistry ,Biochemistry ,Fermentation ,Mutation ,CRISPR-Cas Systems ,Diterpenes ,Diterpene ,Metabolic Networks and Pathways ,Plasmids ,Biotechnology - Abstract
Miltiradiene is a key intermediate in the biosynthesis of many important natural diterpene compounds with significant pharmacological activity, including triptolide, tanshinones, carnosic acid and carnosol. Sufficient accumulation of miltiradiene is vital for the production of these medicinal compounds. In this study, comprehensive engineering strategies were applied to construct a high-yielding miltiradiene producing yeast strain. First, a chassis strain that can accumulate 2.1 g L-1 geranylgeraniol was constructed. Then, diterpene synthases from various species were evaluated for their ability to produce miltiradiene, and a chimeric miltiradiene synthase, consisting of class II diterpene synthase (di-TPS) CfTPS1 from Coleus forskohlii (Plectranthus barbatus) and class I di-TPS SmKSL1 from Salvia miltiorrhiza showed the highest efficiency in the conversion of GGPP to miltiradiene in yeast. Moreover, the miltiradiene yield was further improved by protein modification, which resulted in a final yield of 550.7 mg L-1 in shake flasks and 3.5 g L-1 in a 5-L bioreactor. This work offers an efficient and green process for the production of the important intermediate miltiradiene, and lays a foundation for further pathway reconstruction and the biotechnological production of valuable natural diterpenes.
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- 2020
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17. Analysis of the Transcriptome of Polygonatum odoratum (Mill.) Druce Uncovers Putative Genes Involved in Isoflavonoid Biosynthesis
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Luqi Huang, Chunmiao Shan, Yuanyuan Shi, Kelong Ma, Liqiang Zhao, Shengxiang Zhang, and Jiawen Wu
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0106 biological sciences ,0301 basic medicine ,Chalcone synthase ,endocrine system ,biology ,Plant Science ,Phenylalanine ammonia-lyase ,biology.organism_classification ,01 natural sciences ,Transcriptome ,Polygonatum odoratum ,03 medical and health sciences ,Metabolic pathway ,030104 developmental biology ,Biochemistry ,Isoflavonoid biosynthesis ,biology.protein ,KEGG ,Gene ,010606 plant biology & botany - Abstract
Polygonatum odoratum (Mill.) Druce (P. odoratum) is a traditional Chinese herb. The isoflavonoids of P. odoratum are important medicinal bioactive compounds for the treatment of hypoimmunity, rheumatic heart disease, cardiovascular diseases, and diabetes. This study used RNA sequencing to identify potential genes regulating isoflavonoid biosynthesis in P. odoratum. To do this, we generated an overview of metabolic and secondary metabolic pathways, using MAPMAN, and identified 96 genes encoding seven key enzymes involved in isoflavonoid biosynthesis through their KEGG annotation. Alignment of phenylalanine ammonia-lyase or chalcone synthase amino acid sequences revealed well-conserved sequences, spatial structures, and active sites. We also verified the expression of key genes encoding phenylalanine ammonia-lyase and chalcone synthase by quantitative real-time PCR (qRT-PCR). This analysis of the isoflavonoid biosynthesis pathway and its crucial enzymes in P. odoratum lays the foundation for uncovering the regulatory mechanism of isoflavonoid biosynthesis.
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- 2020
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18. Investigating the Catalytic Activity of Glycosyltransferase on Quercetin from Tripterygium wilfordii
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Siyuan Guo, Luqi Huang, Yuru Tong, Jie Gao, Baowei Ma, Wei Gao, Yun Lu, and Yifeng Zhang
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chemistry.chemical_classification ,Pinocembrin ,biology ,Chemistry ,Phloretin ,General Chemical Engineering ,food and beverages ,General Chemistry ,biology.organism_classification ,Article ,chemistry.chemical_compound ,Enzyme ,Glucoside ,Biochemistry ,Uridine diphosphate glucose ,Tripterygium wilfordii ,Quercetin ,QD1-999 ,Luteolin - Abstract
Flavonoid glycosides have shown many pharmacological activities in clinical studies. However, the main way to obtain flavonoid glycosides is to extract and separate them from plants, which wastes both time and resources. Here, we identified the O-glycosyltransferase (UGTs) TwUGT3 from Tripterygium wilfordii and analyzed its bioinformatics. First, the enzyme was found to utilize phloretin and uridine diphosphate glucose (UDPG) as substrates to produce an acid-tolerant glucoside. Then, it also can use quercetin and UDPG as substrates to produce the corresponding O-glucoside. In addition, we further explored the substrate specificity of TwUGT3, which suggested that it also accepts luteolin, pinocembrin, and genistein to produce the corresponding O-glucosides. Subsequently, the optimum pH, reaction time, reaction temperature, and enzymatic kinetic parameters of TwUGT3 were determined.
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- 2020
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19. Front Cover: Alashanoids O–S, seco ‐Humulane and Eremophilane Sesquiterpenoids from Syringa pinnatifolia (Chem. Biodiversity 2/2022)
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Changxin Liu, Shungang Jiao, Anni Li, Jixuan Xu, Xiaochun Zhou, Suyile Chen, Pengfei Tu, Luqi Huang, and Xingyun Chai
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Molecular Medicine ,Bioengineering ,General Chemistry ,General Medicine ,Molecular Biology ,Biochemistry - Published
- 2022
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20. Alashanoids O–S, seco ‐Humulane and Eremophilane Sesquiterpenoids from Syringa pinnatifolia
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Changxin Liu, Shungang Jiao, Anni Li, Jixuan Xu, Xiaochun Zhou, Suyile Chen, Pengfei Tu, Luqi Huang, and Xingyun Chai
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Polycyclic Sesquiterpenes ,Magnetic Resonance Spectroscopy ,Molecular Structure ,Molecular Medicine ,Bioengineering ,General Chemistry ,General Medicine ,Syringa ,Sesquiterpenes ,Molecular Biology ,Biochemistry - Abstract
Five new sesquiterpenoids, alashanoids O-S (1-5), along with three known analogs (6-8) were isolated from the peeled stems of Syringa pinnatifolia. Their structures were elucidated by analysis of extensive spectroscopic data including ESI-MS, 1D, 2D NMR. The absolute configurations were determined by comparing its experimental and calculated electronic circular dichroism, calculated OR, calculated NMR, and single crystal X-ray diffraction data analysis. Compounds 1 and 2 belong to the seco-humulane type and possess a rare 13-membered oxygen heterocycle framework, and 3-5 belong to eremophilane-type. Compounds 1, 2, and 5 showed inhibitory effects against NO production in LPS-induced RAW264.7 macrophage cells with its IC
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- 2022
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21. Identification and characterization of two Isatis indigotica O-methyltransferases methylating C-glycosylflavonoids
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Yuping Tan, Jian Yang, Yinyin Jiang, Shufu Sun, Xiaoyan Wei, Ruishan Wang, Junling Bu, Dayong Li, Liping Kang, Tong Chen, Juan Guo, Guanghong Cui, Jinfu Tang, and Luqi Huang
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Genetics ,Plant Science ,Horticulture ,Biochemistry ,Biotechnology - Abstract
Isatis indigotica accumulates several active substances, including C-glycosylflavonoids, which have important pharmacological activities and health benefits. However, enzymes catalyzing the methylation step of C-glycosylflavonoids in I. indigotica remain unknown. In this study, three O-methyltransferases (OMTs) were identified from I. indigotica that have the capacity for O-methylation of the C-glycosylflavonoid isoorientin. The Type II OMTs IiOMT1 and IiOMT2 efficiently catalyze isoorientin to form isoscoparin, and decorate one of the aromatic vicinal hydroxyl groups on flavones and methylate the C6, C8, and 3′-hydroxyl positions to form oroxylin A, wogonin, and chrysoeriol, respectively. However, the Type I OMT IiOMT3 exhibited broader substrate promiscuity and methylated the C7 and 3′-hydroxyl positions of flavonoids. Further site-directed mutagenesis studies demonstrated that five amino acids of IiOMT1/IiOMT2 (D121/D100, D173/D149, A174/A150R, N200/N176, and D248/D233) were critical residues for their catalytic activity. Additionally, only transient overexpression of Type II OMTs IiOMT1 and IiOMT2 in Nicotiana benthamiana significantly increased isoscoparin accumulation, indicating that the Type II OMTs IiOMT1 and IiOMT2 could catalyze the methylation step of C-glycosylflavonoid, isoorientin at the 3′-hydroxyl position. This study provides insights into the biosynthesis of methylated C-glycosylflavonoids, and IiOMTs could be promising catalysts in the synthesis of bioactive compounds.
