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In India, nearly 29% of adults (over 42% of men and 14% of women) aged 15 or above use tobacco daily or occasionally.1 Out of 100 million smokers, nearly 40 million smoke cigarettes. ITC (British American Tobacco’s India affiliate) dominates the Indian-manufactured cigarette market with 77% market share,2 while Godfrey Phillips India (Phillip Morris International’s India affiliate) controls 13% of the market.3 In terms of volume, however, bidi (also beedi, a forest tree leaf hand-rolled indigenous cigarillo using sun-cured flaked tobacco) dominates the smoking landscape. In 2014, it is estimated that nearly 550 billion4 bidis were made by women and children in the poorest parts of India.5 In addition, nearly 200 million adults use smokeless tobacco (SLT).1 SLT is the most widely consumed tobacco product in the country that is homemade, largely unregulated, untaxed and sold locally. About 30% of the SLT market consists of commercially manufactured products, where Dharampal Satyapal Group (DS Group) enjoys a large market share.6 Historically, the Indian tobacco industry has spent large sums in aggressively marketing and advertising its products.7 With the coming into force of the Cigarettes and Other Tobacco Products Act, 2003 (COTPA), however, all forms of direct and indirect tobacco advertising were prohibited in India.8 In particular, section 5, clause 3, subclause (b) of COTPA prescribed that: > No person, shall, under a contract or otherwise promote or agree to promote the use or consumption of…(b) any trade mark or brand name of cigarettes or any other tobacco product in exchange for a sponsorship, gift, prize or scholarship given or agreed to be given by another person.8 Article 13 of the WHO Framework Convention on Tobacco Control (WHO FCTC)9 considers corporate social responsibility (CSR) activities to be a form of tobacco advertising …

Background Indian Premier League (IPL) cricket tournament - a shorter version of the sport which is played between assorted company-owned or individual owner teams - has grown immensely popular over the last decade. There is long history of tobacco advertisement, promotion and sponsorship (TAPS) in cricket. While direct and indirect TAPS is completely prohibited under the Cigarettes and Other Tobacco Products Act (COTPA), 2003 the nexus between tobacco industry and cricket in India continues. We monitored any tobacco product and allied brand or surrogate advertisement, promotion, sponsorship (TAPS) or placement during every match played in the IPL-13 season in the year 2020. Methods Using an investigative approach, 60 match highlights during IPL-13 (during September 19 to November 10, 2020) were monitored for TAPS (both on-site i.e. sportswear and/or in stadia) shown on the official website ( www.iplt20.com ). All sponsors and advertisers were validated using brand names or logos from their respective official website. Results Two IPL teams (Rajasthan Royals and Royal Challengers Bangalore) were sponsored by major tobacco industry owned brands. Violations by a major smokeless tobacco company promoting their brand extension product i.e. Vimal Elaichi, on the official telecast websites ( www.espncricinfo.com and www.cricbuzz.com ) and television channels ( www.Zeenews.india.com/Gujarati ) was observed. Tobacco companies i.e. Kamla Pasand and ITC Limited were also listed as associate sponsors for the 2020 championship. Conclusion Despite comprehensive ban under India's tobacco control law (COTPA, 2003), sponsorship by tobacco industry was found widespread in IPL-13. Advertisement and logos of tobacco companies are persistent during the telecast and promotion of the IPL events, in clear violation of India's tobacco control legislation and Article 13 of WHO's Framework Convention on Tobacco Control (WHO-FCTC) and its guidelines. Given that India and South Asia comprise the largest audience for televised cricket, strong exclusion criteria is needed by the international cricket authority and national cricket associations to ensure compliance with the national law and global good practice, making the cricketing world truly tobacco free.

A novel e-waste-degrading strain, PE08T, was isolated from contaminated soil collected from a paper mill yard in Lalkuan, Uttarakhand, India. Strain PE08T was Gram-stain-negative, rod-shaped, aerobic, oxidase-positive and catalase-positive. Optimum growth was observed at 30 °C (range, 5–40 °C), with 1–2 % NaCl (range, 0–3 %) and at pH 7 (range 6–11). The phylogeny based on 16S rRNA gene sequences delineated strain PE08T to the genus Pseudomonas and showed highest sequence similarity to Pseudomonas furukawaii KF707T (98.70 %), followed by Pseudomonas aeruginosa DSM 50071T (98.62 %) and Pseudomonas resinovorans DSM 21078T (97.93 %). The genome of strain PE08T was sequenced and had one scaffold of 6056953 bp, 99.84 % completeness and 182× coverage were obtained. The G+C content in the genome was 64.24 mol%. The DNA–DNA hybridization and average nucleotide identity values between strain PE08T and its closely related type strain, P. resinovorans DSM 21078T were below 34.8 % and 87.96 %, respectively. The phylogenetic analysis based on whole-genome sequence and concatenated GyrB and RpoB proteins revealed that strain PE08T forms a district clade in the family Pseudomonadaceae . The predominant fatty acids were summed feature 8 (C18 : 1ω7c and/or C18 :1 ω6c), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16 : 0 and C12 : 0. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The phenotypic, chemotaxonomic and genetic analysis, including overall genome relatedness index values, indicated that strain PE08T represents a novel species of the genus Pseudomonas , for which the name Pseudomonas lalkuanensis sp. nov. is proposed. The type strain is PE08T (=MCC 3792=KCTC 72454=CCUG 73691).

Cereals are a rich source of vitamins, minerals, carbohydrates, fats, oils and protein, making them the world’s most important source of nutrition. The influence of rising global population, as well as the emergence and spread of disease, has the major impact on cereal production. To meet the demand, there is a pressing need to increase cereal production. Optimal seed development is a key agronomical trait that contributes to crop yield. The seed development and maturation is a complex process that includes not only embryo and endosperm development, but also accompanied by huge physiological, biochemical, metabolic, molecular and transcriptional changes. This chapter discusses the growth of cereal seed and highlights the novel biological insights, with a focus on transgenic and new molecular breeding, as well as biotechnological intervention strategies that have improved crop yield in two major cereal crops, primarily wheat and rice, over the last 21 years (2000–2021).

We performed whole-genome sequencing of two phytoplasmas associated with sugarcane grassy shoot (SCGS) and Bermuda grass white leaf diseases. These are the first draft genomes of SCGS phytoplasma (strain SCGS) and ‘Candidatus Phytoplasma cynodontis’ (strain LW01) and may help to delineate these phytoplasmas at a finer taxonomic level.

