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Background Diatoms in genus Licmophora are found as epiphytes on marine shores and are members of fouling communities. They can be abundant on natural coral reef substrates such as filamentous algae and as fringes on Halimeda. Biodiversity of benthic tropical diatoms is generally poorly known. Several new species of Licmophora have been reported from Guam but many are still undescribed. Methods Samples of seaweeds with evident diatom coatings were collected during scuba dives, examined live, preserved in formalin, and processed with nitric acid cleaning following standard practice. Cleaned samples were examined in LM and SEM. Results We describe two species unusual in having an axial wave in the valve, and a further long, straight species. L. repanda n. sp. and L. undulata n. sp. were of similar lengths (ca. 200 μm long) and both had axial waves but L. undulata was more slender with an inflated basal pole, had colonies on mucilage pads vs. long, single-stranded mucilage stalks. In addition, L. undulata had one apical rimoportula vs. two, elongated areolae along the midrib vs. uniform areolae, and the valvocopular advalvar striae ended halfway along, whereas in L. repanda they continued to the end. L. joymaciae n. sp. grew on long, single-stranded mucilage stalks with valves 300–400 μm long, with two apical rimoportulae, and basal pole not inflated. As in L. undulata its valvocopular advalvar striae ended halfway along the band. Stria densities were different at apex vs. base in L. joymaciae but not in the two wavy species. In all species, the 4th pleura had an apical cap and a narrow band with a single row of pores but it was larger in L. joymaciae. The other three girdle bands did not present any major differences among the three species but are documented for future comparisons with other species. Conclusions Although the morphometric differences are small among the new species and between them and similar known species, the combinations of character states clearly shows that they are different.

Hyalosira gene sequences are divided into two clades within different families. We examined authentic material of Hyalosira (isotype material of H. obtusangula, synonymous with H. delicatula) and voucher specimens of published sequences, and pooled our observations of Hyalosira-like taxa from benthic and epizoic habitats in several parts of the globe. The two molecular clades corresponded to two morphological groups, with Hyalosira obtusangula associated with Grammatophoraceae. We emend the description and provide lectotypification for Hyalosira and propose Placosira to encompass the taxa in the other clade, associated with Rhabdonemataceae. We propose that Hyalosira has uniseriate to triseriate striae, sometimes different on valve face and mantle. Copulae in most species had shallow septa, though in one they were moderately deep. All species had girdle bands bearing two rows of areolae separated by a midrib. We name five new species of Hyalosira. Morphologies of taxa in the Placosira clade were superficially similar to Hyalosira but differed in having areolae with ricae, a single row of areolae on the girdle bands, and tubular rimoportulae on the valve-face-mantle junction. Hyalosira hustedtiana Patrick should revert to its original position in Striatella until the appropriate genus can be determined. We emend Rhabdonematales to encompass Rhabdonemataceae, Grammatophoraceae and Tabellariaceae. (C) 2021 Elsevier GmbH. All rights reserved.

We applied DNA metabarcoding to evaluate the ecology of genetic variants within several diatom species that are important for biomonitoring. Benthic diatoms are widely used as bioindicators for biomonitoring programmes, including those for European rivers demanded by Water Framework Directive (WFD). Morphological identification of diatoms at species level is required for assessing the ecological status in biomonitoring programmes. However, this is a time-consuming task and requires expert knowledge. In addition, closely related species, which sometimes are scarcely distinguishable on the basis of their morphology, can show different ecological preferences; these may even vary within a single diatom species. Not being able to identify the different ecological preferences shown by the genetic variants of a single species or closely related species, might have consequences for biomonitoring programmes, especially if such differences occur within common species. The key diatom species that we studied were: Fistulifera saprophila (FSAP), widely regarded as a marker for elevated nutrient levels, organic pollution and hence poor ecological status; Achnanthidium minutissimum (ADMI), which usually indicates good ecological status; and Nitzschia inconspicua (NINC) and N. soratensis (NSTS), two species that are widely separated phylogenetically but almost impossible to distinguish in the light microscope. Our dataset was based on high-throughput sequencing using a 312-bp rbcL marker. We used the denoising pipeline DADA2 to infer amplicon sequence variants (ASVs) from 554 environmental samples from river biomonitoring campaigns in Catalonia (NE Spain) and France. Ecological groupings of ASVs were distinguished according to their environmental responses given by Threshold Indicator Taxa ANalysis (TITAN); the environmental parameters that most influenced the occurrence of these groupings were tested using boosted regression trees. We could distinguish three different ecological groupings of ASVs within ADMI and three within FSAP. In each species two of the groupings were clearly separated by their opposite responses to calcium and conductivity and boosted regression trees showed that for three out of four of these groupings, these two variables were among the most important variables for explaining the ASV distributions. The third grouping in FSAP had a negative response to total organic carbon and a positive response to altitude and hence was better represented in less organically polluted waters and higher ecological status than is generally assumed for FSAP. Our analyses did not identify ecological groupings of ASVs within NINC and NSTS but confirmed earlier studies, based on more limited sampling, that indicated different preferences of these species. Conductivity and calcium were the variables that most influenced the occurrence of NINC and NSTS, NINC being better distributed in waters with higher levels of calcium and conductivity than NSTS. Our findings indicate the potential use of DNA metabarcoding for distinguishing the ecological preferences of genetic variants within a single species or closely related species. This information, coupled with the broad knowledge generated over many years using traditional microscope-based identifications, will facilitate the development of more accurate biological indexes for the biomonitoring programmes of the future.