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- 2022
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22. Diverse lignans with protective effect against hypoxia/oxidative injuries to H9c2 cells from Syringa pinnatifolia Hemsl
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Shungang Jiao, Xiaoli Gao, Junjun Li, Ruifei Zhang, Shana Wuken, Changxin Liu, Suyile Chen, Pengfei Tu, Luqi Huang, and Xingyun Chai
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Plant Science ,General Medicine ,Horticulture ,Molecular Biology ,Biochemistry - Abstract
A bioactivity-guided fractionation on the phenolic fractions from the peeled stems of Syringa pinnatifolia Hemsl., one of representative Mongolian folk medicine in China, led to the isolation and structural determination of 11 undescribed lignans and 12 known ones. These lignans cover diverse types, among them syringanones A and B represent an unprecedented carbon skeleton (proposed syringanane) and alashanenol A possesses a rare bicyclo [3.3.1]nonadienemethanol core. Their structures were established by extensive spectroscopic data analysis, X-ray diffraction, and quantum chemical calculations. All isolates were evaluated for their cardioprotective activities on H9c2 cardiomyocytes in vitro. The results showed that five lignans exhibited the protective effects against hypoxia-induced injury at the concentrations of 1.2-40 μM and six lignans exhibited anti-oxidative stress injury at 10-40 μM. These findings account to some extend for the traditional therapeutic effects of S. pinnatifolia for the treatment of ischemic heart diseases in clinic.
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- 2023
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23. Towards Generating Realistic Wrist Pulse Signals Using Enhanced One Dimensional Wasserstein GAN
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Jiaxing Chang, Fei Hu, Huaxing Xu, Xiaobo Mao, Yuping Zhao, and Luqi Huang
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wrist pulse signal ,generative adversarial network ,Electrical and Electronic Engineering ,Biochemistry ,Instrumentation ,Atomic and Molecular Physics, and Optics ,data augmentation ,Analytical Chemistry - Abstract
For the past several years, there has been an increasing focus on deep learning methods applied into computational pulse diagnosis. However, one factor restraining its development lies in the small wrist pulse dataset, due to privacy risks or lengthy experiments cost. In this study, for the first time, we address the challenging by presenting a novel one-dimension generative adversarial networks (GAN) for generating wrist pulse signals, which manages to learn a mapping strategy from a random noise space to the original wrist pulse data distribution automatically. Concretely, Wasserstein GAN with gradient penalty (WGAN-GP) is employed to alleviate the mode collapse problem of vanilla GANs, which could be able to further enhance the performance of the generated pulse data. We compared our proposed model performance with several typical GAN models, including vanilla GAN, deep convolutional GAN (DCGAN) and Wasserstein GAN (WGAN). To verify the feasibility of the proposed algorithm, we trained our model with a dataset of real recorded wrist pulse signals. In conducted experiments, qualitative visual inspection and several quantitative metrics, such as maximum mean deviation (MMD), sliced Wasserstein distance (SWD) and percent root mean square difference (PRD), are examined to measure performance comprehensively. Overall, WGAN-GP achieves the best performance and quantitative results show that the above three metrics can be as low as 0.2325, 0.0112 and 5.8748, respectively. The positive results support that generating wrist pulse data from a small ground truth is possible. Consequently, our proposed WGAN-GP model offers a potential innovative solution to address data scarcity challenge for researchers working with computational pulse diagnosis, which are expected to improve the performance of pulse diagnosis algorithms in the future.
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- 2023
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24. Colour, chemical compounds, and antioxidant capacity of Astragali Radix based on untargeted metabolomics and targeted quantification
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Mei Yang, Minzhen Yin, Shanshan Chu, Yujiao Zhao, Qingying Fang, Ming'en Cheng, Huasheng Peng, and Luqi Huang
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Flavonoids ,Color ,Plant Science ,General Medicine ,Biochemistry ,Antioxidants ,Analytical Chemistry ,Complementary and alternative medicine ,Drug Discovery ,Molecular Medicine ,Metabolomics ,Chromatography, High Pressure Liquid ,Food Science ,Drugs, Chinese Herbal - Abstract
Astragali Radix has been used for over 2000 years in traditional Chinese medicine. Its secondary xylem "Jinjing" and secondary phloem "Yulan" are important for evaluating the quality of the Daodi medicinal material in China. However, its systematic characterisation has not been conducted.This study aims to investigate the colour, chemical compounds, and antioxidant capacity of the secondary xylem and phloem of Astragali Radix on the basis of untargeted metabolomics, broadening the application scope of Astragali Radix in food and pharmaceutical industries.The L*, a*, and b* of the secondary xylem and phloem were measured by colorimetry, and the chemical compounds were identified and quantified by ultra-performance liquid chromatography-quadrupole-time-of-flight mass spectrometry (UPLC-Q-TOF-MS) and high-performance liquid chromatography-diode array detector-evaporative light scattering detection. 2,2-Diphenyl-1-picrylhydrazyl (DPPH) and 2-azino-bis-(3-ethylbenzothiazoline-6-sulphonic acid) (ABTS) assays were conducted to evaluate their antioxidant capacity.Thirty-one compounds were identified by UPLC-Q-TOF-MS. The secondary xylem exhibited high parameter b*, flavonoid content, and antioxidant capacity, while the secondary phloem was rich in astragalosides. The colour parameters of well-defined type A significantly varied from those of the other types. Well-defined type A also exhibited the highest antioxidant activity and flavonoid content, followed by middle type A-like, middle type B-like, and yellow shading type B.The colour parameters, chemical compounds, and antioxidant capacity among the different transverse sections of secondary xylem and phloem varied. The yellow colour of secondary xylem was correlated to high flavonoid content and antioxidant activity, and well-defined type A of Astragali Radix had better quality than other types.
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- 2021
25. Syringenes A-L: Bioactive dimeric eremophilane sesquiterpenoids from Syringa pinnatifolia
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Anni Li, Shungang Jiao, Huiming Huang, Panlong Chen, Ruifei Zhang, Guozhu Su, Jixuan Xu, Changxin Liu, Zhongdong Hu, Suyile Chen, Pengfei Tu, Xingyun Chai, and Luqi Huang
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Molecular Docking Simulation ,Polycyclic Sesquiterpenes ,Molecular Structure ,Organic Chemistry ,Drug Discovery ,Humans ,Syringa ,Molecular Biology ,Biochemistry ,Sesquiterpenes - Abstract
A phytochemical investigation guided by
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- 2021
26. A cytochrome P450 CYP81AM1 from Tripterygium wilfordii catalyses the C-15 hydroxylation of dehydroabietic acid
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Yun Lu, Yifeng Zhang, Jian Wang, Linhui Gao, Yujun Zhao, Ping Su, Lichan Tu, Luqi Huang, Wei Gao, Yan Yin, and Jiadian Wang
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chemistry.chemical_classification ,Oxygenase ,biology ,Cytochrome P450 ,Plant Science ,biology.organism_classification ,Amino acid ,Hydroxylation ,chemistry.chemical_compound ,Enzyme ,chemistry ,Biosynthesis ,Biochemistry ,Genetics ,biology.protein ,Tripterygium wilfordii ,Abietane - Abstract
A novel cytochrome P450 from Tripterygium wilfordii, CYP81AM1, specifically catalyses the C-15 hydroxylation of dehydroabietic acid. This is the first CYP450 to be found in plants with this function. Cytochrome P450 oxygenases (CYPs) play an important role in the post-modification in biosynthesis of plant bioactive terpenoids. Here, we found that CYP81AM1 can catalyze the formation of 15-hydroxydehydroabietic acid by in vitro enzymatic reactions and in vivo yeast feeding assays. This is the first study to show that CYP81 family enzymes are involved in the hydroxylation of abietane diterpenoids. At the same time, we found that CYP81AM1 could not catalyse abietatriene and dehydroabietinol, suggesting that the occurrence of the reaction may be related to the carboxyl group. Through molecular docking and site mutations, it was found that some amino acid sites (F104, K107) near the carboxyl group had an important effect on enzyme activity, also suggesting that the carboxyl group played an important role in the occurrence of the reaction.