Red kidney bean (RKB) is an important cash crop of the Western Indian Himlayan (WIH) regions. Despite of having a long cultivation history, very little has known about its rhizospheric microbial diversity, which is becoming important for employing sustainable agricultural plans. In this perspective, the bacterial diversity and community structure of Himalayan RKB rhizosphere were studied and compared across the altitudinal zones of WIH. Metagenomic analysis revealed that Proteobacteria (31%) was the major phylum with the dominance of the genera Sphingomonas in the Garhwal while Pseudomonas in the Kumaun regions of Western Indian Himalaya (WIH), followed by Bacteroidetes (20%), Fermicutes (9%), Acidobacteria (7%), Actinobacteria (6%), Chloroflexi (5%), Gemmatimonadetes (3%) and Planctomyces (2%). Furthermore, the Garhwal soil was found to harbor more bacterial diversity than the Kumaun with unique genera Conexibacter, Ornithobacterium, Lacibacter, Salinibacter, Fervidicola, Haliangium, Pirellula, Caloramator, Desulfitobacterium, Edaphobacter, Holophaga and Massilia. The principal component analysis revealed that the bacterial diversity was associated with the content of “total solids” as well as “volatile acids” present in the respective soils. Additionally, large number of unclassified clone sequences suggesting the need of culture dependent studies to trap “yet not cultivated” bacterial species. Conclusively, the present study provides an overview of RKB associated bacterial diversity which must be explored for sustainable hill agricultural plans.

Background: Blackgram (Vigna mungo L.) is an important pulse crop occupying a unique position in Indian agriculture and it stands fourth in area and production among the pulses. The popularity of this pulse is due to its nutritional and industrial values. Blackgram crop is attacked by a number of insect pests from sowing to harvest in the field as well as in storage condition. Among these insects-pests pod borers i.e. spotted pod borer, Maruca vitrata (Geyer) and gram pod borer, Helicoverpa armigera (Hubner) are serious insect-pests of black gram causing seed and pod damage. Therefore, keeping these views in mind, the present study was conducted. Methods: Present investigations were carried out during Kharif season of 2018 and 2019 to identify the resistant cultivars that are less susceptible to spotted pod borer and gram pod borer in black gram. Result: Fifteen black gram genotypes were screened against pod borers i.e. M. vitrata and H. armigera. When the data of both years were pooled, the two genotypes viz., KU-99-05 and Azad Urd-1 were found with minimum pod infestation of 7.67 and 9.67 per cent, respectively and categorized as resistant (R) against M. vitrata. The four genotypes KU-99-05, Azad Urd-1, Shekhar-2 and PU-6 were classified as resistant (R) against H. armigera with minimum pod infestation of 5.83, 6.17, 8.50 and 9.83 per cent, respectively during both the consecutive seasons (Kharif, 2018 and 2019).

Leucas aspera (Wild.) Linn. (Family: Lamiaceae) is a commonly found weed throughout India, known for its pharmacological properties. Its white flowers and leaves are used in many Ayurvedic formulations for the treatment of chronic rheumatism, psoriasis, snake bites and skin eruptions (Prajapathi et al., 2010). During a survey of commercial flower crop fields in May 2018, a few L. aspera plants, growing as unwanted weeds in the fields and surrounding agricultural wastelands with the symptoms of phyllody, virescence and little leaves were observed in Emmekoppalu (12.2106, 76.2511; n= 1/26 plants) and Beerihundi (12.1630, 76.3225; n= 2/59 plants) localities of Mysuru district, and Srirangapatna in Mandya district (12.2541, 76.411; 1/67 plants), Karnataka- India(Figure 1). 'n' denotes the symptomatic/ asymptomatic samples observed. The disease incidence in the surveyed localities ranged less than four per cent. The total genomic DNA was extracted from the leaf midrib tissues of three representative symptomatic and two asymptomatic samples using the CTAB method. The phytoplasma 16S rRNA gene was amplified in nested PCR assay by P1/P7 followed by R16F2n/R16R2 primers using Long Amplification (LA) Taq polymerase (Takara, Japan). Additionally, the PCR assays were performed for the amplification of phytoplasma secA gene using the primers SecAfor1/SecArev3 and SecAfor2/SecArev3 (Hodgetts et al., 2008). The DNA templates from all the symptomatic samples generated amplicons of approximately 1.25kb (16S rRNA gene) and 480 bp (secA gene) revealing the association of phytoplasma strains. No amplifications were observed for the asymptomatic L. aspera samples. The obtained 16S rRNA gene sequences (MN223676, MT807111 and MZ093053) showed 97.96, 98.37 and 98.18 % sequence identity, respectively; with the 'Candidatus Phytoplasma aurantifolia', strain 'WBDL (U15442) using EzBiocloud database. The NCBI-BLAST analysis revealed maximum identity to various Peanut witches' Broom (PWB) phytoplasma strains. The virtual RFLP tool, iPhyClassifier delineated the Leucas phyllody phytoplasma strains (MN223676, MT807111 and MZ093053) to group 16SrII (PWB, Peanut Witches' broom group) subgroup D with the similarity coefficient 1.0 (Zhao et al. 2009). The obtained secA gene sequences (MZ151944, MZ151945 and MZ151946) were 98.15 to 100 % similar to the strain sequences of PWB phytoplasma strains. Further, the clustering pattern in the phylogenetic trees (16S rRNA and secA genes) constructed using MEGA 7 confirmed that the Leucas phyllody phytoplasma sequences were closely related to PWB strains. To the best of our knowledge, this is the first report on the association of 16SrII-D subgroup phytoplasma with the phyllody disease of L. aspera. In India, many weeds and wild plants serve as alternative hosts of PWB phytoplasmas and aid in the emergence of related diseases in economically important crops (Thorat et al., 2016; Thorat et al., 2017). The close genetic association of phytoplasma strains found in L. aspera and many other crops indicates the presence of common insect vector(s) transmitting these phytoplasmas (Yadav et al. 2015). This report is an addition to the catalogue of the weed species harboring phytoplasma strains associated with economically important crop plants (Rao et al., 2017). The screening of phytoplasma strains in weeds, alternate hosts and known/ unknown insect vectors is therefore essential to develop management strategies and effective management of phytophagous insect vectors feeding on both weeds and crop plants.

Two aerobic, Gram-stain variable, catalase and oxidase-positive, spore-forming, motile rods of strain UniB2T and UniB3T, were isolated from digestive syrup containing fungal diastase (10 mg/ml), pepsin (2 mg/ml) and sugar base containing polyethene glycol. Based on 16S rRNA gene sequence analysis, strain UniB2T has the highest sequence similarity with Paenibacillus humicus NBRC 102415T (98.30 %) and strain UniB3T showed the highest sequence similarity with Niallia circulans DSM 11T (98.95 %). The DNA G+C content of UniB2T was 63.74 mol %. The dDDH and ANI values between the strain UniB2T and its phylogenetically close relative were T were C16:00 (13.9 %), C15:0 anteiso (39.7 %), C17:0 anteiso (15.5 %). The DNA G+C content of UniB3T was 35.6 mol%. The dDDH and ANI values between the strain UniB3T and its close relatives were T were C16:0 (13.54 %), C15:0 anteiso (40.09 %) and C17:0 anteiso (16.03 %). Major polar lipids for both strains were Diphosphotidylglycerol and Phosphatidylethanolamine. Additionally, both the strains showed unique carbon utilization and assimilation pattern that differentiated them from their phylogenetically related neighbours. These phenotypic, genotypic and chemotaxonomic characters indicated the strains UniB2T and UniB3T represent two novel species for which the names Paenibacillus albicerus sp. nov. (Type strain UniB2T =MCC 3997T =KCTC 43095T =JCM34513T) and Niallia alba sp. nov. (Type strain UniB3T = MCC 3998T =KCTC 43235T =JCM 34492T) are proposed.

