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• Peatland degradation caused a significant loss of testate amoeba (TA) biodiversity. • Unexpectedly, this loss was accompanied by an increase in TA biosilicification. • TA biodiversity was not coupled to protozoic biogeochemical silicon (Si) cycling. • New insights into microbial biogeochemical Si cycling on a continental scale. Anthropogenic peatland degradation is a global threat. As peatlands store large amounts of carbon (C) their potential for mitigation of climate change has been emphasized recently. Global C cycling is linked to silicon (Si) fluxes from the continents into the oceans. These fluxes in turn are driven by biosilicification, the incorporation of inorganic Si into living organisms, in terrestrial ecosystems. Biosilicification by testate amoeba (TA) communities and its potential for Si cycling has been highlighted since the beginning of the 21st century. However, the effects of peatland degradation on TA biodiversity and corresponding protozoic biosilicification on a continental scale remained unresolved so far. We show that TA biodiversity in Asian peatlands is strongly affected by the grade of human impact. This biodiversity decline was accompanied by an unexpected increase in protozoic biosilicification. Our findings provide new insights into the interactions between the biodiversity of soil microorganisms and biogeochemical Si cycling. [ABSTRACT FROM AUTHOR]