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- 2021
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27. Functional characterization and structural bases of two class I diterpene synthases in pimarane-type diterpene biosynthesis
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Changbiao Chi, Donghui Yang, Hongli Jia, Annan Li, Luqi Huang, Jiahui Yu, Qingxia Xu, Zhengdong Wang, Ming Ma, Fuling Yin, Baiying Xing, Xueyang Ma, Tan Liu, Yuanjie Ge, and Juan Guo
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chemistry.chemical_classification ,Diterpene biosynthesis ,Stereochemistry ,Mutagenesis ,Substrate (chemistry) ,General Chemistry ,Carbocation ,Biochemistry ,Terpenoid ,Chemistry ,chemistry.chemical_compound ,Enzyme ,chemistry ,Materials Chemistry ,Environmental Chemistry ,Diterpene ,QD1-999 ,Magnesium ion - Abstract
Pimarane-type diterpenoids are widely distributed in all domains of life, but no structures or catalytic mechanisms of pimarane-type diterpene synthases (DTSs) have been characterized. Here, we report that two class I DTSs, Sat1646 and Stt4548, each accept copalyl diphosphate (CPP) as the substrate to produce isopimara-8,15-diene (1). Sat1646 can also accept syn-CPP and produce syn-isopimaradiene/pimaradiene analogues (2–7), among which 2 possesses a previously unreported "6/6/7" ring skeleton. We solve the crystal structures of Sat1646, Sat1646 complexed with magnesium ions, and Stt4548, thereby revealing the active sites of these pimarane-type DTSs. Substrate modeling and subsequent site-directed mutagenesis experiments demonstrate different structural bases of Sat1646 and Stt4548 for 1 production. Comparisons with previously reported DTSs reveal their distinct carbocation intermediate stabilization mechanisms, which control the conversion of a single substrate CPP into structurally diverse diterpene products. These results illustrate the structural bases for enzymatic catalyses of pimarane-type DTSs, potentially facilitating future DTS engineering and combinatorial biosynthesis. Pimaranes are diterpenoid natural products with poorly characterised biosynthetic pathways. Here pimaranetype diterpenoid synthases are functionally and structurally characterised and shown to exploit distinct modes of intermediate stabilisation.
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- 2021
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28. Chemical‐activity‐based quality marker screening strategy for Viscum articulatum
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Chang-Jiang-Sheng Lai, Ze-Yan Chen, Yanan Wang, Luqi Huang, Zi-Dong Qiu, Xu-Ya Wei, Lan-Ying Chen, Wen-Jing Guo, Li Gong, Guanghong Cui, and Juan Guo
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Antioxidant ,food.ingredient ,Cell Survival ,Parasitic plant ,medicine.medical_treatment ,Clinical Biochemistry ,Market regulation ,Biochemistry ,Antioxidants ,Catechin ,Cell Line ,Analytical Chemistry ,Viscum ,chemistry.chemical_compound ,food ,Triterpenoid ,Ursolic acid ,Limit of Detection ,Drug Discovery ,medicine ,Animals ,Glycosides ,Molecular Biology ,Chromatography, High Pressure Liquid ,Pharmacology ,Chemical activity ,Chromatography ,Traditional medicine ,biology ,Viscum articulatum ,Plant Extracts ,Chemistry ,Reproducibility of Results ,General Medicine ,biology.organism_classification ,Triterpenes ,Rats ,Herb ,Linear Models - Abstract
Viscum articulatum Burm. f. is a parasitic plant rich in flavonoids, triterpenoids, and catechins and has a high nutritional value. It has been reported that consuming V. articulatum can prevent cardiac diseases. In this study, six bioactive compounds, including catechins, triterpenoids, and phenylpropanoid glycosides, were determined in alcohol extracts of the plant using HPLC. The anti-inflammatory and antioxidant activities of three catechins, two triterpenoids, and three combination drugs were measured in cardiomyocytes, and the results showed that the anti-inflammatory activity was significantly enhanced while retaining strong antioxidant activity when epicatechin and ursolic acid were used in combination. The main quality markers epicatechin and ursolic acid were screened based on the specificity of the genuine herb and a potent synergistic effect, and the lowest limitation contents of V. articulatum which could discriminate it from some other taxonomically similar materials were accordingly determined. This self-built lowest limitation content of the two screened quality markers could quickly and accurately reflect the efficacy in terms of chemical composition and reverse the disorderly market use of nongenuine herbs or confusing species for adulteration. This study is of some significance for market regulation, drug development, and clinical medication.
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- 2021
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29. Identification and functional characterization of squalene epoxidases and oxidosqualene cyclases from Tripterygium wilfordii
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Yuan Liu, Jie Gao, Luqi Huang, Linhui Gao, Lichan Tu, Jiawei Zhou, Tianyuan Hu, Yun Lu, and Wei Gao
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0106 biological sciences ,0301 basic medicine ,Tripterygium ,Squalene monooxygenase ,Saccharomyces cerevisiae ,Plant Science ,Biology ,Genes, Plant ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Squalene ,Gene Expression Regulation, Plant ,CRISPR ,Intramolecular Transferases ,Phylogeny ,General Medicine ,biology.organism_classification ,Triterpenes ,Yeast ,Biosynthetic Pathways ,Complementation ,Sterols ,030104 developmental biology ,Squalene Monooxygenase ,chemistry ,Biochemistry ,Cycloartenol ,Heterologous expression ,Tripterygium wilfordii ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
We cloned two squalene epoxidases and five oxidosqualene cyclases, and identified their function using CRISPR/Cas9 tool and yeast heterologous expression. Triterpenes are the main active ingredients of Tripterygium wilfordii Hook.f., a traditional Chinese medicinal plant with many encouraging preclinical applications. However, the biosynthetic pathways of triterpenes in this plant are poorly understood. Here, we report on the isolation and identification of two squalene epoxidases (SQE6 and SQE7) and five oxidosqualene cyclases (OSC4-8) from T. wilfordii. Yeast complementation assays showed that TwSQE6 and TwSQE7 can functionally complement an erg1 yeast mutant that was constructed using the CRISPR/Cas9 system. The putative OSC genes were functionally characterized by heterologous expression in yeast. GC/MS analysis of the fermentation products of the transgenic yeast showed that both TwOSC4 and TwOSC6 are cycloartenol synthases, while TwOSC8 is a β-amyrin synthase. The discovery of these genes expands our knowledge of key enzymes in triterpenoid biosynthesis, and provides additional target genes for increasing the production of triterpenes in T. wilfordii tissue cultures by disrupting competing pathways, or in chassis cells by reconstituting the triterpenoid biosynthetic pathway.
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- 2019
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30. The gibberellin 13-oxidase that specifically converts gibberellin A9 to A20 in Tripterygium wilfordii is a 2-oxoglutarate-dependent dioxygenase
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Luqi Huang, Wei Gao, Yujun Zhao, Yuru Tong, Jiawei Zhou, Yifeng Zhang, Ping Su, Xiaoyi Wu, and Tianyuan Hu
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,Oxygenase ,Oxidase test ,Methyl jasmonate ,biology ,Chemistry ,Plant Science ,Triptolide ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Enzyme ,Biochemistry ,Dioxygenase ,Genetics ,Gibberellin ,Tripterygium wilfordii ,010606 plant biology & botany - Abstract
A novel GA13-oxidase ofTripterygium wilfordii, TwGA13ox, is a 2-oxoglutarate-dependent dioxygenase. It specifically catalyzes the conversion of GA9to GA20, but not GA4to GA1. Gibberellins (GAs) play essential roles in plant growth and development. Previous characterization of GA20- and GA3-oxidases yielded a large number of genetic elements that can interconvert different GAs. However, enzymes that catalyze the 13-hydroxylation step are rarely identified. Here, we report that the GA13-oxidase of Tripterygium wilfordii, TwGA13ox, is a 2-oxoglutarate-dependent dioxygenase instead of reported cytochrome P450 oxygenases, among 376 differential proteins in comparative proteomics. Phylogenetic analysis showed that the enzyme resides in its own independent branch in the DOXC class. Unexpectedly, it specifically catalyzes the conversion of GA9 to GA20, but not GA4 to GA1. Contrary to the previous research, TwGA13ox transcriptional expression was upregulated ~ 146 times by exogenous application of methyl jasmonate (MeJA). RNAi targeting of TwGA13ox in T. wilfordii led to an 89.9% decrease of triptolide, a diterpenoid epoxide with extensive anti-inflammatory and anti-tumor properties. In subsequent MeJA supplementation experiments, triptolide production increased 13.4-times. TwGA13ox displayed root-specific expression. Our results provide a new GA13-oxidase from plants and elucidate the metabolic associations within the diterpenoid biosynthetic pathway (GAs, triptolide) at the genetic level.