ObjectiveAreca nut is one of the most widely consumed substances globally, after nicotine, ethanol and caffeine and classified as carcinogenic to humans. This study examines the disparity and determinants of areca nut consumption with and without tobacco in India.DesignNationally representative cross-sectional study.ParticipantsWe used the nationally representative Global Adult Tobacco Survey 2016–2017. The analytical sample size was 74 037 individual’s aged 15 years and above with a response rate of 92.9%.MeasuresCurrent consumption of areca nut without tobacco and with tobacco.MethodWe examined determinants of areca nut consumption (without tobacco and with tobacco) using multinomial logistic regression, accounting for the survey design.ResultsAbout 23.9% (95% CI 23.1 to 24.8) of the adult population consume areca nut, that is, approximately 223.79 million people in India; majority of users (14.2%–95% CI 13.5 to 14.9) consumed areca nut with tobacco. When compared with women, men were more likely to consume areca nut (with tobacco relative risk (RR)=2.02; 95% CI 1.85 to 2.21 and without tobacco RR=1.13; 95% CI 1.07 to 1.20). Age, marital status, education, occupation, caste, religion and region were significantly associated with areca nut consumption. However, the direction and magnitude of association differ with respect to the areca nut consumption with and without tobacco.ConclusionThe ongoing tobacco control efforts would not address the majority of areca nut users until greater attention to areca nut consumption with and without tobacco is reflected in health policies in India.

Background: Pigeonpea [Cajanus cajan (L.) Millsp.] is an important legume crop from the Family Fabaceae. Pigeonpea commonly known as ‘Arhar’ or ‘Tim’ is mainly consumed in the form of split pulse as ‘dal’. Pigeonpea is cultivated as an annual or semi-perennial crop, usually in mixed cropping systems. Pigeonpea is attacked by insect-pests right from sowing to harvesting and also during the storage. Gram pod borer, H. armigera has been a major pest in most parts of the country. Therefore, keeping these views in mind, the present study was conducted.Methods: Present investigations were carried out during Kharif season of 2013 and 2014 to evaluate some insecticides and biopesticides against Helicoverpa armigera in various modules on short duration pigeonpea.Result: The mean larval population of H. armigera after spray was minimum in M3 (1.15 larvae plant-1) followed by M2 (1.17 larvae plant-1) and maximum in module M5 (1.61 larvae plant-1) during Khaif 2013. During Khaif 2014 mean larval population of H. armigera after spray was minimum in M2 (1.11 larvae plant-1) followed by M3 (1.12 larvae plant-1) and maximum in module M5 (1.58 larvae plant-1). Hence these modules (M2 and M3) can be adopted by the farmers for effective and economic management of H. armigera.

Polyhouses are utilized in an incredible degree to cover present-day society’s fresh food needs, and the assortment, quality, and quantity of items are critical variable factors responsible for the popularization of polyhouses. A modern set of polyhouse provides ideal conditions for plant development concerning the external climate conditions. For this reason, heating measurement gadgets like a thermometer, humidity, and CO2 controllers are utilized. A polyhouse of 460 m3 volume installed for experimental purposes in DEI, Agra. The heating load during December 2019 is determined to develop the ideal condition within the polyhouse for the optimum growth of the plant. The heating load is of fluctuating nature during the observed period that develops the need to load fluctuating the control devices for smother operation the system. Warming load is analyzed on an hourly base for one month, corresponding to sun based radiation, encompassing air temperature and humidity to have a, however, much as could be possible closer to reality information on load fluctuation. In that manner, amassed results are keeping away from, which on account of the day by day, count base would conceal the concurrence of warming and cooling needs around the same time.

Sugarcane Grassy Shoot (SCGS) disease is known to be related to Rice Yellow Dwarf (RYD) phytoplasmas (16SrXI-B group) which are found predominantly in sugarcane growing areas of the Indian subcontinent and South-East Asia. The 16S rRNA gene sequences of SCGS phytoplasma strains belonging to the 16SrXI-B group share 98.07 % similarity with ‘Ca. Phytoplasma cynodontis’ strain BGWL-C1 followed by 97.65 % similarity with ‘Ca. P. oryzae’ strain RYD-J. Being placed distinctly away from both the phylogenetically related species, the taxonomic identity of SCGS phytoplasma is unclear and confusing. We attempted to resolve the phylogenetic positions of SCGS phytoplasma based on the phylogenetic analysis of 16S rRNA gene (>1500 bp), nine housekeeping genes (>3500 aa), core genome phylogeny (>10 000 aa) and OGRI values. The draft genome sequences of SCGS phytoplasma (strain SCGS) and Bermuda Grass White leaf (BGWL) phytoplasma (strain LW01), closely related to ‘Ca. P. cynodontis’, were obtained. The SCGS genome was comprised of 29 scaffolds corresponding to 505 173 bp while LW01 assembly contained 21 scaffolds corresponding to 483 935 bp with the fold coverages over 330× and completeness over 90 % for both the genomes. The G+C content of SCGS was 19.86 % while that of LW01 was 20.46 %. The orthoANI values for the strain SCGS against strains LW01 was 79.42 %, and dDDH values were 22. Overall analysis reveals that SCGS phytoplasma forms a distant clade in RYD group of phytoplasmas. Based on phylogenetic analyses and OGRI values obtained from the genome sequences, a novel taxon ‘Candidatus Phytoplasma sacchari’ is proposed.