Diatoms, eukaryotic algae with silica cell wall have been proved to be reliable bioindicators and are applied in ecological status assessment of aquatic ecosystems using indices calculated from pollution sensitivity and indicator values of species. Traditional method of identification of diatom species is based on morphological features of frustule that requires in-depth taxonomical knowledge and expertise. Metabarcoding that combines barcodes and high-throughput sequencing offers a promising alternative. In this pilot study we tested the applicability of metabarcoding of benthic diatom assemblages for ecological status assessment of water bodies in Hungary comparing its performance to that of morphology-based identification of species. Samples from 78 rivers and streams arranged along a trophic gradient and 14 soda pans representing unique types of habitats were investigated. Sequences of the barcode region of rbcL gene suggested by Vasselon et al. (2017) were acquired revealing 1135 diatom amplicon sequence variants (ASVs) of which 54% could be assigned at species level using Diat.barcode (Rimet et al. 2019) as reference database. Morphological investigation detected more species and intraspecific taxa in the lotic and lentic samples (413 and 78, respectively) than metabarcoding (190 and 75). Correspondence between taxa detected based on morphology and DNA sequences was relatively low (on average 24% in lotic and 26% in lentic samples) but considerably increased (on average 66% and 56%, respectively) when taking into account only the taxa reaching higher than 5% relative abundance in microscopy counting. The differences mainly derived from that a considerable portion (59% and 32%, respectively) of the morphologically identified taxa were not recorded in the reference database. Community structure of samples from both running and standing waters based on microscopy and DNA sequence analysis showed significant correlation as revealed using Mantel test. For rivers and streams diatom index IPS (Specific Pollution Sensitivity Index, (Coste in Cemagref, 1982) for soda pans indices H (Ziemann et al., 2001) and IBD (Indice Biologique Diatomées, Lenoir and Coste, 1996) were calculated from the results of the two aspects. Strong correlation was found between morphology- and sequence-based indices and in about half of the samples, the ecological status class obtained with the two methods coincided. Our results suggest that metabarcoding inheres a great opportunity and could be successfully applied in benthic diatom-based ecological status assessment of Hungarian waters after the reference database is supplemented with taxa frequently occurring in these habitats. References Cemagref, 1982. Etude des méthodes biologiques quantitativesd’appréciation de la qualité des eaux, Rapport Division Qualité des Eaux Lyon. Agence financière de Bassin Rhône-Méditerranée-Corse, Pierre-Bénite, France. Lenoir, A., Coste, M., 1996. Development of a practical diatom index of overall water quality applicable to the French National Water Board Network. Presented at the International symposium, Volksbildungsheim Grilhof Vill, AUT, 17-19 September 1995, Universität Innsbruck, pp. 29–43. Rimet, F., Gusev, E., Kahlert, M., Kelly, M.G., Kulikovskiy, M., Maltsev, Y., Mann, D.G., Pfannkuchen, M., Trobajo, R., Vasselon, V., Zimmermann, J., Bouchez, A., 2019. Diat.barcode, an open-access curated barcode library for diatoms. Sci. Rep. 9, 15116. Vasselon, V., Rimet, F., Tapolczai, K., Bouchez, A., 2017. Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island, France). Ecol. Indic. 82, 1–12. Ziemann, H., Kies, L., Schulz, C.-J., 2001. Desalinization of running waters: III. Changes in the structure of diatom assemblages caused by a decreasing salt load and changing ion spectra in the river Wipper (Thuringia, Germany). Limnologica 31, 257–280.

Benthic diatom indices developed in the Europe Union have been widely accepted as indicators of the trophic state and water quality in freshwater ecosystems. In China, most of the benthic diatom-based indices have not been widely tested or evaluated before. For this purpose, the water quality parameters and benthic diatoms community structures at 20 sample sites in the dish lake of Nanjishan Nature Reserve in Poyang Lake were investigated in this study and 18 widely-applied diatom indices were established. The statistical results indicated that most water quality parameters including Total Nitrogen (TN), Total Phosphorus (TP), ammonia nitrogen (NH4+), Chemical Oxygen Demand (COD) and Chlorophyll (Chl) were highly correlated with each other at a confidence level of 0.05. Water quality sampling sites from 8 lakes could be classified into 4 groups based on the integrated comprehensive scores using principal components analysis (PCA). Monitoring sites could also be divided into 4 groups based on clustering analysis with hierarchical methods for diatom dominant species in 20 sampling sites. According to the status of water ecological health recognition and box plot analysis in different water quality groups and diatom dominant species groups, only 3 diatom indices including the Biological Diatom Index (IBD), Specific Pollution Sensitivity Index (IPS) and Louis Leclercq Diatom Index (IDSE) demonstrated good evaluation suitability and good correlation within different water quality grades at the final stage. The above results revealed that IBD, IPS and IDSE were the most suitable diatom indices for the water quality evaluation of the dish lake in the Nanjishan Nature Reserve, Lake Poyang.

Ongoing climatic change and anthropogenic pressure highlight the importance of reliable assessment of the ecological status of freshwaters. Bioindicators are used widely in ecological assessments as biotic assemblages reflect the environmental conditions in current ecosystems. However, the robustness of bioindicators relies on the transferability of indices and models outside the regions they were derived from. We tested the reliability of stream diatom assemblages as indicators of water chemistry and climatic factors in a cross-regional assessment by developing a predictive model with diatom assemblage data from Sweden and using it to model stream conditions in Finland. The inference models and predictions were performed using the Boosted Regression Trees (BRT) method, separately in species and genus levels. The predictive performance of the calibration models in Sweden were good or moderate for both water chemistry and climatic variables, both at species and genus levels. The most important climatic (growing degree days, r2 = 0.57) and water chemistry variables (pH, r2 = 0.65; and total phosphorus (TP), r2 = 0.52) could be inferred from diatom assemblages relatively well. However, predictive performances of the cross-regional models were low (r2 ≤ 0.13). Nevertheless, water chemistry variables, conductivity (r2 = 0.13) and TP (r2 = 0.12), were predicted the best. The most important diatom indicators for climatic and environmental variables varied between Sweden and Finland. The study showed that diatom assemblages can be robust indicators of water chemistry and climatic variables within the region where the inference models are calibrated. However, their indicator ability may be weak between regions. The reason for the low transferability of the diatom inference models may stem from between-region differences in species realized niches, species pools and/or ecosystems, local adaptation or species identification. Hence, models should only be used with caution in geographical contexts other than the one where they were developed. The calibration data should cover as large geographical area as possible to give reliable predictions when applied in smaller regions.

Biofilms were allowed to develop on ceramic tiles placed in closed containers on the shore of Potter Cove, 25 de Mayo (King George) Island. Water pumping from the cove inside the containers extended for 25 days. Diatoms were the dominant microalgae in these biofilms, which were removed from a set of tiles to a) characterize the extracellular mucilage, b) carry out floristic determination and c) perform grazing experiments with the limpet Nacella concinna. Biofilms mucilaginous matrix consisted of proteins and carbohydrates. Room temperature aqueous extraction of the freeze-dried material rendered a fraction enriched in the storage glucan chrysolaminarin, its identity confirmed by methylation structural analyses. Hot water extracted products showed greater heterogeneity in monosaccharide composition, including glucose, mannose, galactose, fucose, xylose and rhamnose. Diatom identification revealed that Pseudogomphonema kamtschaticum was the dominant species followed by several Navicula species, Nitzschia pellucida and Synedra kerguelensis. Photographical survey of colonized tiles placed in glass flasks together with a specimen of Nacella concinna exhibited between 5 and 30% removal of the biofilms coverage after 24 h of exposure to the limpet, suggesting that EPS and chrysolaminarin constitute a C-source for the gastropod., Yasmin Daglio, Hernán Sacristán, Martín Ansaldo, María C.Rodríguez南極キングジョージ島、Potter Coveの海岸に陶器のタイルを設置し、25日間でのバイオフィルムの発達実験を行った。バイオフィルム中では珪藻が優占したが、そこからa）細胞外粘液質の特徴、b）植物相の同定、c）カサガイの一種Nacella concinnaを用いた囓り取り実験を行った。バイオフィルムの粘液層は、タンパク質と炭水化物からなり、グルカノ-クリソラミナリンやグルコースなどの多様な単糖類が含まれていた。珪藻を同定したところ、Pseudogomphonema kamtschaticumが優占し、Naviculaなどがそれに続く事が明らかになった。カサガイによる囓り取りは、24時間で5～30%で、EPSとクリソラミナリンは彼らの炭素源となっていることが示唆された。