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- 2019
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31. Elucidation of metabolite isomers of Leonurus japonicus and Leonurus cardiaca using discriminating metabolite isomerism strategy based on ultra-high performance liquid chromatography tandem quadrupole time-of-flight mass spectrometry
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Luqi Huang, Rui-Feng Ji, Lan-Ping Guo, Thomas Avery Garran, Chang-Jiang-Sheng Lai, Dongmei Xie, and Jin-Long Chen
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Chromatography ,biology ,Elution ,Metabolite ,Organic Chemistry ,Leonurus japonicus ,Reproducibility of Results ,General Medicine ,Phenylethanoid ,Leonurus cardiaca ,Mass spectrometry ,biology.organism_classification ,Biochemistry ,Analytical Chemistry ,chemistry.chemical_compound ,Leonurus ,Isomerism ,chemistry ,Tandem Mass Spectrometry ,Metabolome ,Structural isomer ,Chromatography, Liquid ,Drugs, Chinese Herbal - Abstract
The isomer structural discrimination is a significant challenge in metabolome analysis based on ultrahigh performance liquid chromatography tandem high-resolution mass spectrometry (UHPLC-HRMS). In this study, a new discriminating metabolite isomerism strategy is proposed to elucidate the metabolome, especially the isomers, of Leonurus japonicus and Leonurus cardiaca. This strategy consists of three steps. First, the metabolite biosynthesis pathways are constructed based on a home-built compound database to rapidly profile the compounds of interest using the multiple diagnostic product ions (DPIs) screening analysis and binary comparison based on SUMPRODUCT function. Second, the fragmentation patterns (e.g. the high-resolution DPIs, DPI ratios) and chromatographic elution order are defined based on scattered reference chromatographic and mass spectrometry data, calculated lipophilicity parameters, molecular hydrogen bond analysis, and chemical reference standards. Finally, all discovered isomerisms are mapped with the defined applicable rules and the isomers are identified conveniently. Using this strategy, a total of 257 compounds were tentatively characterized, including 212 potential novel compounds and 67 pairs of cis-, trans-, and positional isomers of flavonoids, phenylethanoid glycosides, glucaric acids, novel quinic acids, and esters of fatty acids. Moreover, 56 characteristic markers were identified to discriminate these two herbal medicines. This strategy may significantly improve the efficiency and reliability of identifying isomers found in metabolite biosynthesis pathways.
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- 2019
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32. Isolation and characterization of a glycosyltransferase with specific catalytic activity towards flavonoids from Tripterygium wilfordii
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Yun Lu, Baowei Ma, Lichan Tu, Jie Gao, Yu-He Tu, Luqi Huang, Tianyuan Hu, Jiawei Zhou, Zhao-Shou Lin, Yuan Liu, and Wei Gao
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Flavonoid ,Pharmaceutical Science ,Molecular cloning ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Drug Discovery ,Glycosyltransferase ,heterocyclic compounds ,Medicinal plants ,Pharmacology ,chemistry.chemical_classification ,Pinocembrin ,biology ,010405 organic chemistry ,fungi ,Organic Chemistry ,food and beverages ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Complementary and alternative medicine ,Biochemistry ,chemistry ,biology.protein ,Molecular Medicine ,Heterologous expression ,Tripterygium wilfordii ,Quercetin - Abstract
Flavonoids are important secondary metabolites that exist in many medicinal plants. Flavonoid glycosyltransferases can transfer sugar moieties to their parent rings, producing various flavonoid glycosides with significant pharmacological activities. Here, we report the molecular cloning of the O-glycosyltransferase TwUGT2 from Tripterygium wilfordii and its catalytic activity was explored by heterologous expression in E. coli. The results showed that TwUGT2 has specific glycosyltransferase activity towards C-3 and 7 hydroxyl groups of flavonoids, thereby converting quercetin and pinocembrin into isoquercitrin and pinocembrin 7-O-beta-D-glucoside, respectively. The identification of TwUGT2 will provide a useful molecular tool for synthetic biology and contribute to drug discovery.[Formula: see text].
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- 2019
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33. Purification, characterization and immunomodulatory activity of fructans from Polygonatum odoratum and P. cyrtonema
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Ping Zhao, Huifang Zhou, Chengcheng Zhao, Xia Li, Ying Wang, Luqi Huang, and Wenyuan Gao
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Polymers and Plastics ,Cell Survival ,02 engineering and technology ,010402 general chemistry ,Polysaccharide ,01 natural sciences ,Mice ,chemistry.chemical_compound ,Residue (chemistry) ,Fructan ,Phagocytosis ,Materials Chemistry ,Side chain ,Animals ,Immunologic Factors ,Viability assay ,chemistry.chemical_classification ,Molecular mass ,biology ,Interleukin-6 ,Polygonatum ,Organic Chemistry ,Fructose ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Fructans ,0104 chemical sciences ,Molecular Weight ,Polygonatum odoratum ,RAW 264.7 Cells ,Carbohydrate Sequence ,Biochemistry ,chemistry ,0210 nano-technology - Abstract
Two neutral polysaccharides named POP-1 and PCP-1 were purified from Polygonatum odoratum and P. cyrtonema, respectively. Results showed that both of them were composed of fructose and glucose, and the average molecular weights of them were about 5 kDa. FT-IR, 1D- and 2D-NMR analyses revealed that both POP-1 and PCP-1 contained a (2→1)-linked β- d -fructofuranose (Fruf) backbone and (2→6)-linked β- d -Fruf side chains with an internal α- d -glucopyranose (Glcp) in neokestose form. The difference between these two purified polysaccharides were that PCP-1 possessed of an acetyl group attached at O-3 of α- d -Glcp residue. In addition, PCP-1 exhibited a little better immune stimulating activity than POP-1 on cell viability and IL-6 production of RAW 264.7 macrophages. These results indicated that the acetyl group might affect the immunoregulatory activity and PCP-1 have more potential to be explored as an immunomodulatory agent.
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- 2019
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34. Application of near infrared spectroscopy for rapid determination the geographical regions and polysaccharides contents of Lentinula edodes
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Shui-Han Zhang, Xie Yi, Chen-xi Zhao, Luqi Huang, Hua-Lin Xie, Yi Yu, Rongrong Zhou, and Jianhua Huang
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Time Factors ,Materials science ,Shiitake Mushrooms ,02 engineering and technology ,Polysaccharide ,Biochemistry ,Chemometrics ,Root mean square ,03 medical and health sciences ,Structural Biology ,Calibration ,Spectroscopy ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Spectroscopy, Near-Infrared ,Chromatography ,Geography ,biology ,Near-infrared spectroscopy ,Fungal Polysaccharides ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Lentinula ,chemistry ,Nir spectra ,0210 nano-technology - Abstract
In this study, a calibration model based on Near-infrared spectroscopy (NIR) technique and chemometrics method was developed for rapid and non-destructive detecting the polysaccharide contents of lentinula edodes samples collected from different regions. The polysaccharide contents of these samples were firstly determined by standard phenol-sulphruic acid method. Then, NIR spectra of these samples were collected by using Fourier transform infrared spectrometry. Based on these experimental data, a random forest method was further used to distinguish the regions of these samples, with a classification accuracy of 96.6%. After that, a rapid, accurate, and quantitative model was established for predicting the polysaccharide contents of these samples. In the model establishing process, some signal pre-treatment methods were optimized, and the validation results with highest determination coefficient (R2) and low root mean square errors of prediction (RMSEP) were, 0.925 and 0.720, respectively. These results showed that combined NIR technique with chemometrics was an effective and green method for lentinula edodes quality control.
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- 2019
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35. Cytochrome P450 catalyses the 29-carboxyl group formation of celastrol
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Yun Lu, Yadi Song, Tianyuan Hu, Lichan Tu, Yujun Zhao, Jiawei Zhou, Xiaoyi Wu, Wei Gao, Luqi Huang, Yuan Liu, Yuru Tong, Yifeng Zhang, and Ping Su
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biology ,Chemistry ,Tripterygium ,Friedelin ,Mutagenesis ,Cytochrome P450 ,Plant Science ,General Medicine ,Horticulture ,Monooxygenase ,biology.organism_classification ,Biochemistry ,Catalysis ,Triterpenes ,Molecular Docking Simulation ,chemistry.chemical_compound ,Biosynthesis ,Cytochrome P-450 Enzyme System ,Celastrol ,biology.protein ,Tripterygium wilfordii ,Heterologous expression ,Pentacyclic Triterpenes ,Molecular Biology - Abstract
Celastrol, a potent anticancer and anti-obesity drug, was first isolated from Tripterygium wilfordii Hook. f. and it is produced in small quantities in many members of the Celastraceae family. The heterologous reconstitution of celastrol biosynthesis could be a promising method for the efficient production of celastrol and natural and unnatural derivatives thereof, yet only part of the biosynthetic pathway is known. Here, we report a cytochrome P450 monooxygenase (TwCYP712K1) from T. wilfordii that performs the three-step oxidation of friedelin to polpunonic acid in the celastrol pathway. Heterologous expression of TwCYP712K1 showed that TwCYP712K1 catalyses not only the transformation of friedelin to polpunonic acid but also the oxidation of β-amyrin or α-amyrin. The role of TwCYP712K1 in the biosynthesis of celastrol was further revealed via RNA interference. Some key residues of TwCYP712K1 were also screened by molecular docking and site-directed mutagenesis. Our results lay a solid foundation for further elucidating the biosynthesis of celastrol and related triterpenoids.