The management of electronic waste (e-waste) becomes a global issue in this digital era. Existing conventional practices are harmful for dealing with the e-waste, therefore, indigenous soil bacteria were explored for e-waste treatment through enrichment culture approach followed by screening, identification and their bioformulation used for in situ investigation. Soil bacteria were enriched in the presence of e-waste after 30 days of incubation under standard laboratory conditions. This finding was established through λmax values that were higher in the case of soil enrichment than the control. The biodegradation of e-waste by the selected strains during enrichment and in situ experiment was confirmed by FTIR, TG-DTG-DTA and SEM analysis. The FTIR spectra evidently support that microbial communities present in the enriched soil has affected the C-chain and used as carbon source for their growth. This chemical structural degradation of e-waste was further substantiated by thermal and SEM analysis. Thermograms experimentally show that the decomposition of the treated samples achieved comparatively at very low temperature than the control sample, while SEM micrographs revealed the surface morphology with distinct disintegrations. These result authenticated the biodegradation process carried out by the soil bacteria. Furthermore, bacterial community analysis confirmed that the used strains were persisting in the experimental pits throughout the trial period. Thus, this study besides providing direct and standardized protocol for screening and selection of efficient e-waste utilizing bacteria is also demonstrating potential consortia which are ready to be used.

tudies were conducted at Instructional farm, College of Agriculture, SKRAU, Bikaner during rabi, 2016-17. Among the nine insecticides/botanicals evaluated against O. phaseoli, the treatment of cartap-hydrochloride was found the most effective followed by phorate 10, acephate, oxydemeton–methyl, quinalphos and dimethoate whereas, NSKE was found the least effective followed by neem oil (0.5%) and azadirachtin (5.0 ml/ltr). The maximum seed yield was obtained in the treatment of cartap-hydrochloride whereas, it was minimum in control. The maximum incremental benefit-cost ratio was obtained in the treatment of acephate (33.22) while, minimum in NSKE. The maximum net return of RS. 25846 ha-1 was obtained from the treatment of cartap-hydrochloride while, the minimum net return of Rs. 3856 ha-1 was obtained from NSKE.

Present investigations were carried out during Kharif season of 2013-14 and 2014-15 at the Agricultural Research Farm, Banaras Hindu University, Varanasi to monitor the population of Helicoverpa armigera (Hubner) by using pheromone traps and to start appropriate control measures in time. The maximum numbers of moth catches were recorded during 44th (16.8 pheromone trap-1) and 45th (19.5 pheromone trap-1) standard week in all the modules during Kharif 2013 and 2014. Relationship between pheromone trap catches and egg population was found significant and positively correlated in all modules except M3 during 2013. In the succeeding year 2014, the correlation between pheromone trap catches and egg population was positive and significant only in case of M5. The correlation between pheromone trap catches and larval population was positive in all modules but significant in case of M1 during 2013. In the succeeding year 2014, the correlation between pheromone trap catches and larval population was positive in all modules but significant only in M5.

Symptoms of excessive shoot proliferation were observed in the Njallani cultivar of small cardamom accompanied by stunting of stalks with fewer degenerated capsules at Nedumkandam Panchayat of Idukki district of Kerala in 2017. Five symptomatic Elettaria cardamomum shoot proliferation (ECSP) plant samples were collected and processed for DNA extraction and PCR assays utilizing universal phytoplasma 16S ribosomal-specific primers pair, P1/P7 followed by R16F2n/R16R2. Sequence comparison analysis of the R16F2n/R16R2 region of 16SrRNA gene showed 100% sequence identity with the ‘Candidatus Phytoplasma australasia’- related strain. Phylogeny and virtual RFLP analyses of 16S rRNA gene sequences confirmed the association of ‘Ca. P. australasia’ strain subgroup D with ECSP disease. The association of 16SrII group was further established and validated by amplifying phytoplasma-specific multilocus candidate genes by utilizing specific primers of secA, secY, SAP11, and tuf genes. The multilocus gene sequence comparison analysis again confirmed the association of ‘Ca. P. australasia’ with the ECSP phytoplasma isolate. This is the first report of phytoplasma association with small cardamom. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s13205-019-1944-9) contains supplementary material, which is available to authorized users.

Bacterial strains with poly-3-hydroxybutyrate (PHB) degradation potential were isolated from waste yard soil samples of selected industrial sites in Uttarakhand, India, and two microbial consortia were developed, i.e. Consortium I comprises Pseudomonas sp. strain Rb10, Pseudomonas sp. strain Rb11 and Bacillus sp. strain Rb18, and Consortium II is composed of Lysinibacillus sp. strain Rb1, Pseudomonas sp. strain Rb13 and Pseudomonas sp. strain Rb19. The current study involved enrichment selection via liquid and semi-solid media, followed by isolation and screening of bacterial strains using PHB pellets and films. Furthermore, the identification and characterisation was done by triphasic approach. The utilisation of PHB by the characterised strains was confirmed by Fourier transform infrared spectroscopy and scanning electron microscopy. Moreover, the minimum inhibitory concentration of solubilised PHB was found to be 2.5 mg/mL, which was detected through ‘clear zone assay’. Further, the selection a...

Weeds and wild plants as hosts of phytoplasmas play an important role in the epidemiology and emergence of phytoplasma diseases of economically important crops. In this chapter phytoplasmas detected in weeds and wild plants, their geographic origins, symptoms, identification, and their role in natural dissemination of phytoplasmas are described.

Phytoplasmas are associated with diseases in several hundred plant species, including many economically important industrial crops like sugarcane, sugar beet, cassava, and cotton. A number of phytoplasma diseases are associated with sugarcane. Originally restricted to Asian countries, they are spreading rapidly to newer locations with the help of infected seed material and leafhopper vectors. In cassava, the two phytoplasma diseases causing serious yield losses are cassava frog skin in Latin America and cassava witches’ broom in Asia. Because of unreliable and nonspecific symptoms, the identification and characterization of the phytoplasmas associated with these and other industrial crops at an early stage of plant growth are challenging. Here the progress made in understanding biology, economic importance, symptomatology, diagnosis, epidemiology, and control of phytoplasmas infecting sugarcane, sugar beet, cassava, and cotton crops are summarized.

Agriculture is an important livelihood activity in the Himalayan regions. Our previous studies revealed the presence of diverse diazotrophic assemblage in indigenous red kidney bean (RKB) rhizospheric soil from two different locations of Western Indian Himalaya, namely S1 (Chhiplakot, 30.70° N/80.30° E) and S2 (Munsyari, 30.60° N/80.20° E), selected on the basis of real-time PCR analysis. In this study, two 16S rRNA gene clone libraries (SB1 and SB2, respectively) were constructed using the same rhizospheric soil samples for assessing the total bacterial diversity and their community structure. A total of 760 clones were obtained, with ≈54–59% of these sequences belonging to the phylum Proteobacteria. While sequences belonging to Bacteroidetes, Chloroflexi, Acidobactria, Planctomycetes, Firmicutes, Nitrospira, Gemmatimonadetes, Cyanobacteria, Verrucomicrobia, OD1, OP11 and Actinobacteria were encountered in both the soils, sequences belonging to bacteria from the classes Chlorobi and BRC1 were only detected in the S1 soil. Both the libraries showed similar bacterial community compositions, with Pseudomonas (≈33–34%) as predominant genus. Phylogenetic analysis revealed that all the clone sequences were clustered in different bacterial groups as per their resemblance with their respective phylogenetic neighbours. Major clusters were formed by Gammapreoteobacteria followed by Bacteroidetes and Alphapro-teobacteria. A good fraction of the clone sequences has no resemblance with existing groups, thereby suggesting the need of culture-dependent studies from Himalayan regions. To the best of our knowledge, this study is the first major metagenomic effort on Himalayan RKBs rhizobacteria revealing fundamental information that needs to be explored for functional studies.