The Sava River Basin is a major drainage basin of southeastern Europe, significantly influenced by anthropogenic activities. Our study was focused on diatom communities as an indicator of the ecological status of running waters. We investigated over 937km of the Sava River at 19 sampling sites. Benthic diatom communities and 17 diatom indices were analyzed along with a large set of environmental parameters. CCA revealed that the most important elements along the spatial gradient were As and Si. Our results show that the species Navicula recens (Lange-Bert.) Lange-Bertalot and Eolimna minima (Grunow) Lange-Bertalot are very abundant at downstream localities where the highest concentrations of As were measured. The number of motile diatoms increased along the nutrient gradient, i.e. with Si availability. Correlations between diatom indices and selected environmental factors showed that temperature, As, Si and Fe are in significant negative correlation with most diatom indices. Analysis revealed the influence of As and metals in water on diatoms, although their concentrations did not exceed environmental standards. While our findings do not confirm that diatom indices reveal the intensity of pressures solely caused by nutrient and/or organic pollutants, they suggest that in moderately polluted large rivers benthic diatoms are good bioindicators of multiple pressures, and that diatom indices could serve as indicators of the level of overall degradation of an ecosystem.

The species richness and community composition of the diatom communities were studied in the Baltic Sea, Northern Europe, to enhance knowledge about the diversity of these organisms in a brackish water ecosystem. Many organisms in the Baltic Sea have been studied extensively, but studies investigating littoral diatoms are scarce. The goal of this study was to examine the importance of climatic, spatial and water physicochemical variables as drivers of epilithic diatoms in the Gulf of Finland and the Gulf of Bothnia. The variation in species richness was best explained by pH, total phosphorus and total nitrogen. Redundancy Analysis indicated that the most important factors correlating with species composition were air temperature, silicon, total phosphorus, water temperature, salinity and pH. Variation Partitioning showed that the species composition was mostly affected by climatic and spatial variables, whereas physicochemical variables had little impact. However, the strongest factor was the combined influence of climatic, spatial and physicochemical variables. The results suggest that diatom species richness in the northern Baltic Sea is primarily regulated by local factors, while climatic and spatial variables have little impact on richness. Species composition is mostly affected by climatic and spatial variables. We conclude that understanding the distribution patterns of Baltic Sea diatoms requires the inclusion of climatic, spatial and water chemistry variables.

Our study of 164 diatom samples from Catalonia (NE Spain) is the first to evaluate the applicability of DNA metabarcoding, based on high throughput sequencing (HTS) using a 312-bp rbcL marker, for biomonitoring Mediterranean rivers. For this, we compared the values of a biotic index (IPS) and the ecological status classes derived from them, between light microscope-based (LM) and HTS methods. Very good correspondence between methods gives encouraging results concerning the applicability of DNA metabarcoding for Catalan rivers for the EU Water Framework Directive (WFD). However, in 10 sites, the ecological status class was downgraded from “Good”/“High” obtained by LM to “Moderate”/“Poor”/“Bad” by HTS; these “critical” sites are especially important, because the WFD requires remedial action by water managers for any river with Moderate or lower status. We investigated the contribution of each species to the IPS using a “leave-one-out” sensitivity analysis, paying special attention to critical sites. Discrepancies in IPS between LM and HTS were mainly due to the misidentification and overlooking in LM of a few species, which were better recovered by HTS. This bias was particularly important in the case of Fistulifera saprophila, whose clear underrepresentation in LM was important for explaining 8 out of the 10 critical sites and probably reflected destruction of weakly-silicified frustules during sample preparation. Differences between species in the rbcL copy number per cell affected the relative abundance obtained by HTS for Achnanthidium minutissimum, Nitzschia inconspicua and Ulnaria ulna, which were also identified by the sensitivity analysis as important for the WFD. Only minor IPS discrepancies were attributed to the incompleteness of the reference library, as most of the abundant and influential species (to the IPS) were well represented there. Finally, we propose that leave-one-out analysis is a good method for identifying priority species for isolation and barcoding. info:eu-repo/semantics/acceptedVersion

Diatoms are so important in ocean food-webs that any human induced changes in their abundance could have major effects on the ecology of our seas. The large chain-forming diatom Biddulphia biddulphiana greatly increases in abundance as pCO2 increases along natural seawater CO2 gradients in the north Pacific Ocean. In areas with reference levels of pCO2, it was hard to find, but as seawater carbon dioxide levels rose, it replaced seaweeds and became the main habitat-forming species on the seabed. This diatom algal turf supported a marine invertebrate community that was much less diverse and completely differed from the benthic communities found at present-day levels of pCO2. Seawater CO2 enrichment stimulated the growth and photosynthetic efficiency of benthic diatoms, but reduced the abundance of calcified grazers such as gastropods and sea urchins. These observations suggest that ocean acidification will shift photic zone community composition so that coastal food-web structure and ecosystem function are homogenised, simplified, and more strongly affected by seasonal algal blooms.

River impoundment constitutes one of the most important anthropogenic impacts on the World’s rivers. An increasing number of studies have tried to quantify the effects of river impoundment on riverine ecosystems over the past two decades, often focusing on the effects of individual large reservoirs. This study is one of the first to use a large-scale, multi-year diatom dataset from a routine biomonitoring network to analyse sample sites downstream of a large number of water supply reservoirs (n = 77) and to compare them with paired unregulated control sites. We analysed benthic diatom assemblage structure and a set of derived indices, including ecological guilds, in tandem with multiple spatio-temporal variables to disclose patterns of ecological responses to reservoirs beyond the site-specific scale. Diatom assemblage structure at sites downstream of water supply reservoirs was significantly different to control sites, with the effect being most evident at the regional scale. We found that regional influences were important drivers of differences in assemblage structure at the national scale, although this effect was weaker at downstream sites, indicating the homogenising effect of river impoundment on diatom assemblages. Sites downstream of reservoirs typically exhibited a higher taxonomic richness, with the strongest increases found within the motile guild. In addition, Trophic Diatom Index (TDI) values were typically higher at downstream sites. Water quality gradients appeared to be an important driver of diatom assemblages, but the influence of other abiotic factors could not be ruled out and should be investigated further. Our results demonstrate the value of diatom assemblage data from national-scale biomonitoring networks to detect the effects of water supply reservoirs on instream communities at large spatial scales. This information may assist water resource managers with the future implementation of mitigation measures such as setting environmental flow targets.