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- 2021
36. The global profiling of alkaloids in Aconitum stapfianum and analysis of detoxification material basis against Fuzi
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Sisi Liu, Jinlong Chen, Weiran Yang, Qi Ren, Yihong Long, Chang-Jiang-Sheng Lai, and Luqi Huang
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Stereochemistry ,010402 general chemistry ,Mass spectrometry ,01 natural sciences ,Biochemistry ,Plant Roots ,Analytical Chemistry ,Aconitum carmichaelii ,Alkaloids ,Detoxification ,Structural isomer ,Drug Interactions ,Aconitum stapfianum ,Aconitum ,Chromatography, High Pressure Liquid ,Chromatography ,biology ,Chemistry ,Plant Extracts ,010401 analytical chemistry ,Organic Chemistry ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,Principal component analysis ,Diterpenes ,Drugs, Chinese Herbal - Abstract
Aconitum alkaloids are versatile in chemical structures and are well known for their bioactivity and toxicity. Cases of analogs with closely similar structures or positional isomers are widespread in herbs of the Aconitum genus. It is still challenging to rapidly identify unknown compounds via mass spectrometry, especially positional isomers. Herein, to profile the alkaloids of Aconitum stapfianum that possess bioactivity against intoxication by the lateral root of Aconitum carmichaelii (Fuzi), a strategy was developed by carefully determining the fragmentation pathways of authentic standards. A series of rules was summarized and involved charge site effects, hydrogen bonding effects, competitive channels between charge-remote reactions and charge migration reactions, and fragment patterns exhibiting a "diamond shape". Accordingly, a total of 124 alkaloids in A. stapfianum were tentatively characterized, including 85 potential new compounds and 24 sets of isomers. On the other hand, to explore the material basis of detoxification, a chemical constituent comparison was made between A. stapfianum and Fuzi, and principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA) were performed to identify markers that were different between the two . In total, 25 characteristic markers were identified to discriminate between these two herbal medicines, of which 14 compounds were specific for A. stapfianum and most of them were characteristic for a para-substituted benzoic acid ester at C-14.
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- 2021
37. Preparation and characterization of native and autoclaving-cooling treated Pinellia ternate starch and its impact on gut microbiota
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Lan-Ping Guo, Wenyuan Gao, Xinyang Li, Luqi Huang, Xueqian Zhang, Wenna Yang, and Xia Li
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food.ingredient ,Starch ,Pinellia ,02 engineering and technology ,Gut flora ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Feces ,food ,Functional food ,Structural Biology ,RNA, Ribosomal, 16S ,Spectroscopy, Fourier Transform Infrared ,Food science ,Resistant starch ,Molecular Biology ,Phylogeny ,030304 developmental biology ,0303 health sciences ,biology ,Bacteria ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,In vitro digestion ,Fatty Acids, Volatile ,Gastrointestinal Microbiome ,Cold Temperature ,chemistry ,Solubility ,Fermentation ,Thermogravimetry ,Composition (visual arts) ,0210 nano-technology ,Crystallization - Abstract
The aim of this study was to investigate and compare the structural and physicochemical properties of native Banxia starch (BXS) and autoclaving-cooling treated Banxia starch (CTBXS) and its related impacts on production of short chain fatty acids (SCFAs) and human gut microbiota by in vitro fecal fermentation. BXS had semicircle to spherical granules, whereas CTBXS exhibited block-shape. According to XRD and TGA, BXS had a C-type crystalline pattern, while CTBXS had a B-type crystalline pattern. CTBXS had better thermal stability than BXS. In addition, BXS exhibited significantly higher solubility and swelling power than CTBXS, and CTBXS had higher content of SDS than BXS. Moreover, BXS and CTBXS could change the composition and abundance of gut microbiota, could also promote the production of SCFAs. This study is beneficial to well understand the in vitro digestion and fecal fermentation behaviors of BXS and CTBXS, and can be developed as a potential functional food with the aim of improving colonic health.
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- 2021
38. Molecular cloning and functional characterization of multiple ApOSCs from Andrographis paniculata
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Luqi Huang, Juan Guo, Jian Yang, Jian Wang, Xiao-Yi Wu, Hui-Xin Lin, Wei Gao, Huan Zhao, and Ping Su
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Squalene ,Molecular cloning ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Triterpenoid ,Drug Discovery ,Cloning, Molecular ,Oleanolic Acid ,Oleanolic acid ,biology ,ATP synthase ,010405 organic chemistry ,Biological activity ,General Medicine ,biology.organism_classification ,Triterpenes ,0104 chemical sciences ,Biosynthetic Pathways ,Complementary and alternative medicine ,chemistry ,Biochemistry ,030220 oncology & carcinogenesis ,biology.protein ,Andrographis ,Pentacyclic Triterpenes ,Andrographis paniculata - Abstract
Triterpenoids have been described in Andrographis paniculata. Oleanolic acid exhibits high biological activity and is widely used in the clinic, and β-sitosterol not only has good biological activity but also plays an important physiological role in plants. However, analysis of the biosynthetic pathway of triterpenoids in Andrographis paniculata has not been reported. Here, we provide the first report of the isolation and identification of nine 2, 3-oxidosqualene cyclases (ApOSC3 to ApOSC11) from A. paniculata. The results showed that ApOSC4 represented a monofunctional synthase that could convert 2, 3-oxidosqualene to β-amyrin. ApOSC5 as a bifunctional 2, 3-oxidosqualene cyclases, could transfer 2, 3-oxidosqualene to β-amyrin and α-amyrin. ApOSC6 to ApOSC8 composed the multifunctional 2, 3-oxidosqualene cyclases that could convert 2, 3-oxidosqualene to β-amyrin, α-amyrin and one or two undetermined triterpenoids. This study provides a better understanding of the biosynthetic pathway of triterpenoids in A. paniculata, and the discovery of multifunctional 2, 3-oxidosqualene cyclases ApOSC5 to ApOSC8 of the facilitates knowledge of the compounds diversity in A. paniculata.
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- 2020
39. Functional Integration of Two CYP450 Genes Involved in Biosynthesis of Tanshinones for Improved Diterpenoid Production by Synthetic Biology
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Wen Zeng, Xiaohui Ma, Juan Guo, Yong Li, Min Chen, Chang-Jiang-Sheng Lai, Junling Bu, Yanqin Xu, Guanghong Cui, Ye Shen, Ya-Ping Mao, Jinfu Tang, Baolong Jin, Ying Ma, Qishuang Li, Yujun Zhao, Tong Chen, Yanan Wang, and Luqi Huang
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0106 biological sciences ,Mutant ,Biomedical Engineering ,Salvia miltiorrhiza ,Saccharomyces cerevisiae ,Genes, Plant ,Protein Engineering ,01 natural sciences ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Catalysis ,Hydroxylation ,03 medical and health sciences ,chemistry.chemical_compound ,Synthetic biology ,Cytochrome P-450 Enzyme System ,010608 biotechnology ,Catalytic Domain ,Homology modeling ,Secondary metabolism ,030304 developmental biology ,Plant Proteins ,chemistry.chemical_classification ,0303 health sciences ,biology ,Active site ,General Medicine ,Protein engineering ,Enzyme ,Biochemistry ,chemistry ,Metabolic Engineering ,Abietanes ,biology.protein ,Synthetic Biology ,Diterpenes - Abstract
Cytochrome P450s (CYPs) are important enzymes in the secondary metabolism of plants and have been recognized as key players in bioengineering and synthetic biology. Previously reported CYP76AH1 and CYP76AH3, having greater than 80% sequence homology, played a continuous catalytic role in the biosynthesis of tanshinones in Salvia miltiorrhiza. Homology modeling indicates that four sites might be responsible for differences in catalytic activity between the two enzymes. A series of modeling-based mutational variants of CYP76AH1 were designed to integrate the functions of the two CYPs. The mutant CYP76AH1D301E,V479F, which integrated the functions of CYP76AH1 and CYP76AH3, was found to efficiently catalyze C11 and C12 hydroxylation and C7 oxidation of miltiradiene substrates. Integration and utilization of CYP76AH1D301E,V479F by synthetic biology methods allowed the robust production of 11-hydroxy ferruginol, sugiol, and 11-hydroxy sugiol in yeast. The functionally integrated CYP gene after active site modifications improves catalytic efficiency by reducing the transfer of intermediate metabolites between component proteins. This provides a synthetic biology reference for improving the catalytic efficiencies of systems that produce plant natural products in microorganisms.