Symptoms of stunting (shortening of internodes), twisting and flat stem (the fasciation of a stem), discoloration of petals, deformed flowers, and witches' broom were recorded on an ornamental plant, plumed cockscomb (Celosia argentea L., fam: Amaranthaceae). The survey conducted at Indian Agricultural Research Institute (IARI) campus, New Delhi and Karnal region, Haryana, India, during September 2014 to March 2015 revealed disease incidence of 40 and 10%, respectively. The 16S rRNA gene sequence comparison and phylogenetic relationships of Celosia phytoplasma strains under study confirmed that they were associated with two different phytoplasma groups ('Candidatus Phytoplasma australasia' and 'Ca. P. asteris'). Virtual RFLP analysis of 16S rRNA gene sequences allowed further classification of the Celosia phytoplasma strains into the 16SrI-B and 16SrII-D subgroups. Notably, the detection of 'Ca. P. asteris' phytoplasma was reported in seeds of C. argentea by nested PCR assays; however, no evidence of phytoplasma presence was detected in seedlings raised from these seeds. This observation is the first record of the association of 16SrI-B and 16SrII-D subgroups of phytoplasmas with flat stem and witches' broom disease of C. argentea anywhere from the world.

Leaf yellows and declining symptoms were observed on garlic and onion plants at Pune and Nasik region of Maharashtra, and Gorakhpur region of Uttar Pradesh in March-April 2016. The disease incidence varied from 12% to 30% in different surveyed regions. After nucleic acid extraction and nested PCR analysis using phytoplasma specific primer pairs (P1/P7 followed by 3F/3R) of a 16S ribosomal gene an expected DNA fragments of 1.3 kb were amplified in two symptomatic onion samples (from Gorakhpur and Narayangaon) and one symptomatic garlic sample (from Pune). Pair wise sequence comparison of 16S rRNA gene of the onion leaf yellows phytoplasma (GKP strain) showed 100% sequence identity with a strain of phytoplasma associated with sugarcane grassy shoot disease (KP746932) and 99% sequence identity with phytoplasma strain associated with Jasminum sambac little leaf disease (KF728950) and Ca. P. oryzae (AB052873) belonging to rice yellow dwarf (16SrXI) group. However, another strain of onion leaf yellows phytoplasma (Narayangaon strain) and garlic leaf yellows and declining phytoplasma (Pune strain) showed 99% sequence identity with phytoplasma strains of grapevine yellows (KX011516), eggplant big bud (JX464672) and sesame phyllody (JX464672) belonging to Ca. P. phoenicium (16SrIX) group. Phylogenetic analysis of 16Sr RNA gene sequences of phytoplasma strains from onion and garlic in the present study confirmed their close relationships with phytoplasma strains of 16SrXI and 16SrIX groups. This is the first report of association of 16SrXI and -IX groups of phytoplasma causing leaf yellows and declining disease of onion and garlic in India.

Cashew nut (Anacardium occidentale L.), an evergreen perennial tree, is an economically important cash crop extensively used in many Indian desserts and cuisines. Cashew nuts are used for their nutritional value and are a major source of protein, fats, vitamins, oleic acid, and palmitic acid. Cashew nut cultivation is undertaken in 17 states of India covering an area of 1.04 Mha. India is the second-largest cashew nut producer in the world, producing about 817,000 MT of raw cashew nuts per annum (https://cashew.icar.gov.in). During a survey in June 2018 of cashew nut orchards in Nagicherra (latitude N 23° 48′ 37.6″; longitude E 91° 19′ 29.7″), West Tripura, India, cashew nut plants were found exhibiting deformed nuts and inflorescence decline (CaID) with prevalence of 5.6% (in a 1-ha area), which were suggestive of phytoplasma infection. Three symptomatic and asymptomatic cashew nut samples were collected, and DNA was extracted from tender shoots using CTAB. To detect the association of phytoplasma with symptomatic cashew nut samples, the isolated genomic DNA samples were assayed for amplification of 16S rRNA region using phytoplasma-specific primer pairs, namely, P1/P7 followed by nested PCR primers R16F2n/R16R2. The 16S rRNA gene of phytoplasma was detected in all collected symptomatic CaID samples, but no amplification was observed in asymptomatic samples. The obtained nested PCR fragments of ∼1.25 kb were sequenced directly (MK076296, MK729150) which showed 99.8% sequence identity with ‘Candidatus Phytoplasma australasia’, strain ‘Carica papaya’ (Y10097). The virtual restriction fragment length polymorphism analysis of 16S rRNA gene sequences delineated the CaID strain to 16SrII-D subgroup with a similarity coefficient of 1.0 using iPhyClassifier. The association of CaID phytoplasma strain with symptomatic cashew nut samples was further established by amplifying phytoplasma-specific partial secA gene (Hodgetts et al. 2008) and tuf gene (Al-Subhi et al. 2018). The phylogenetic analysis of the obtained sequences of 16S rRNA, secA (MK726365, MK726366), and tuf (MK726367, MK726368) genes confirmed the close association of CaID phytoplasma isolates with ‘Ca. P. australasia’ 16SrII-D subgroup member strains. To the best of our knowledge, this is the first report of the association of ‘Ca. P. australasia’ (16SrII-D) with inflorescence decline symptoms of cashew nut in the world. This is significant because phytoplasma strains of 16SrII-C and D have widespread host range including several fruit trees all across India (Rao et al. 2017). These strains are also known to be associated with diseases in weeds, acting as alternate hosts, spreading phytoplasmas through polyphagous insect vectors (Thorat et al. 2016). Likewise, the cashew plants are intercropped in coconut plantations and with plants like maize, groundnut, cowpea, millets, pineapple, and cassava, which are known to be susceptible to phytoplasma-related diseases, posing a threat to cashew nut plantations (Rao et al. 2017; Visalakshi et al. 2015).

Present study done during kharif 2013–14 and 2014–15 at the Agricultural Research Farm, Banaras Hindu University, Varanasi evaluates the egg and larval population of Helicoverpa armigera in pigeonpea, as influenced by selected IPM modules. The least egg population was observed with the module M2 (pheromone traps @ 20 + bird perches @ 20 + Bacillus thuringiensis subsp. kurstaki @ 1.0 kg + spinosad 45SC @ 73 g/ha. As regards larval population, the module M4 (pheromone traps @ 20 + bird perches @ 20 + indoxacarb 14.5 SC @ 60 g a.i. + imidacloprid 17.8 SL @ 20 g a.i. + indoxacarb 14.5 SC @ 60 g a.i./ha) was the one with least numbers. The relationship between egg and larval counts was positive and highly significant in all modules during both the years.