Twenty-three water dams located in the Iberian Pyrite Belt were studied during March 2012 (early spring) in order to carry out an environmental assessment based on diatom communities and to define the relationships between these biological communities and the physico-chemical characteristics of the dam surface water. This is the first time that a diatom inventory has been done for dams affected by acid mine drainage (AMD) in the Spanish part of the Iberian Pyrite Belt (IPB). It was found that the pH was the main factor influencing the behaviour of the diatom communities. Then, using a dbRDA approach it was possible to organize the aggrupation of diatoms into four groups in response to the physico-chemical conditions of the ecosystem, especially pH: (1) Maris, Aac, Gos, Cmora (pH 2&ndash, 3), (2) Andc, San, And, Dpin (pH 3&ndash, 4.5), (3) Gran, Pleon, Oliv, Lagu, Chan, SilI, SilII, Joya, Gar, Agrio, Camp, Corum (pH 4.5&ndash, 6), (4) Herr, Diq I, Diq II (pH 6&ndash, 7). The obtained results confirmed the response of benthic diatom communities to changes in the physico-chemical characteristics of surface water, and helped to understand the role of diatoms as indicators of the degree of AMD contamination in those 23 dams. Special attention was given to those that have an acidophilic or acid-tolerant profile (pH 2&ndash, 3 and pH 3&ndash, 4.5) such as Pinnularia aljustrelica, Pinnularia acidophila, Pinnularia acoricola and Eunotia exigua, which are the two groups found in the most AMD contaminated dams.

The current decrease in biodiversity affects all ecosystems, and the impacts of diversity on ecosystem functioning need to be resolved. So far, marine studies about diversity?ecosystem productivity-relationships have concentrated on small-scale, controlled experiments, with often limited relevance to natural ecosystems. Here, we provide a real-world study on the effects of microorganismal diversity (measured as the diversity of benthic diatom communities) on ecosystem productivity (using chlorophyll a concentration as a surrogate) in a heterogeneous marine coastal archipelago. We collected 78 sediment cores at 17 sites in the northern Baltic Sea and found exceptionally high diatom diversity (328 observed species). We used structural equation models and quantile regression to explore relationships between diatom diversity and productivity. Previous studies have found contradictory results in the relationship between microorganismal diversity and ecosystem productivity, but we showed a linear and positive basal relationship between diatom diversity and productivity, which indicates that diatom diversity most likely forms the lowest boundary for productivity. Thus, although productivity can be high even when diatom diversity is low, high diatom diversity supports high productivity. The trait composition was more effective than taxonomical composition in showing such a relationship, which could be due to niche complementarity. Our results also indicated that environmental heterogeneity leads to substantial patchiness in the diversity of benthic diatom communities, mainly induced by the variation in sediment organic matter content. Therefore, future changes in precipitation and river runoff and associated changes in the quality and quantity of organic matter in the sea, will also affect diatom communities and, hence, ecosystem productivity. Our study suggests that benthic microorganisms are vital for ecosystem productivity, and together with the substantial heterogeneity of coastal ecosystems, they should be considered when evaluating the potential productivity of coastal areas.

Species occurrences are influenced by numerous factors whose effects may be context dependent. Thus, the magnitude of the effects and their relative importance to species distributions may vary among ecosystems due to anthropogenic stressors. To investigate context dependency in factors governing microbial bioindicators, we developed species distribution models (SDMs) for epilithic stream diatom species in human-impacted and pristine sites separately. We performed SDMs using boosted regression trees for 110 stream diatom species, which were common to both data sets, in 164 human-impacted and 164 pristine sites in Finland (covering similar to 1,000 km, 60 degrees to 68 degrees N). For each species and site group, two sets of models were conducted: climate model, comprising three climatic variables, and full model, comprising the climatic and six local environmental variables. No significant difference in model performance was found between the site groups. However, climatic variables had greater importance compared with local environmental variables in pristine sites, whereas local environmental variables had greater importance in human-impacted sites as hypothesized. Water balance and conductivity were the key variables in human-impacted sites. The relative importance of climatic and local environmental variables varied among individual species, but also between the site groups. We found a clear context dependency among the variables influencing stream diatom distributions as the most important factors varied both among species and between the site groups. In human-impacted streams, species distributions were mainly governed by water chemistry, whereas in pristine streams by climate. We suggest that climatic models may be suitable in pristine ecosystems, whereas the full models comprising both climatic and local environmental variables should be used in human-impacted ecosystems.

Even though microscopic algae play pivotal role in the healthy functioning of freshwater ecosystems, recent water protection strategies rarely consider them and primarily focus on macroscopic organisms. Here, we studied the effect of protection level and utilization type of lowland standing waters on the composition and diversity of benthic diatom assemblages and on the diatom-based ecological status of waters. We hypothesized that (i) protected waters will sustain more diverse diatom assemblages and better ecological quality than not protected ones. We also hypothesized that (ii) the increase in number of utilization will affect negatively on biodiversity and on ecological quality. Clear taxonomic differences were revealed only in protected and not utilized waters while trait composition in protected waters was independent from the utilization type. Neither biodiversity nor ecological status of waters were influenced by protection level. The increase in number of utilization types, however, significantly decreased functional richness. Although high biodiversity of algae can effectively buffer the negative effects of climate change and anthropogenic impact, recent protection strategies are insufficient to support it.

Benthic diatoms have traditionally been used as bioindicators of aquatic ecosystems. Because diatom-based monitoring of water quality is required by European legislation, molecular-based methods had emerged as useful alternatives to classical methods based on morphological identification using light microscopy. The aim of this study was to test the reliability of DNA metabarcoding combined with High-Throughput Sequencing (HTS) techniques in the bioassessment of the trophic status of 22 Mediterranean shallow ponds in NW Spain. For each pond, the Trophic Diatom Index (TDI) was calculated from inventories obtained by identification using light microscopy (LM) followed by high-throughput sequencing (HTS) at the molecular level. Ponds were subsequently classified into five water quality classes. The results showed a good correspondence between both methods, especially after applying a correction factor that depended on the biovolume of the cells. This correspondence led to the assignment to the same quality class in 59% of the ponds. The determination and quantification of valves or DNA sequences was one of the main pitfalls, which mainly included those related to the variability in the relative abundances of some species. Accordingly, ponds with similar relative abundances for the dominant species were assigned to the same quality class. Moreover, other difficulties leading the discrepancies were the misidentification of some species due to the presence of semi-cryptic taxa, the incompleteness of the reference database and the bioinformatic protocol. Thus, the validation of DNA-based methods for the identification of freshwater diatoms represents an important goal, as an alternative to using traditional methods in Mediterranean shallow ponds.

