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We simultaneously measured bacterial production (BP), bacterial respiration (BR), alkaline phosphatase activity ( phos) and ectoaminopeptidase activity ( prot) in relation to biogeochemical parameters, nutritive resources and in situ temperature over a 1-year survey at the long-term observatory the SOLEMIO station (Marseille bay, NW Mediterranean Sea). Despite its proximity to the coast, oligotrophic conditions prevailed at this station (yearly mean of Chl a = 0.43 μg dm, NO = 0.55 μmol dm and PO = 0.04 μmol dm). Episodic meteorological events (dominant winds, inputs from the Rhone River) induced rapid oscillations (within 15 days) in temperature and sometimes salinity that resulted in rapid changes in phytoplankton succession and a high variability in C/P ratios within the particulate and dissolved organic matter. Throughout the year, BP ranged from 0.01 to 0.82 μg C dm− h− and bacterial growth efficiency varied from 1 to 39 %, with higher values in summer. Enrichment experiments showed that BP was limited most of the year by phosphorus availability (except in winter). A significant positive correlation was found between in situ temperature, BP, BR and phos. Finally, we found that temperature and phosphate availability were the main factors driving heterotrophic bacterial activity and thus play a fundamental role in carbon fluxes within the marine ecosystem. [ABSTRACT FROM AUTHOR]

This paper assesses how considering variation in DOC availability and cell maintenance in bacterial models affects Bacterial Growth Efficiency (BGE) estimations. For this purpose, we conducted two biodegradation experiments simultaneously. In experiment one, a given amount of substrate was added to the culture at the start of the experiment whilst in experiment two, the same amount of substrate was added, but using periodic pulses over the time course of the experiment. Three bacterial models, with different levels of complexity, (the Monod, Marr-Pirt and the dynamic energy budget (DEB) model), were used, and calibrated using the above experiments. BGE has been estimated using the experimental values obtained from discrete samples and from model generated data. Cell maintenance was derived experimentally, from respiration rate measurements. The results showed that the Monod model did not reproduce the experimental data accurately, whereas the Marr-Pirt and DEB models demonstrated a good level of reproducibility, probably because cell maintenance was built into their formula. Whatever estimation method was used, the BGE value was always higher in experiment two (the periodically pulsed substrate) as compared to the initially one-pulsed-substrate experiment. Moreover, BGE values estimated without considering cell maintenance (Monod model and empirical formula) were always smaller than BGE values obtained from models taking cell maintenance into account. Since BGE is commonly estimated using constant experimental systems and ignore maintenance, we conclude that these typical methods underestimate BGE values. On a larger scale, and for biogeochemical cycles, this would lead to the conclusion that, for a given DOC supply rate and a given DOC consumption rate, these BGE estimation methods overestimate the role of bacterioplankton as CO2 producers. [ABSTRACT FROM AUTHOR]

The distribution and bacterial availability of dissolved neutral sugars were studied in the South East Pacific from October to December 2004 during the BIOSOPE cruise. Four contrasted sites were investigated: Marquesas Islands (MAR), the hyper-oligotrophic South Pacific Gyre (GYR), the eastern part of the Gyre (EGY), and the coastal waters associated to upwelling of Chile (UPW). Total (free and combined) dissolved neutral sugar (TDNS) concentrations were higher in UPW (149-329 nM) and MAR (111-540 nM), than in GYR (79-390 nM) and EGY (58-492 nM). Nevertheless, their contribution to dissolved organic carbon (TDNS-C/DOC%) was generally low for all sites varying from 0.5% to 4% indicating that our South East Pacific surface waters were relatively poor in neutral sugars. Free dissolved neutral sugar (FDNS; e.g. sugars analyzed without hydrolysis) concentrations were very low within the detection of our method (5-10 nM) accounting <5% of the TDNS. In general, the predominant sugars within the TDNS pool were glucose, xylose, arabinose, and galactose while in the FDNS pool only glucose was present. TDNS stock to bacterial production ratios (integrated values from the surface to the deep chlorophyll maximum) were relatively high in GYR with respect to the low primary production, whereas the opposite trend was observed in the highly productive area of UPW. Intermediate situations were observed for MAR and EGY. Bioavailability of dissolved organic matter (DOM) exposed to natural solar radiation was also experimentally studied and compared to dark treatments. Our results showed no or little detectable effect of sunlight on DOM bacterial assimilation in UPW and in GYR while a significant stimulation was found in MAR and EGY. The overall results clearly suggest the semi-labile character of DOM in GYR compared to the labile of UPW and are consistent with dissolved organic carbon accumulation and the elevated C/N ratios reported by Raimbault et al. (2007). [ABSTRACT FROM AUTHOR]