During kharif 2013–14 and 2014–15 at the Agricultural Research Farm, Banaras Hindu University, Varanasi, the damage by major pod infesting pests of pigeonpea was assessed, and the cost benefit ratio of IPM modules worked out. The IPM module M4 consisting sequential sprays of indoxacarb+ imidacloprid+ indoxacarb was observed to be the best (cost benefit ratio being 1:3.72 in 2013–14 and 1:3.96 in 2014–15. The next best module was the M3 with sequential sprays of HaNPV + indoxacarb + HaNPV.

The forest of Southern India, especially in the states of Karnataka, Tamil Nadu and Kerala are recognised for natural populations of sandalwood contributing 90% of its distribution in India. The sandal spike disease (SSD) of sandalwood is known to be associated with the presence of aster yellows (‘Candidatus Phytoplasma asteris’, 16SrI-B). The recent survey and collection of the symptomatic sandalwood samples from the Marayoor sandalwood reserve of Kerala state confirmed the presence of this phytoplasma; however, also 16SrXI-B phytoplasmas were identified. These phytoplasmas were present in single or in mixed infection in the collected sandalwood, sugarcane and Indian gooseberry samples from this area. This study is the first report of 16SrXI-B phytoplasmas in sugarcane in Kerala of witches’ broom disease in Indian gooseberry associated with aster yellows phytoplasmas and the first report of 16SrXI-B phytoplasma presence in SSD plants. These findings unveil serious threat to existing sandalwood and sugarcane cultivation in the Marayoor sandalwood reserve area, and demand a thorough investigation on phytoplasma insect vectors to efficiently manage these diseases associated with phytoplasmas.

Marigold plants with suspected symptoms of phytoplasma infection were collected during field surveys from three different districts of Karnataka where the incidence of these symptoms was ranging from 1 to 11%. The presence of phytoplasmas in the samples showing phyllody and virescence symptoms was confirmed by nested PCR assays using P1/P7 and R16F2n/R16R2 phytoplasma specific primer pairs. The nucleotide sequence identity and phylogenetic analyses of the 16S rRNA gene sequence indicated the presence of a ‘Candidatus Phytoplasma australasia’ -related strain in the diseased marigold samples. The phylogenetic analysis of secA gene sequences of this phytoplasma strain showed its clustering with strains enclosed in the 16SrII-D subgroup, confirming the phytoplasma identification. To the best of our knowledge, this constitutes the first report of 16SrII phytoplasmas associated with marigold phyllody from the Karnataka state. As the most widely cultivated commercial flower of Karnataka, marigold has a significant role in the national and international flower trade. Phyllody and associated symptoms have a direct negative impact on the quality and market value of these flowers.

Red kidney beans (RKBs) are one of the major components in the human diet of Western Indian Himalaya (WIH). Their cultivation in these habitats is strongly influenced by various biotic and abiotic stresses and therefore, there must be a selection of RKB associated microorganisms that are adapted to these harsh conditions. Seven cold adaptive diazotrophs from the same rhizosphere were isolated in our previous study to reveal the low-temperature associated proteins and mechanisms. However, the diversity and phylogenetic affiliations of these rhizosphere diazotrophs are still unknown. In this study, RKB rhizospheric soil from two different agro-ecosystems of WIH namely S1 (Chhiplakot, 30.70°N/80.30°E) and S2 (Munsyari, 30.60°N/80.20°E) were explored for the assessment of nitrogenase reductase gene (nifH) diversity by plating respective clone libraries SN1 and SN2. The RKB rhizosphere diazotroph assemblage was very diverse and apparently consists mainly of the genera Rhizobium, followed by unknown diazotrophic microorganisms. Deduced amino acid sequence analysis revealed the presence of diverse nifH sequences, affiliated with a wide range of taxa, encompassing members of the Proteobacteria, Actinobacteria and Firmicutes. Members of cyanobacteria, methanotrophs and archaea were also detected. To the best of our knowledge, this is the first major metagenomic effort that revealed the presence of diverse nitrogen-fixing microbial assemblages in indigenous RKB rhizospheric soil which can further be explored for improved crop yield/productivity. Electronic supplementary material The online version of this article (doi:10.1007/s13205-014-0238-5) contains supplementary material, which is available to authorized users.

The present study was aimed at observing the incidence pattern of pod fly and pod bug in pigeonpea ecosystem. The experiment was conducted at Agricultural Research Farm, Banaras Hindu University, Varanasi during the kharif season of the year 2010-11.The short duration pigeon pea was infested with the number of insect pests at various stages of crop growth. Out of which the incidence pattern of pod fly M. obtusa and pod bug C. gibbosa was studied. The first appearance of pod fly M. obtusa was noticed in the 42 standard week with a mean population of 0.10 maggot/Plant whose maggot population peaked in 45 standard weeks with a mean population of 0.30 maggot/Plant during year 2010-11. Similarly the first occurrence of pod bug C. gibbosa was recorded in 40 standard weeks with a mean population of 0.03 larvae/Plant which attained the peak during 44 and 45 standard weeks, in both the week themean population was 0.40 larvae/Plant. The incidence of all the insect pests although declined after attainment of their respective peak, but pod bug were noticed in the field till the harvest of the crop. To undertake an effective IPM strategy in pigeonpea crop, location specific information on occurrence and seasonal dynamics of insect pests is indispensible.

The search for new biosurfactant producing strains from uncommon or extreme microbial habitats has become increasingly important due to their biotechnological and environmental significance. In view of this, fourteen bacterial strains were isolated from eight different sea water samples obtained from various locations of Antarctica. All of them were screened for biosurfactant production and only the isolate BRI 10 was found to be positive in all the tests. It was identified as Oceanobacillus sp. BRI 10 based on 16S rRNA sequencing and phylogenetic analysis. The production of biosurfactant was found to be maximum (E24 = 55%) in the medium containing glucose (3%) and ammonium chloride (0.48%) at 30 °C, pH 8.0 at the end of 48 h. The biosurfactant was stable at higher temperature and at alkaline pH. TLC and FTIR analysis revealed that biosurfactant is a glycolipoprotein. It exhibited antimicrobial activity against Escherichia coli and no cytotoxicity against normal cell line. It is found to emulsify lubricant oil, crude oil, diesel and kerosene in the order kerosene > lubricant oil > diesel > crude oil. The emulsification activity (D610) of biosurfactant was 0.64 as compared to 0.31 with SDS. Crude oil biodegradation experiments resulted in 56 and 90% degradation on 9th and 27th day respectively. These results suggested its applicability against diverse hydrocarbon pollution.