The condition of New Zealand's remnant wetlands has been documented by landscape-scale assessments such as the Index of Ecological Integrity and Wetland Condition Index. We explored the potential for microscopic aquatic biota (epiphytic diatoms) to provide complementary information about wetland condition using data from 77 lowland sites (mainly palustrine swamps) with circumneutral pH. In the South Island, correspondence between diatoms and wetland indices or water quality was weak. In the North Island, conductivity and total dissolved nitrogen (TDN) together explained 49% of the variance in assemblage composition and several diatom genera were indicative of high or low conductivity, dissolved phosphorus and TDN. Changes in these water quality variables may trigger changes in wetland condition, which are eventually reflected by the landscape-scale indices. Diatoms respond rapidly to water quality changes suggesting potential for diatom indicator taxa to provide early warning of wetland degradation or to track restoration.

"The Mesa River (MR) in the Iberian Range (Spain) displays prominent, Pleistocene to present-day fluvial tufa deposits. Little of their associated microbiota has been studied to date despite the regional and historical relevan- ce of these calcareous buildups. Goals . This paper is a preliminary exploration of the diatom (Bacillariophyta) genera associated with actively-growing tufa from 10 benthic environments along 24 km of the Mesa River. Methods . Bright- field microscopy, as well as consultation with specialists and specialized literature was used for taxonomic classifi- cation of diatoms. Results . We identified 25 diatom genera in three different types of sedimentary facies (porous and moss-algae rich, dense-laminated, and tufa-free gravel). Most diatoms were raphid pennate (class Bacillariophyceae), while a few were centric (class Coscinodiscophyceae) or araphid pennate (class Fragilariophyceae). They appeared as integral components of the tufa structure along with cyanobacteria and other algae and mosses. Conclusions . Toge- ther with previous studies on the hydrochemistry and sedimentology of the MR, our interpretations suggest that HCO 3 - , pCO 2 , Ca 2+ , and TDIC negatively affect diatom richness and that their abundance is positively related to the presence of mosses and algae."

The Antarctic Peninsula experiences a fast retreat of glaciers, which results in an increased release of particles and sedimentation and, thus, a decrease in the available photosynthetic active radiation (PAR, 400-700 nm) for benthic primary production. In this study, we investigated how changes in the general sedimentation and shading patterns affect the primary production by benthic microalgae, the microphytobenthos. In order to determine potential net primary production and respiration of the microphytobenthic community, sediment cores from locations exposed to different sedimentation rates and shading were exposed to PAR of 0-70 mu.mol photons m(-2)s(-1). Total oxygen exchange rates and microphytobenthic diatom community structure, density, and biomass were determined. Our study revealed that while the microphytobenthic diatom density and composition remained similar, the net primary production of the microphytobenthos decreased with increasing sedimentation and shading. By comparing our experimental results with in situ measured PAR intensities, we furthermore identified microphytobenthic primary production as an important carbon source within Potter Cove's benthic ecosystem. We propose that the microphytobenthic contribution to the total primary production may drop drastically due to Antarctic glacial retreat and related sedimentation and shading, with yet unknown consequences for the benthic heterotrophic community, its structure, and diversity.

In this study we explored the use of less conventional diatom metrics (motility, nuclear abnormalities and ecological guilds) to measure changes in diatom assemblages related to the transfer of epipelic communities from urban impacted streams to less impacted sites. Three lowland streams in the Argentine Pampean plain were selected, and two sites were established per stream for a total of six sites. Three sites were referenced as low urban impact (LI), as they run through peri-urban areas, and three downstream sites were referenced as high impact sites (HI), since they run through a dense urban area. Six germination trays filled with stream sediment were placed at each HI site, and three at each LI site, and left to be colonized for 30 days before transferring three trays from the HI sites to their respective LI site upstream. Samples were collected at days 0, 15, 30 and 45 days from each tray, and diatom species were identified and classified into ecological guilds. Motility variables were measure per individual of the genera Nitzschia (path length, velocity and maximum velocity) through video recording. Also, the frequency of abnormal nuclear locations and nuclear membrane breakage were determined. Results showed that there were no significant differences in any motility metrics, while the nuclei variables exhibited higher proportion of abnormally positioned nuclei and nuclear membrane breakage at the HI sites. The proportion of nuclear membrane breakage decreased over time in the translocated assemblage, indicating that it could be a sensitive indicator of water quality improvement, while the ecological guilds showed significant differences on the proportion of high profile and motile diatoms. The improvement in water quality produced a significative increase in the proportion of the high profile guild in the translocated biofilm. Despite the motile forms being the dominant group, the water quality improvement allowed the high profile forms, to colonize the substrate. These results emphasize the possible use of the ecological guilds as a suitable indicator of water quality improvement in Pampean streams, especially in nutrient rich environment. These tools can provide a rapid assessment of diatom condition and could be considered supplementary to biomonitoring protocols in lowland streams. Fil: Nicolosi Gelis, María Mercedes. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Limnología "Dr. Raúl A. Ringuelet". Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología; Argentina Fil: Cochero, Joaquin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Limnología "Dr. Raúl A. Ringuelet". Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología; Argentina Fil: Donadelli, Jorge Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Limnología "Dr. Raúl A. Ringuelet". Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología; Argentina Fil: Gomez, Nora. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Limnología "Dr. Raúl A. Ringuelet". Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología; Argentina

International audience; Meiofauna have a strong role in the functioning of coastal ecosystems but how their food sources affect their community structure remains unclear, likely due to the influence of abiotic parameters and the small size of these organisms. The meiofauna and their potential food sources were sampled in several intertidal habitats (i.e., mudflat, seagrass bed, sandflat) of the Marennes-Oléron Bay, France, and the Sylt-Rømø Bight, Germany, to assess the relationships between habitat characteristics and meiofauna community structure. Biomass and quality (carbon/chlorophyll a ratios) of food sources were estimated. Meiofauna community structure based on density and biomass was determined, as well as nematode diversity and feeding types. Meiofauna density and biomass varied highly within habitats and within ecosystems, ranging from 1.7 × 10⁵ to 3.4 × 10⁶ ind. m⁻² and from 0.057 to 1.541 gC m⁻², respectively. Benthic microalgae and sediment organic matter are important drivers in these food webs as the density of two important trophic groups of nematodes, non-selective deposit feeders and epigrowth feeders, varied in accordance with these food sources. No clear relationship was observed between bacterial biomass and selective deposit feeders (i.e., bacterivores) probably due to the high production rate of bacteria. Complementary information about production rates of food source as well as data from trophic markers would provide complimentary information to better understand flows of organic matter in intertidal habitats, particularly for opportunistic species such as non-selective deposit feeders.

