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5 results on '"Yamaoka, Shohei"'

1. Deep evolutionary origin of gamete-directed zygote activation by KNOX/BELL transcription factors in green plants.

Author

Hisanaga T, Fujimoto S, Cui Y, Sato K, Sano R, Yamaoka S, Kohchi T, Berger F, and Nakajima K

Subjects
Diploidy, Biological Evolution, Germ Cells physiology, Plants metabolism, Transcription Factors metabolism
Abstract

KNOX and BELL transcription factors regulate distinct steps of diploid development in plants. In the green alga Chlamydomonas reinhardtii, KNOX and BELL proteins are inherited by gametes of the opposite mating types and heterodimerize in zygotes to activate diploid development. By contrast, in land plants such as Physcomitrium patens and Arabidopsis thaliana , KNOX and BELL proteins function in meristem maintenance and organogenesis during the later stages of diploid development. However, whether the contrasting functions of KNOX and BELL were acquired independently in algae and land plants is currently unknown. Here, we show that in the basal land plant species Marchantia polymorpha , gamete-expressed KNOX and BELL are required to initiate zygotic development by promoting nuclear fusion in a manner strikingly similar to that in C. reinhardtii . Our results indicate that zygote activation is the ancestral role of KNOX/BELL transcription factors, which shifted toward meristem maintenance as land plants evolved., Competing Interests: TH, SF, YC, KS, RS, SY, TK, FB, KN none, (© 2021, Hisanaga et al.)

Published
2021
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2. Building new insights in plant gametogenesis from an evolutionary perspective.

Author

Hisanaga T, Yamaoka S, Kawashima T, Higo A, Nakajima K, Araki T, Kohchi T, and Berger F

Subjects
Gene Expression Regulation, Plant, Germ Cells, Plant metabolism, Marchantia genetics, Marchantia growth & development, Plant Proteins genetics, Plant Proteins metabolism, Transcription Factors genetics, Transcription Factors metabolism, Biological Evolution, Gametogenesis, Plant, Germ Cells, Plant growth & development, Marchantia metabolism
Abstract

Extant bryophytes are thought to preserve characteristics of ancestral land plants, with a life cycle dominated by the haploid gametophyte. The gametophyte produces gametes in specialized organs that differentiate after an extensive phase of vegetative development. During land plant evolution, these organs became extremely reduced. As a result, in flowers of angiosperms the haploid phase of the life cycle is reduced to few-celled gametophytes, namely the embryo sac (female) and pollen (male). Although many factors contributing to gametogenesis have been identified in flowering plants, the extreme reduction of the gametophytes has prevented a clear molecular dissection of key processes of gametogenesis. Recent studies in the model bryophyte Marchantia polymorpha have identified conserved transcription factors regulating the equivalent steps in the sexual reproduction of land plants. These include FEMALE GAMETOPHYTE MYB for female gametophyte development, BONOBO for gamete progenitor cell specification, DUO POLLEN1 for sperm differentiation and members of the RWP-RK domain family for female gamete formation. These studies demonstrate that M. polymorpha is a powerful model to untangle the core processes of gametogenesis in land plants. We anticipate that a deeper understanding of gametogenesis in bryophytes will circumscribe the origin of plant germ cells and define the differentiation programmes of sperm and eggs.

Published
2019
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3. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Author

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, and Schmutz J

Subjects
Adaptation, Biological, Embryophyta physiology, Gene Expression Regulation, Plant, Marchantia physiology, Molecular Sequence Annotation, Signal Transduction, Transcription, Genetic, Biological Evolution, Embryophyta genetics, Genome, Plant, Marchantia genetics
Abstract

The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP., (Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.)

Published
2017
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4. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Author

Bowman, John L, Kohchi, Takayuki, Yamato, Katsuyuki T, Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A, Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R, Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M, Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E, Eklund, D Magnus, Florent, Stevie N, Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J, Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N, Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-Ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih-Shun, Lindquist, Erika, Lipzen, Anna M, Lu, Chia-Wei, De Luna, Efraín, Martienssen, Robert A, Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W, Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, and Suzuki, Yutaka

Subjects
Genome, Life on Land, fungi, Marchantia polymorpha, food and beverages, Molecular Sequence Annotation, Plant, Biological Sciences, Biological, Biological Evolution, charophycean algae, Medical and Health Sciences, Genetic, Gene Expression Regulation, Marchantia, Genetics, Embryophyta, land plant evolution, Adaptation, sex chromosome, auxin, Transcription, Signal Transduction, Developmental Biology
Abstract

The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M.polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.

Published
2017

5. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Author

Bowman, John L, Kohchi, Takayuki, Yamato, Katsuyuki T, Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A, Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R, Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M, Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E, Eklund, D Magnus, Florent, Stevie N, Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J, Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N, Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-Ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih-Shun, Lindquist, Erika, Lipzen, Anna M, Lu, Chia-Wei, De Luna, Efraín, Martienssen, Robert A, Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W, Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, Takenaka, Mizuki, Takezawa, Daisuke, Tomogane, Hirokazu, Tsuzuki, Masayuki, Ueda, Takashi, Umeda, Masaaki, Ward, John M, Watanabe, Yuichiro, Yazaki, Kazufumi, Yokoyama, Ryusuke, Yoshitake, Yoshihiro, Yotsui, Izumi, Zachgo, Sabine, and Schmutz, Jeremy

Subjects
Transcription, Genetic, fungi, Marchantia polymorpha, Adaptation, Biological, food and beverages, Molecular Sequence Annotation, 15. Life on land, charophycean algae, Biological Evolution, Gene Expression Regulation, Plant, Marchantia, Embryophyta, land plant evolution, sex chromosome, auxin, Genome, Plant, Signal Transduction
Abstract

The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.

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