Nitrogen (N) deficiency and low temperature conditions are the prominent facet of Western Himalayan agro-ecosystems. A slight change in the environment alters the protein expression of the microorganisms. Therefore, proteomes of the two psychrotrophs Dyadobacter psychrophilus B2 and Pseudomonas jessenii MP1 were analyzed using two dimensional electrophoresis and MALDI-TOF-MS, to determine the physiological response of altitudinally different but indigenous microorganisms in response to cold stress under N depleting conditions. Functional assessment of 150 differentially expressed proteins from both the psychrotrophs revealed several mechanisms might be involved in cold stress adaptation, protein synthesis/modifications, energy metabolism, cell growth/maintenance, etc. In both the proteomes, abundance of the proteins related to energy production and stress were significantly increased while, proteins related to biosynthesis and energy consuming processes decreased. ATP synthase subunit alpha, beta, ATP-dependent Clp protease, Enolase, groL HtpG and N(2)-fixation sustaining protein CowN proteins were found to be expressed in both B2 and MP1, similarly to previously studied diazotrophs under low temperature N2 fixing conditions and therefore, can be considered as a biomarker for monitoring the nitrogen fixation in cold niches. Nevertheless, in both the diazotrophs, a good fraction of the proteins were related to hypothetical proteins which are still uncharacterized, thereby, suggesting the need for in-depth studies on cold adapted diazotrophs and their adaptive mechanisms.

The ε-caprolactam is the monomer of the synthetic non-degradable nylon-6 and often found as nonreactive component of nylon-6 manufacturing waste effluent. Environmental consequences of its toxicity to natural habitats and humans pose a global public concern. Soil samples were collected from three designated solid waste dumpsites, namely, Abule-Egba, Olusosun and Isheri-Igando in Lagos State, Nigeria. Sixteen bacteria isolated from these samples were found to utilize the ε-caprolactam as a sole source of carbon and nitrogen at concentration of ≤20 g l(-1). The isolates were characterized using their 16S rRNA gene sequence and showed similarity with Pseudomonas sp., Proteus sp., Providencia sp., Corynebacterium sp., Lysinibacillus sp., Leucobacter sp., Alcaligenes sp. and Bordetella sp. Their optimal growth conditions were found to be at temperature range of 30 to 35 °C and pH range of 7.0-7.5. High Performance liquid chromatography analysis of the ε-caprolactam from supernatant of growth medium revealed that these isolates have potential to remove 31.6-95.7 % of ε-caprolactam. To the best of our knowledge, this study is first to report the ability of Proteus sp. and Bordetella sp. for ε-caprolactam utilization.

A novel phytoplasma subgroup strain SC-Phy385 (GenBank accession number HF586648) was found associated with Sugarcane Grassy Shoot (SCGS) disease in India. Sugarcane (Saccharum officinarum L.) leaf samples with 'grassy shoot' symptoms were collected from the western region of Maharashtra state. The analysis based on restriction fragment length polymorphism (RFLP) profiles and 16S rRNA gene sequences indicated that most of the phytoplasma strains belong to the 16SrXI-B group. However, SCGS phytoplasma strain SC-Phy385 showed unique RFLP profiles with a similarity coefficient of 0.87 using online interactive phytoplasma classification tool, iPhyClassifier. The actual and virtual RFLP profiles of SC-Phy385 using amplified products of the 16S rRNA partial gene and its multiple sequence alignment with other RYD group phytoplasma sequences revealed that this strain was different from phytoplasma groups described earlier, representing new subgroup 16SrXI-F. The 16S rRNA gene-based phylogenetic analysis of reported RYD and BGWL group phytoplasmas showed that they are a genetically diverse group of phytoplasmas.

A novel bacterial strain, MG7, with high cellulase activity was isolated and identified by morphological characteristics and molecular phylogeny analysis as Paenibacillus barcinonensis. Maximum production of cellulase by MG7 was observed at pH 7.0 and 35°C. The enzyme was purified with a specific activity of 16.88 U/mg, the cellulase activity was observed in a zymogram, and its molecular mass (58.6 kDa) was confirmed by SDS-PAGE. The purified enzyme showed maximum activity at pH 6.0 and 65°C and degraded cellulosic substrates such as carboxy methyl cellulose (CMC), Avicel, filter paper, and beta-glucan. The enzyme showed stability with 0.5% concentration of various surfactants. The K(m) and V(max) of cellulase for CMC and Avicel were found to be 0.459 mg/ml and 10.46 mg/ml/h, and 1.01 mg/ml and 10.0 mg/ml/h, respectively. The high catalytic activity and its stability to temperature, pH, surfactants, and metal ions indicated that the cellulase enzyme by MG7 is a good candidate for biotechnological applications.

Genetic improvement of sugarcane variety CoC 671 was carried out through somaclonal variation. The somaclones were obtained by developing callus on 0.8M EMS and 13.57M 2–4.D containing medium. All the 310 regenerated plants were hardened in green house and planted in field for preliminary selection. On the basis of biometric and biochemical parameters 17 somaclones were evaluated in rod row trial and then for smut resistance supplementing with smut inoculum and detection by PCR. The somaclonal variants TC 906 was resistant and TC 922 was moderately resistant to smut. Somaclone TC 922 (2.17 kg, 165 t/ha, 3.34 cm) and TC 906 (2.07 kg, 144.11 t/ha, 3.25 cm) were superior in single cane weight, cane yield and cane diameter over their donor CoC 671 (1.72 kg, 128 t/ha, 2.74 cm). The morphological variations viz. stem colour, internodal alignment, internodal waxiness and leaf width were distinct and stable. The present study reports beneficial traits of the somaclones derived from CoC 671 and their field performance, especially for smut resistance and yield traits and early maturity.

Altitude is the major factor affecting both biodiversity and soil physiochemical properties of soil ecosystems. In order to understand the effect of altitude on soil physiochemical properties and bacterial diversity across the Himalayan cold desert, high altitude Gangotri soil ecosystem was studied and compared with the moderate altitude Kandakhal soil. Soil physiochemical analysis showed that altitude was positively correlated with soil pH, organic matter and total nitrogen content. However soil mineral nutrients and soil phosphorus were negatively correlated to the altitude. RT-PCR based analysis revealed the decreased bacterial and diazotrophic abundance at high altitude. Metagenomic study showed that Proteobacteria, Acidobacteria and Actinobacteria were dominant bacteria phyla at high altitude soil while Bacteroidetes and Fermicutes were found dominant at low altitude. High ratio of Gram-negative to Gram positive bacteria at Gangotri suggests the selective proliferation of Gram negative bacteria at high altitude with decrease in Gram positive bacteria. Moreover, Alphaproteobacteria was found more abundant at high altitude while the opposite was true for Betaproteobacteria. Abundance of Cytophaga, Flavobacterium and Bacteroides (CFB) were also found comparatively high at high altitude. Presence of many taxonomically unclassified sequences in Gangotri soil indicates the presence of novel bacterial diversity at high altitude. Further, isolation of bacteria through indigenously designed diffusion chamber revealed the existence of bacteria which has been documented in unculturable study of WIH (Western Indian Himalaya) but never been cultivated from WIH. Nevertheless, diverse functional free-living psychrotrophic diazotrophs were isolated only from the high altitude Gangotri soil. Molecular characterization revealed them as Arthrobacter humicola, Brevibacillus invocatus, Pseudomonas mandelii and Pseudomonas helmanticensis. Thus, this study documented the bacterial and psychrophilic diazotrophic diversity at high altitude and is an effort for exploration of low temperature bacteria in agricultural productivity with the target for sustainable hill agriculture.