Benthic diatoms are an indispensable link of the water ecological system in terms of energy flow and material cycling, and they directly or indirectly reflect the status of the water environment. We sampled benthic diatoms and environmental factors from April to May of 2013 from 53 sites along the Ying River to study their application in local water trophic status assessment, with a focus on the dominant benthic diatom species, their composition and distribution pattern, and the relationship between benthic diatoms and environmental factors. A total of 370 species and varieties were identified, belonging to 56 genera and six orders. The dominant species were as follows: Nitzschia inconspicua Grunow, Achnanthidium minutissimum (K&uuml, tzing) Czarnecki, Navicula aitchelbee L. L. Bahls, Nitzschia palea (K&uuml, tzing) Smith, Cyclotella meneghiniana K&uuml, tzing, Navicula submuralis Hustedt and Mayamaea atomus (K&uuml, tzing) Lange-Bertalot. The Ying River was divided into five orders using the Strahler method and three regions according to total nitrogen, total phosphorus and ammonia nitrogen. In region Y-1, which had the lowest nutrient level, the dominant species was Achnanthidium minutissimum. In region Y-2, which had the highest nutrient level, Navicula aitchelbee, Nitzschia palea, and Cyclotella meneghiniana were dominant, while in region Y-3, which had moderate nutrient levels, Nitzschia inconspicua was dominant. Pearson&rsquo, s correlation analysis and canonical correspondence analysis (CCA) revealed a significant correlation between the environmental factors with dominant species and diatom indices (especially the SPI). Our study indicates that dominant species and diatom indices can, to some extent, indicate the environment, especially nutrient distribution.

Understanding the drivers of community structure is an important topic in ecology. We examined whether different species trait groups of stream diatoms (ecological guilds and specialization groups) show divergent responses to spatial and environmental factors in a subarctic drainage basin. We used local- and catchment-scale environmental and spatial variables in redundancy analysis and variation partitioning to examine community structuring. Local and catchment conditions and spatial variables affected diatom community structure with different relative importance. Local-scale environmental variables explained most of the variation in the low-profile and motile guilds, whereas local and spatial variables explained the same amount of the variation in the high-profile guild. The variations in the planktic guild and the specialist species were best explained by spatial variables, and catchment variables explained most variation only in generalist species. Our study showed that diatom communities in subarctic streams are a result of both environmental filtering and spatial processes. Our findings also suggested that dividing whole community into different groups by species traits can increase understanding of metacommunity organization.

Diatoms are unicellular algae playing a key role as photosynthetic organisms in the world’s ocean food webs. The chemical ecology of planktonic diatoms is well documented, but few studies have reported on the effects of benthic diatoms on their consumers, also due to difficulties in the collection, quantification and massive culturing of benthic species. Here for the first time we investigate the effects of feeding on two abundantly occurring benthic diatoms, Nanofrustulum shiloi and Cylindrotheca closterium, isolated from the leaves of the seagrass Posidonia oceanica, on the sea urchin Paracentrotus lividus. Adult P. lividus were fed for one month on diets of either one of the two diatoms and on the green alga Ulva rigida, used as a feeding control. By combining morphological, metabolomic and de novo transcriptomic approaches, we demonstrate toxigenic effect on embryos generated by females fed with these benthic diatoms. Furthermore, chemical analysis reveal the presence of polyunsaturated aldehydes only for N. shiloi, and a high production of other oxylipins (cytotoxic compounds on their grazers and on cancer cell lines) for both diatoms, including some additional peaks not correlated to the canonic oxylipins commonly observed in planktonic diatoms. These findings open new perspectives in the study of diatom secondary metabolites influencing their grazers.

The first German intercalibration exercise for benthic diatoms was conducted to improve the application of the implementation of the European Water Framework Directive for running waters and lakes in Germany. The intercalibration exercise revealed several taxonomic problems. Among others, considerable problems occurred with identifying and differentiating species of the following four groups: (I) Amphora indistincta Levkov and A. pediculus (Kützing) Grunow, (II) Cocconeis placentula var. euglypta Ehrenberg and C. placentula var. lineata (Ehrenberg) Van Heurck, (III) Navicula cryptotenella Lange-Bertalot and N. cryptotenelloides Lange-Bertalot and (IV) N. reichardtiana Lange-Bertalot and N. caterva Hohn & Hellermann. The taxonomic problems that emerged occurred due to both insufficient use of given taxonomic details (by limnologists) and ambiguous species descriptions and documentation (by taxonomists). Thus, we recommend to the applied limnologist to use the mandatory identification literature and to document any ambiguous valves during routine counts. Also, it would be desirable to further investigate certain species by taxonomists and, in general, to provide more basic data with species descriptions or in identification manuals. These measures will improve the use of diatoms as bioindicators and consequently benefit both applied limnologists and taxonomists.

Biological activities in marine soft-sediments can modify the sedimentary environment through processes that change erosion rates. In low-energy environments, bioturbating macrofauna destabilizes sediments while microbes bind sediments and stabilize them. The degree to which these counter-acting processes influence sediment movement in a physically dynamic environment has not been well quantified. In a field experiment, we established 56 (1 m(2)) plots on an exposed intertidal sandflat. We used shade cloth and manipulated grazing pressure exerted by the deposit-feeding bivalve Macomona liliana (0-200 ind. m(-2)) to alter the microphytobenthic community. Three months post-manipulation, initiation of sediment transport (T-c) and change in sediment erosion rate with increasing bed shear stress (m(e)) were measured. Mean grain size, density of the spionid polychaete Aonides trifida, density of adult M. liliana, and bulk carbohydrate concentration could account for 54% of the variation in T-c (0.3-1.1 N m(-2) s(-1)). Mean grain size was the only significant predictor (p

Diatoms constitute the most diverse group of microalgae and have long been recognised for their large biotechnological potential. In the wake of growing research interest in new model species and development of commercial applications, there is a pressing need for long-term preservation of diatom strains. While cryopreservation using dimethylsulfoxide (DMSO) as a cryoprotective agent is the preferred method for long-term strain preservation, many diatom species cannot be successfully cryopreserved using DMSO. Therefore, in this study, we studied cryopreservation success in six different diatom species, representing the major morphological and ecological diatom groups, using a range of DMSO concentrations and Plant Vitrification Solution 2 (PVS2) as an alternative cryoprotectant to DMSO. In addition, we tested whether suppressing bacterial growth by antibiotics accelerates the post-thaw recovery process. Our results show that the effects of cryoprotectant choice, its concentration and the addition of antibiotics are highly species specific. In addition, we showed that PVS2 and antibiotics are useful agents to optimize cryopreservation of algae that cannot survive the traditional cryopreservation protocol using DMSO. We conclude that a species-specific approach will remain necessary to develop protocols for diatom cryopreservation and to increase their representation in public culture collections.