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- 2020
40. UPLC–ESI–Q‐TOF–MS/MS analysis of anticancer fractions from Ophiocordyceps xuefengensis and Ophiocordyceps sinensis
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Luqi Huang, Shuihan Zhang, You Qin, Yahui Zhao, Jun Shu, Hao Liu, Rongrong Zhou, Jian Jin, Jing Xie, and Ping Cai
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Spectrometry, Mass, Electrospray Ionization ,Clinical Biochemistry ,Ethyl acetate ,Ophiocordyceps sinensis ,Antineoplastic Agents ,Tandem mass spectrometry ,Biochemistry ,High-performance liquid chromatography ,Analytical Chemistry ,chemistry.chemical_compound ,Tandem Mass Spectrometry ,Cell Line, Tumor ,Drug Discovery ,Humans ,MTT assay ,Molecular Biology ,Chromatography, High Pressure Liquid ,Pharmacology ,Biological Products ,Chromatography ,biology ,Chemistry ,Ms analysis ,General Medicine ,biology.organism_classification ,Ophiocordyceps xuefengensis ,Cordyceps ,Hypocreales ,Uplc esi q tof ms - Abstract
Ophiocordyceps xuefengensis (O. xuefengensis), a new species of caterpillar fungus, has been identified as the sister taxon of Ophiocordyceps sinensis (O. sinensis). The aims of the present study are to evaluate the anticancer activity and to qualitatively analyze the potential bioactive chemical constituents of O. xuefengensis and O. sinensis, comparatively. An MTT assay was used to evaluate the in vitro anticancer activities of different fractions from O. xuefengensis and O. sinensis. The results show that ethyl acetate fractions of O. xuefengensis and O. sinensis have significant in vitro anticancer activity. These two bioactive fractions were analyzed by ultra-performance liquid chromatography-electrospray ionization with quadrupole-time of flight tandem mass spectrometry technology. A total of 82 compounds and 101 compounds were identified or tentatively characterized in the bioactive fractions of O. xuefengensis and O. sinensis, respectively. Among these compounds, 68 existed in both O. xuefengensis and O. sinensis. A total of 67 compounds were reported in O. xuefengensis and 8 compounds were reported in caterpillar fungus for the first time. This is the first detailed comparative analysis of the in vitro anticancer activity and chemical ingredients between O. xuefengensis and O. sinensis. The application of this work will provide reliable fundamental pharmacological substances for the use of O. xuefengensis by Yao people.
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- 2020
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41. Genome of Tripterygium wilfordii and identification of cytochrome P450 involved in triptolide biosynthesis
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Cao Xu, Lichan Tu, Tianyuan Hu, Jian Yang, Jiawei Zhou, Zhongren Zhang, Yuan Liu, Yujun Zhao, Jiadian Wang, Wei Gao, Yun Lu, Ping Su, Yifeng Zhang, Reuben J. Peters, Meirong Jia, Yadi Song, Yuru Tong, Luqi Huang, and Linhui Gao
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0106 biological sciences ,0301 basic medicine ,General Physics and Astronomy ,01 natural sciences ,Genome ,chemistry.chemical_compound ,Cytochrome P-450 Enzyme System ,lcsh:Science ,Phylogeny ,Plant Proteins ,Multidisciplinary ,biology ,food and beverages ,Bioproduction ,Biochemistry ,Metabolome ,Diterpenes ,Oxidation-Reduction ,Genome, Plant ,Tripterygium ,Science ,Article ,General Biochemistry, Genetics and Molecular Biology ,Metabolic engineering ,03 medical and health sciences ,Humans ,Author Correction ,Gene ,Plants, Medicinal ,Gene Expression Profiling ,fungi ,Cytochrome P450 ,General Chemistry ,Phenanthrenes ,Triptolide ,biology.organism_classification ,Antineoplastic Agents, Phytogenic ,Biosynthetic Pathways ,Gene expression profiling ,030104 developmental biology ,chemistry ,Abietanes ,biology.protein ,Epoxy Compounds ,lcsh:Q ,Tripterygium wilfordii ,Secondary metabolism ,Drugs, Chinese Herbal ,010606 plant biology & botany - Abstract
Triptolide is a trace natural product of Tripterygium wilfordii. It has antitumor activities, particularly against pancreatic cancer cells. Identification of genes and elucidation of the biosynthetic pathway leading to triptolide are the prerequisite for heterologous bioproduction. Here, we report a reference-grade genome of T. wilfordii with a contig N50 of 4.36 Mb. We show that copy numbers of triptolide biosynthetic pathway genes are impacted by a recent whole-genome triplication event. We further integrate genomic, transcriptomic, and metabolomic data to map a gene-to-metabolite network. This leads to the identification of a cytochrome P450 (CYP728B70) that can catalyze oxidation of a methyl to the acid moiety of dehydroabietic acid in triptolide biosynthesis. We think the genomic resource and the candidate genes reported here set the foundation to fully reveal triptolide biosynthetic pathway and consequently the heterologous bioproduction., Tripterygium wilfordii is a medical plant that can produce antitumor activity compound triptolide. Here, the authors assemble its genome and identify a cytochrome P450 that can catalyze oxidation of a methyl to the acid moiety of dehydroabietic acid in triptolide biosynthesis by integrating multi-omics data.
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- 2020
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42. Probing the function of protein farnesyltransferase in Tripterygium wilfordii
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Wei Gao, Yujun Zhao, Ping Su, Jian Wang, Yifeng Zhang, Tianyuan Hu, Luqi Huang, Linhui Gao, Lichan Tu, Shuang Liu, Baowei Ma, Xihong Liu, Jiawei Zhou, and Hongyu Guan
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0106 biological sciences ,0301 basic medicine ,Tripterygium ,Farnesyltransferase ,Mutant ,Plant Science ,Genes, Plant ,01 natural sciences ,Fluorescence ,Gene Expression Regulation, Enzymologic ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Gene expression ,Amino Acid Sequence ,RNA, Messenger ,Phylogeny ,chemistry.chemical_classification ,Alkyl and Aryl Transferases ,biology ,Sequence Analysis, DNA ,General Medicine ,Subcellular localization ,biology.organism_classification ,Protein Transport ,030104 developmental biology ,Enzyme ,Biochemistry ,chemistry ,biology.protein ,Protein farnesylation ,Tripterygium wilfordii ,Agronomy and Crop Science ,Function (biology) ,Protein Binding ,010606 plant biology & botany - Abstract
We found two subunits FTase/GGTaseI-α and FTase-β formed a heterodimer to transfer a farnesyl group from FPP to protein N-dansyl-GCVLS, confirming they are responsible for protein farnesylation in planta. Tripterygium wilfordii is a medicinal plant with a broad spectrum of anti-inflammatory, immunosuppressive and anti-cancer activities. Recently, a number of studies have focused on investigating the biosynthetic pathways of its bioactive compounds, whereas little attention has been paid to the enzymes which play important roles in regulating diverse developmental processes of T. wilfordii. In this study, we report for the first time the identification and characterization of two subunits of farnesyltransferase (FTase), farnesyltransferase/geranylgeranyltransferase I-α (TwFTase/GGTase I-α) and farnesyltransferase-β (TwFTase-β), in this important medicinal plant. Cell-free in vivo assays, yeast two-hybrid (Y2H) and pull-down assays showed that the two subunits interact with each other to form a heterodimer to perform the role of specifically transferring a farnesyl group from FPP to the CAAX-box protein N-dansyl-GCVLS. Furthermore, we discovered that the two subunits had the same cytoplasmic localization pattern and displayed the same tissue expression pattern. These results indicated that we identified a functional TwFTase enzyme which contains two functionally complementary subunits TwFTase/GGTase I-α and TwFTase-β, which provides us promising genetic targets to construct transgenic plants or screen for more adaptable T. wilfordii mutants, which are able to survive in changing environments.