The influence of dried cell powder and culture filtrates of endophytic fungi on production of inophyllum in cell suspension cultures of leaf- and stem-derived callus of Calophyllum inophyllum was investigated. Two fungi, Nigrospora sphaerica and Phoma spp., endophytic to C. inophyllum, were isolated from leaf tissues, and were identified by both 18S rRNA gene amplification and sequencing. Elicitation of suspension cultures of both callus types of C. inophyllum with dried cell powder and culture filtrates of both fungi consistently elicited production of inophyllum A, B, C, and P. In comparison to stem-derived callus, suspension cultures of leaf-derived callus enhanced production of most inophyllum. Of the four inophyllum studied, the highest production of inophyllum A, C, and P was achieved in elicited suspension cultures of leaf-derived callus. Suspension cultures of stem-derived callus enhanced production only of inophyllum B. When suspension cultures of leaf-derived callus were elicited with 40 mg dried cell powder of Phoma spp., a level of 751-fold (6.84 mg/100 g elicited biomass) of inophyllum A was produced, compared to control. Whereas, a level of 414-fold (6.22 mg/100 g elicited biomass) of inophyllum B was produced when suspension cultures of stem-derived callus were elicited with 20 mg dried cell powder of N. sphaerica. When compared to control, a 10% culture filtrate of N. sphaerica in suspension cultures of leaf-derived callus elicited inophyllum C and P production by 928-fold (7.43 mg/100 g elicited biomass) and 750-fold (1.5 mg/100 g elicited biomass), respectively.

The sandal spike disease of sandalwood is known to be associated with aster yellows (AY) phytoplasmas and is a prime threat to sandalwood cultivation in India. The Marayoor Sandalwood Reserve (Kerala state) has an excellent collection of naturalised and matured sandalwood trees and therefore sandalwood forest were surveyed and symptomatic samples were collected from this area. The study confirmed the disease association with AY phytoplasmas and allow to verify the presence of a novel AY phytoplasma strains indicating that phytoplasma strains are differentiating with their plant host species and geographic regions.

Tamarind is an economically important tree species; its fruit pulp is widely used in kitchen in India. A symptomatic tamarind tree with yellow leaf symptoms found in the western part of India was assayed for phytoplasma presence. The 16S rDNA sequence of the detected phytoplasma (TM01) was found clustering with sequences in the elm yellows (16SrV) phytoplasma group. The virtual RFLP analysis of obtained 16S rDNA sequence TM01 revealed that it could be tentatively classified into a novel phytoplasma subgroup, 16SrV-L since its AluI, HaeIII and MseI restriction profiles of R16F2n/R16R2 sequenced amplicons generated were unique as compared to the earlier reported profiles of this phytoplasma subgroup. This is the first phytoplasma report in Tamarindus indica.

Agriculturally important microorganisms mainly comprise bacteria, fungi, cyanobacteria, phytoplasmas and other groups like viruses. Most of the bio-inoculant technology for plant growth promotion (PGP) and biological control of plant diseases is based on bacteria, fungi and cyanobacteria. Plant Pathogenic organisms like Phytoplasmas cause serious diseases in economically important plants. Rapid and authentic identification of agriculturally important microorganisms is imperative before their use in bio-inoculant formulation as well as for diagnosis of pathogens to prevent the crops from damage. Many agricultural microbiologists and plant pathologists are still using traditional approaches of identification of an organism resulting into poor resolution of its taxonomic status. Polyphasic approach of microbial classification using the phenetic, chemotaxonomic and genotypic methods in combinations is the recent approach in microbial taxonomy. In current chapter, we discussed the recent advances in the taxonomy of bacteria (including cyanobacteria and phytoplasma) and fungi. We appeal agricultural microbiologists and plant pathologist for the use of polyphasic approach for better delineation of organism in focus in addition to traditional approaches.

Nasare, K., Yadav, A., Singh, A. K., Shivasharanappa, K. B., Nerkar, Y. S., and Reddy, V. S. 2007. Molecular and symptom analysis reveal the presence of new phytoplasmas associated with sugarcane grassy shoot disease in India. Plant Dis. 91:1413-1418. A total of 240 sugarcane (Saccharum officinarum) plants showing phenotypic symptoms of sugarcane grassy shoot (SCGS) disease were collected from three states of India, Maharashtra, Karnataka, and Uttar Pradesh. Phytoplasmas were detected in all symptomatic samples by the polymerase chain reaction (PCR) amplification of phytoplasma-specific 16S rRNA gene and 16S-23S rRNA spacer region (SR) sequences. No amplification was observed when DNA from asymptomatic plant samples was used as a template. Sixteen samples were selected on the basis of phenotypic symptoms and geographic location, and cloning and sequencing of the 16S rRNA and spacer regions were performed. Multiple sequence alignments of the 16S rRNA sequences revealed that they share very high sequence similarity with phytoplasmas of rice yellow dwarf, 16SrXI. However, the 16S-23S rRNA SR sequence analysis revealed that while the majority of phytoplasmas shared very high (>99%) sequence similarity with previously reported sugarcane phytoplasmas, two of them, namely BV2 (DQ380342) and VD7 (DQ380343), shared relatively low sequence similarity (79 and 84%, respectively). Therefore, these two phytoplasmas may be previously unreported ones that cause significant yield losses in sugarcane in India.

Parthenium weed (Parthenium hysterophorus, Asteraceae) is a common, invasive weed found throughout the Indian subcontinent, Africa, America and Australia. The observed disease, Parthenium Witches’ Broom (PWB), characterised by phylloidy, stunting and prolific branching was observed during a field survey conducted between September 2014 to June 2015. PWB phytoplasma was detected in all symptomatic plant samples and in the previously reported insect vector, Orosius albicinctus belonging to family Cicadellidae (subfamily Deltocephalinae) and other Hemipteran insect samples by amplifying its 16S rRNA gene. To our knowledge, this is the first report of a ‘Ca. Phytoplasma aurantifolia’- related strains associated with witches’ broom disease of P. hysterophorus and insect vector Orosius albicinctus.