Blanket peat catchments are important biodiversity refugia and are increasingly recognised for their role in regional carbon and water balances. A key pressure on these catchments is forest clearfelling which increases stream phosphorus potentially leading to eutrophication. However, these unique systems are underrepresented in the development of bioassessment monitoring programmes and so are at risk to impacts. In this study, a multiple before-after-control-impact (MBACI) study was designed in three neighbouring peatland catchments and provided a unique opportunity to assess the impact of forest clearfelling events on macroinvertebrate and phytobenthic assemblages. Statistical analysis revealed substantial differences in the macroinvertebrate assemblages after clearfelling with higher abundances of chironomids. Macroinvertebrate derived indices EPT, diversity and species richness were significantly reduced. This was accompanied by a shift in functional feeding group representation away from shredders and collector–filterers to a dominance of collector–gatherers after clearfelling. In contrast, forest clearfelling did not significantly impact the diatom assemblages and diatom derived indices remained static for the duration of the study period.

Biomonitoring is central to the European Union's Water Framework Directive (WFD) and to the French water and aquatic environmental law, but most diatom indices do not separate different anthropogenic impacts. To address this gap, the effect of water chemistry on diatom ecological guilds and life forms was assessed in order to indicate stream perturbations. Generalised additive models (GAMs) were built on a large-scale data set of 1571 samples from the French monitoring network. The relationships between diatom ecological guild and life form metrics were investigated by Principal components analysis and the results predicted by GAMs. The models characterised eight chemical parameters that modified adaptive strategies (ecological guilds) and growth morphology (life forms). Total phosphorus, conductivity, nitrate and pH are the main influencing factors, followed by temperature, dissolved oxygen and organic matter. The findings confirm three groups of diatoms with different adaptive strategies: 1 - fast moving species, 2 - species growing close to the substrate and 3 - species extending to the surface layers of the biofilm. Thirteen diatom metrics displayed a variety of responses to different ranges of the eight chemical parameters. These metrics could be used to help to identify and quantify which chemical alterations are caused by polluted effluents in rivers.

Benthic diatoms are widely used in Europe and worldwide to access ecological status of running waters. One of key goals of Water Framework Directive is to classify rivers and streams using biological quality elements and type specific reference conditions. According to system B which incorporates additional abiotic descriptors, there are 24 water types in Croatia. For biological analyses 92 rivers and streams with 140 sampling points were chosen and sampled for benthic diatoms and water chemistry simultaneously. Self organizing map (SOM) analysis was used to define biotypes from species composition and abundance of benthic diatoms. Grouping of samples in SOM resulted in 10 distinctive groups. Based on their geographical position and site characteristics, groups represent sites with similar properties (as waterbed, catchment size, altitude, size of stream) belonging to different ecoregions in Croatia. Analysis of variance revealed statistically significant differences (p

The aim of this study was to propose an index [Index of Biotic Integrity for the Rio de la Plata (IBIRP)] formulated from a minimum of information-rich metrics related to biological integrity for evaluation of the coastal freshwater tidal zone of the Rio de la Plata estuary. A total of 23 sites were selected along 170 km of shoreline (34°27′10″ S, 58°30′21″ W and 35°23′28″ S, 57°08′50″ W), being influenced by different land uses. We explored 36 biotic descriptors (designated candidate metrics), each of which is considered as an environmental indicator, and selected four metrics: two related to phytoplankton assemblage (planktonic cyanobacterial density and phytoplanktonic total density) and two linked to benthic assemblages, the diatoms (percent most tolerant taxa), and the invertebrates (percent Tanaidacea). The metrics that were chosen to integrate the IBIRP provide valuable information about the biotic integrity both in terms of time and space. The multimetric index can assume values between 0 (very bad status) and 10 (very good status). The IBIRP correlated significantly with the second (p < 0.001) and fourth (p < 0.01) factors of the factor analysis—those being related to variables indicative of eutrophication and organic pollution. This index constitutes an approach that is capable of reflecting the anthropogenic impacts produced along the coast of the Rio de la Plata, with the inherent flexibility of being subject to modification and ultimate validation for estuaries of similar characteristics.

Long-term interannual variations in the mean microphytobenthos chlorophyll a (chl a) of the Ems estuary were investigated. Concentrations in the 1990s were on average 1.5 times higher than during the period from 1976 to 1978, but a trend in chl a over the entire period (1976 to 1999) was not found. In agreement with findings from the late 1970s, the mean chl a concentrations over the post 1990 period correlated significantly with the station elevation related exposure time. Over the entire 1976 to 1999 study period, the estuary mean annual chl a concen- trations correlated strongly and significantly with the mean annual air temperature. Although the range of the variation in the mean annual air temperature of the studied years was only 7.5 to 10.2°C, it surprisingly corresponded with a ca. 2.5-fold variation in the mean annual microphyto- benthos chl a. In addition to chl a, mean monthly C:chl a ratios from 1976 to 1977 also correlated positively with changes in temperature. Microphytobenthos carbon biomass (chl a × (C:chl a)) may, therefore, respond even stronger to air temperature than chl a does. The correlations are most likely a combination of direct temperature effects on microphytobenthos and stronger, prob- ably complex, indirect temperature effects on the seasonal development and standing stock of young and adult grazers (bivalves) and their carnivores like the brown shrimp Crangon crangon.

It has been proved that littoral diatoms provide a useful marker for detecting localised changes resulting from uneven anthropogenic disturbances or intermittent releases of sewage along the shorelines of lakes. This study tested the spatial resolution at which this general observation occurs, by selecting areas with different anthropogenic pressures (urbanization) along a latitudinal gradient in Lake Garda, a deep and wide peri-Alpine lake. The sampling design aimed to detect differences in diatom distribution in terms of species diversity, quality indices, proportion of Red List taxa, assemblages, and individual species. Because the extent to which diatom assemblages respond to these gradients was unknown, we used assemblage metrics of different sensitivities. Results showed that the most important environmental factor was the latitudinal gradient, which was revealed by almost all the assemblage metrics. This dominant trend was explained by two co-occurring environmental gradients: concentration of nutrients and thermal gradient. The importance of different levels of urbanization was unevenly partitioned among locations and latitudes because of the different intensities of urbanization pressure. Only the species Brachysira neglectissima, the quality index (Trophic Index), and to a lesser extent, the metric at assemblage level revealed significant effects. Overall, this study comes to two main conclusions: (1) different metrics are needed to detect the multifaceted effects of anthropogenic disturbances, which by their very nature are unevenly distributed and of different intensities, and therefore affect assemblages to different degrees; (2) for any monitoring program in this lake to be effective, the various gradients revealed in this work should be taken into account. Failing to include these sources of variability might lessen the benefits of monitoring.