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- 2018
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43. Glucosyltransferase Capable of Catalyzing the Last Step in Neoandrographolide Biosynthesis
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Chang-Jiang-Sheng Lai, Juan Guo, Luqi Huang, Jian Wang, Huixin Lin, Yong Li, Wei Gao, Jian Yang, Baowei Ma, Xing Wang, Xin-Lin Li, Jinfu Tang, and Li Yuan
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Glycosylation ,Tetrahydronaphthalenes ,Stereochemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Glucosides ,Biosynthesis ,Glycosyltransferase ,Moiety ,Physical and Theoretical Chemistry ,biology ,010405 organic chemistry ,Drug discovery ,Chemistry ,Organic Chemistry ,Glycogen Debranching Enzyme System ,biology.organism_classification ,0104 chemical sciences ,Kinetics ,Biocatalysis ,biology.protein ,Andrographis ,Glucosyltransferase ,Diterpenes ,Diterpene ,Andrographis paniculata - Abstract
ApUGT, a diterpene glycosyltransferase from Andrographis paniculata, could transfer a glucose to the C-19 hydroxyl moiety of andrograpanin to form neoandrographolide. This glycosyltransferase has a broad substrate scope, and it can glycosylate 26 natural and unnatural compounds of different structural types. This study provides a basis for exploring the glycosylation mechanism of ent-labdane-type diterpenes and plays an important role in diversifying the structures used in drug discovery.
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- 2018
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44. Eudesmane-type sesquiterpene diols directly synthesized by a sesquiterpene cyclase in Tripterygium wilfordii
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Yujun Zhao, Wei Gao, Yu-ru Tong, Tianyuan Hu, Hongyu Guan, Jin-long Chen, Yifeng Zhang, Ping Su, Luqi Huang, Linhui Gao, and Xianan Zhang
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0301 basic medicine ,biology ,Stereochemistry ,Diol ,Cell Biology ,Nuclear magnetic resonance spectroscopy ,Sesquiterpene ,biology.organism_classification ,Biochemistry ,Terpenoid ,Metabolic engineering ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Biosynthesis ,chemistry ,Nucleophile ,Tripterygium wilfordii ,Molecular Biology - Abstract
Cryptomeridiol, a typical eudesmane diol, is the active principle component of the antispasmodic Proximol. Although it has been used for many years, the biosynthesis pathway of cryptomeridiol has remained blur. Among terpenoid natural products, terpenoid cyclases are responsible for cyclization and generation of hydrocarbon backbones. The cyclization is mediated by carbocationic cascades and ultimately terminated via deprotonation or nucleophilic capture. Isoprene precursors are, respectively, converted into hydrocarbons or hydroxylated backbones. A sesquiterpene cyclase in Tripterygium wilfordii (TwCS) was determined to directly catalyze (E,E)-farnesyl pyrophosphate (FPP) to unexpected eudesmane diols, primarily cryptomeridiol. The function of TwCS was characterized by a modular pathway engineering system in Saccharomyces cerevisiae. The major product determined by NMR spectroscopy turned out to be cryptomeridiol. This unprecedented production was further investigated in vitro, which verified that TwCS can directly produce eudesmane diols from FPP. Some key residues for TwCS catalysis were screened depending on the molecular model of TwCS and mutagenesis studies. As cryptomeridiol showed a small amount of volatile and medicinal properties, the biosynthesis of cryptomeridiol was reconstructed in S. cerevisiae. Optimized assays including modular pathway engineering and the CRISPR–cas9 system were successfully used to improve the yield of cryptomeridiol in the S. cerevisiae. The best engineered strain TE9 (BY4741 erg9::Δ-200-176 rox1::mut/pYX212-IDI + TwCS/p424-tHMG1) ultimately produced 19.73 mg/l cryptomeridiol in a shake flask culture.
- Published
- 2018
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45. Characterization of UDP-Glycosyltransferase Involved in Biosynthesis of Ginsenosides Rg1 and Rb1 and Identification of Critical Conserved Amino Acid Residues for Its Function
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Lu Yao, Wenxia Liang, Wenyuan Gao, Shujie Liu, Shihui Wang, Yan-Ying Hu, Jinxin Li, Yu-Jie Dai, Luqi Huang, Juan Wang, and Jun Lu
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,biology ,Saccharomyces cerevisiae ,Glycoside ,General Chemistry ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Ginseng ,030104 developmental biology ,Enzyme ,chemistry ,Biochemistry ,Biosynthesis ,Ginsenoside ,Homology modeling ,General Agricultural and Biological Sciences ,Function (biology) ,010606 plant biology & botany - Abstract
Ginsenosides attract great attention for their bioactivities. However, their contents are low, and many UDP-glycosyltransferases (UGTs) that play crucial roles in the ginsenoside biosynthesis pathways have not been identified, which hinders the biosynthesis of ginsenosides. In this study, we reported that one UDP-glycosyltransferase, UGTPg71A29, from Panax ginseng could glycosylate C20-OH of Rh1 and transfer a glucose moiety to Rd, producing ginsenosides Rg1 and Rb1, respectively. Ectopic expression of UGTPg71A29 in Saccharomyces cerevisiae stably generated Rg1 and Rb1 under its corresponding substrate. Overexpression of UGTPg71A29 in transgenic cells of P. ginseng could significantly enhance the accumulation of Rg1 and Rb1, with their contents of 3.2- and 3.5-fold higher than those in the control, respectively. Homology modeling, molecular dynamics, and mutational analysis revealed the key catalytic site, Gln283, which provided insights into the catalytic mechanism of UGTPg71A29. These results not only provide an efficient enzymatic tool for the synthesis of glycosides but also help achieve large-scale industrial production of glycosides.
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- 2018
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46. Radical scavenging activity of sulfated Bupleurum chinense polysaccharides and their effects against oxidative stress-induced senescence
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Mingjiang Wu, Xiaoli Zheng, Xu Zhang, Luqi Huang, Jian Liu, Haibin Tong, Ting Ren, and Jianxi Song
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0301 basic medicine ,Bupleurum ,Antioxidant ,Polymers and Plastics ,DPPH ,medicine.medical_treatment ,02 engineering and technology ,Polysaccharide ,High-performance liquid chromatography ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Sulfation ,Polysaccharides ,Materials Chemistry ,medicine ,Animals ,Lung ,Cellular Senescence ,chemistry.chemical_classification ,biology ,Sulfates ,Organic Chemistry ,Endothelial Cells ,Free Radical Scavengers ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Oxidative Stress ,030104 developmental biology ,chemistry ,Biochemistry ,Bupleurum chinense ,Hydroxyl radical ,0210 nano-technology - Abstract
In this study, BCPS-1, a polysaccharide previously isolated and characterized from Bupleurum chinense was chemically modified to yield two sulfated derivatives, which we designated as S-BCP1-4 and S-BCP1-8. The physicochemical properties of these sulfated derivatives were then determined by high performance liquid chromatography (HPLC), Fourier transform infrared spectrometry (FT-IR), and gas chromatography (GC), and then compared with those of BCPS-1. Furthermore, the antioxidant activities of all three polysaccharides were also evaluated using 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical assay, superoxide radical assay and hydroxyl radical assay, while their effects against H2O2-induced cellular senescence were determined using senescence-associated β-galactosidase (SA-β-gal) staining, cell cycle assay and immunoblotting in H2O2-induced mouse lung endothelial cells (MLECs). Compared to BCPS-1, S-BCP1-4 and S-BCP1-8 exhibited remarkable antioxidant effect, and in a concentration-dependent manner. They also provided stronger protection against H2O2-induced cellular senescence in MLECs. These results indicated that the sulfate group in the modified B. chinense polysaccharides might play an important role in radical scavenging and resistance to H2O2-induced senescence. These sulfated polysaccharides could be considered as novel pharmaceutical products with potential antioxidant and anti-senescence effects.
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- 2018
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47. A multifunctional oxidosqualene cyclase from Tripterygium regelii that produces both α- and β-amyrin
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Yun Lu, Luqi Huang, Yifeng Zhang, Ping Su, Jiadian Wang, Tianyuan Hu, Wei Gao, and Jiawei Zhou
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0301 basic medicine ,chemistry.chemical_classification ,Amyrin ,ATP synthase ,biology ,General Chemical Engineering ,Tripterygium regelii ,General Chemistry ,biology.organism_classification ,03 medical and health sciences ,chemistry.chemical_compound ,Open reading frame ,030104 developmental biology ,Biochemistry ,chemistry ,Triterpene ,Complementary DNA ,biology.protein ,Lupeol synthase ,Oleanane - Abstract
Tripterygium regelii is a rich source of triterpenoids, containing many types of triterpenes with high chemical diversity and interesting pharmacological properties. The cDNA of the multifunctional oxidosqualene cyclase (TrOSC, GenBank accession number: MH161182), consisting of a 2289 bp open reading frame and coding for 762 amino acids, was cloned from the stems and roots of Tripterygium regelii. Phylogenetic analysis using OSC genes from other plants suggested that TrOSC might be a mixed-amyrin synthase. The coding sequence was cloned into the expression vector pYES2 and transformed into the yeast Saccharomyces cerevisiae. The resulting products were analysed by GC-MS. Surprisingly, although it showed 76% sequence identity to lupeol synthase from Ricinus communis, TrOSC was found to be a multifunctional triterpene synthase producing both α- and β-amyrin, the precursors of ursane and oleanane type triterpenes, respectively. qRT-PCR analysis revealed that the transcript of TrOSC accumulated mainly in roots and stems. Taken together, our findings contribute to the knowledge of key genes in the pentacyclic triterpene biosynthesis pathway.
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- 2018
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48. Identification and functional characterization of diterpene synthases for triptolide biosynthesis from Tripterygium wilfordii
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Yu-Jia Liu, Wei Gao, Hongyu Guan, Yujun Zhao, Reuben J. Peters, Yuru Tong, Tianyuan Hu, Jian Yang, Jiawei Zhou, Qiqing Cheng, Meimei Xu, Yifeng Zhang, Luqi Huang, Linhui Gao, and Ping Su
- Subjects
0301 basic medicine ,Tripterygium ,Plant Science ,Article ,Terpene ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,Genetics ,Phylogeny ,Plant Proteins ,Abietane ,Alkyl and Aryl Transferases ,Plants, Medicinal ,Natural product ,biology ,Cell Biology ,Phenanthrenes ,Triptolide ,biology.organism_classification ,Biosynthetic Pathways ,030104 developmental biology ,chemistry ,Biochemistry ,Celastrol ,Epoxy Compounds ,RNA Interference ,Tripterygium wilfordii ,Diterpenes ,Diterpene - Abstract
Summary Tripterygium wilfordii, which has long been used as a medicinal plant, exhibits impressive and effective anti-inflammatory, immunosuppressive and anti-tumor activities. The main active ingredients are diterpenoids and triterpenoids, such as triptolide and celastrol, respectively. A major challenge to harnessing these natural products is that they are found in very low amounts in planta. Access has been further limited by the lack of knowledge regarding their underlying biosynthetic pathways, particularly for the abeo-abietane tri-epoxide lactone triptolide. Here suspension cell cultures of T. wilfordii were found to produce triptolide in an inducible fashion, with feeding studies indicating that miltiradiene is the relevant abietane olefin precursor. Subsequently, transcriptome data were used to identify eight putative (di)terpene synthases that were then characterized for their potential involvement in triptolide biosynthesis. This included not only biochemical studies which revealed the expected presence of class II diterpene cyclases that produce the intermediate copalyl diphosphate (CPP), along with the more surprising finding of an atypical class I (di)terpene synthase that acts on CPP to produce the abietane olefin miltiradiene, but also their subcellular localization and, critically, genetic analysis. In particular, RNA interference targeting either both of the CPP synthases, TwTPS7v2 and TwTPS9v2, or the subsequently acting miltiradiene synthase, TwTPS27v2, led to decreased production of triptolide. Importantly, these results then both confirm that miltiradiene is the relevant precursor and the relevance of the identified diterpene synthases, enabling future studies of the biosynthesis of this important bioactive natural product.
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- 2017
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49. An integrated approach to identify critical transcription factors in the protection against hydrogen peroxide-induced oxidative stress by Danhong injection
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Chen Ding, Ye Zhao, Mingwei Liu, Hongjun Yang, Luqi Huang, Shi-Huan Tang, Jingjing Zhang, Junying Wei, Lei Song, Feifei Guo, Ya Geng, and Minghua Xian
- Subjects
0301 basic medicine ,Cardiotonic Agents ,DNA Repair ,DNA repair ,Apoptosis ,Biology ,Response Elements ,medicine.disease_cause ,Biochemistry ,Cell Line ,Transcriptome ,03 medical and health sciences ,Transcription (biology) ,Proto-Oncogene Proteins ,Physiology (medical) ,Gene expression ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,medicine ,Animals ,Gene Regulatory Networks ,Myocytes, Cardiac ,Enhancer ,Transcription factor ,Melatonin ,Homeodomain Proteins ,Genetics ,MEF2 Transcription Factors ,Gene Expression Profiling ,Hydrogen Peroxide ,Microarray Analysis ,Rats ,Cell biology ,Oxidative Stress ,030104 developmental biology ,Proteome ,Oxidative stress ,Drugs, Chinese Herbal ,Protein Binding ,Transcription Factors - Abstract
Oxidative stress plays a vital role in many pathological processes of the cardiovascular diseases. However, the underlying mechanism remains unclear, especially on a transcription factor (TF) level. In this study, a new method, concatenated tandem array of consensus transcription factor response elements (catTFREs), and an Illumina-based RNA-seq technology were integrated to systematically investigate the role of TFs in hydrogen peroxide (H2O2)-induced oxidative stress in cardiomyocytes; the damage was then rescued by Danhong injection (DHI), a Chinese standardized product approved for cardiovascular diseases treatment. The overall gene expression revealed cell apoptosis and DNA repair were vital for cardiomyocytes in resisting oxidative stress. By comprehensively integrating the transcription activity of TFs and their downstream target genes, an important TFs-target network were constructed and 13 TFs were identified as critical TFs in DHI-mediated protection in H2O2-induced oxidative stress. By using the integrated approach, seven TFs of these 13 TFs were also identified in melatonin-mediated protection in H2O2-induced damage. Furthermore, the transcription activity of DNA-(apurinic or apyrimidinic site) lyase (Apex1), Myocyte-specific enhancer factor 2D (Mef2d) and Pre B-cell leukemia transcription factor 3 (Pbx3) was further verified in pluripotent stem cell-derived cardiomyocytes. This research offers a new understanding of cardiomyocytes in response to H2O2-induced oxidative stress and reveals additional potential therapeutic targets. The combination of two parallel omics datasets (corresponding to the transcriptome and proteome) can reduce the noise in high-throughput data and reveal the fundamental changes of the biological process, making it suitable and reliable for investigation of critical targets in many other complicated pathological processes.
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- 2017
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50. Molecular cloning and functional identification of sterol C24-methyltransferase gene from Tripterygium wilfordii
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Wei Gao, Xianan Zhang, Jia Li, Hongyu Guan, Yujun Zhao, Tianyuan Hu, Yuru Tong, Luqi Huang, Yu-Jia Liu, Yifeng Zhang, Ping Su, and Xiaoyi Wu
- Subjects
0106 biological sciences ,0301 basic medicine ,Molecular cloning ,01 natural sciences ,Cycloartenol C24-methyltransferase ,03 medical and health sciences ,chemistry.chemical_compound ,Complementary DNA ,Inducible expression ,Tissue expression ,General Pharmacology, Toxicology and Pharmaceutics ,Methyl jasmonate ,biology ,lcsh:RM1-950 ,Enzymatic assay ,biology.organism_classification ,Molecular biology ,Sterol ,Open reading frame ,030104 developmental biology ,lcsh:Therapeutics. Pharmacology ,Biochemistry ,chemistry ,Methyltransferase Gene ,Cycloartenol ,Tripterygium wilfordii ,010606 plant biology & botany ,Cloning - Abstract
Sterol C24-methyltransferase (SMT) plays multiple important roles in plant growth and development. SMT1, which belongs to the family of transferases and transforms cycloartenol into 24-methylene cycloartenol, is involved in the biosynthesis of 24-methyl sterols. Here, we report the cloning and characterization of a cDNA encoding a sterol C24-methyltransferase from Tripterygium wilfordii ( TwSMT1 ). TwSMT1 (GenBank access number KU885950) is a 1530 bp cDNA with a 1041 bp open reading frame predicted to encode a 346-amino acid, 38.62 kDa protein. The polypeptide encoded by the SMT1 cDNA was expressed and purified as a recombinant protein from Escherichia coli ( E. coli ) and showed SMT activity. The expression of TwSMT1 was highly up-regulated in T. wilfordii cell suspension cultures treated with methyl jasmonate (MeJA). Tissue expression pattern analysis showed higher expression in the phellem layer compared to the other four organs (leaf, stem, xylem and phloem), which is about ten times that of the lowest expression in leaf. The results are meaningful for the study of sterol biosynthesis of T. wilfordii and will further lay the foundations for the research in regulating both the content of other main compounds and growth and development of T. wilfordii.
- Published
- 2017
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