Freshwater diatoms are considered to be reliable indicators of the trophic status of rivers and lakes. In the past 30 years, a number of indicator indices have been developed and used for the assessment of trophic conditions all over Europe. It is however still not clear whether the ecologic signature of diatoms differs between these indicator indices. The present study assessed a large number of published European indices on the response of freshwater diatoms to trophic conditions by evaluating the consistency in the use of taxa and their trophic score from seven European indicator indices. The STAR (Standardisations of River Classifications) diatom database, a large set of samples from European running waters, was used to test the application of trophic classifications in water quality assessment. The analysis of taxa in common within the trophic indices showed that there are considerable differences between the indices, for example in the score of trophic values. There was more agreement in classification of taxa within the oligotrophic and the hypertrophic preferences than within the mesotrophic range. Based on these results, a list of diatom taxa, that are consistently used in different trophic indices, was composed. It included 159 reliable taxa that are not sensitive to regional setting, water type and taxonomic uncertainty. The list was further accompanied by a description of the taxa's trophic preferences. The large deviation in trophic scores for a number of diatom taxa could most probably be explained by taxonomic uncertainties. Application of these taxa for trophic assessment was questionable. The test set of the 359 STAR samples showed that differences between the trophic indices also lead to a significant variation in the water quality assessment results. Although trophic indices provide an excellent biomonitoring tool, they should be applied with caution, considering the recommendations provided in this paper.

Diatoms are highly abundant unicellular algae that often dominate pelagic as well as benthic primary production in the oceans and inland waters. Being strictly dependent on silica to build their biomineralized cell walls, marine diatoms precipitate 240 × 1012 mol Si per year, which makes them the major sink in the global Si cycle. Dissolved silicic acid (dSi) availability frequently limits diatom productivity and influences species composition of communities. We show that benthic diatoms selectively perceive and behaviourally react to gradients of dSi. Cell speed increases under dSi-limited conditions in a chemokinetic response and, if gradients of this resource are present, increased directionality of cell movement promotes chemotaxis. The ability to exploit local and short-lived dSi hotspots using a specific search behaviour likely contributes to micro-scale patch dynamics in biofilm communities. On a global scale this behaviour might affect sediment–water dSi fluxes and biogeochemical cycling., Diatoms often dominate production in aquatic communities, but the amount of available dissolved silicic acid (dSi) limits their growth. Here, Bondoc et al., show that diatoms perceive gradients in dSi, and can increase the encounter with this resource by chemotaxis toward high concentrations under resource-limited conditions.

International audience; Species sensitivity distributions (SSDs) are an important predictive tool in risk assessment. Usually, literature data are used to build SSDs that are mostly based on planktonic species. But, to get adequate protective thresholds for environmental communities, one could argue that SSD should be built on ecotoxicological data obtained from species found in the ecosystem that should be protected. This is particularly true when benthic algae are of concern. Due to the lack of literature data, building SSD on benthic microalgae is difficult. This paper aims in comparing SSDs, and thus protective thresholds (hazardous concentration that affects 5 % of the species of a community, HC5), built on ecotoxicological data obtained (1) from literature and (2) with specific bioassays on benthic diatoms from a lake. Thresholds were derived for protection against four herbicides separately and for a mixture of them. Sensitivity data obtained from literature were statistically lower than the specific data for all herbicides: Species tested in the literature were usually more sensitive (mainly chlorophytes), leading to more protective lower HC5. The HC5 thresholds (literature or specific) derived for protection against the mixture were also compared to the observed sensitivity of an assemblage of benthic diatom species exposed to an increasing range of herbicide mixture concentrations. We observed that one species within the assemblage (Fragilaria rumpens) was affected at a concentration below both the literature and the specific HC5 thresholds.

The paper presents the description of Seminavis atlantica Garcia, a psammic marine diatom from dissipative sandy beaches from southern Brazil. It is characterized by its convex linear dorsal margin (37 to 50% of its length is in a straight line), linear ventral margin and raphe located very close to the ventral margin. Its morphology is compared to similar species such as Amphora clevei Grunow, Amphora angusta (Greg.) Cleve var. orientalis Allem, Amphora ventricosa Gregory and Amphora eulesteinii Grunow. O trabalho apresenta a descrição de Seminavis atlantica Garcia, uma diatomácea psâmica marinha de praias arenosas dissipativas do Sul do Brasil. Esta é caracterizada por sua margem dorsal linear (37 a 50% do seu comprimento apresenta-se em linha reta), margem ventral linear, e rafe localizada muito próxima da margem ventral. Sua morfologia é comparada a espécies similares como Amphora clevei Grunow, Amphora angusta (Greg.) Cleve var. orientalis Allem, Amphora ventricosa Gregory, e Amphora eulesteinii Grunow.

9 páginas, 5 figuras, 1 tabla, Cocconeis neothumensis, a benthic diatom living as epiphyte on Posidonia oceanica leaves, was hypothesised to synthesize secondary metabolites inducing apoptosis in the androgenic gland of the protandric shrimp Hippolyte inermis. The optimization of C. neothumensis cultures is a primary aim in order to identify and characterise the active compounds produced by this diatom. Light intensity and concentration of nutrients, such as silicates and selenium, are of major importance in determining the growth rate of diatoms and the maximum produced biomass. Thus, we evaluated the growth performances of C. neothumensis cultures at different light intensities, corresponding to those recorded in Posidonia oceanica meadows in April, when the induction of sexual reversal in Hippolyte inermis occurs; the growth performances were also determined in relation to different selenium and silicate availability in the culture medium and the possible interactions between these two micronutrients were evaluated. Two methods of cultivations were compared: batch cultures in Petri dishes and cultures in a bioreactor with a continuous medium flow in the system. C. neothumensis showed a faster growth at low light intensities, although with a good acclimation capacity in the range from 60 to 140 μmol photons m−2 s −1 . The presence of selenium in the medium improved both the exponential growth rate and the maximum cell density. The same results were evidenced for a silicate concentration double that in Guillard f/2 medium. On the other hand, a simultaneous increase of silicate concentration and the presence of selenium led to a loss of the positive effects detected with single nutrients. This result suggests either a possible antagonism in selenium and silicate uptake or a negative interaction between these two micronutrients in Cocconeis. The yields of the two tested cultivation methods calculated in terms of diethyl ether extract dry weight per unit of substrate area were highest for the bioreactor., This work was fully funded by the E.U. in the frame of the E.U. project PHARMAPOX (NEST STREP Adventure 4800).

Aquatic ecosystem biomonitoring tools are largely lacking for many developing countries, resulting in adoption of tools developed from other countries/regions. In many instances, however, the applicability of adopted tools to the new system has not been explicitly evaluated. The objective of this study was to test the applicability of foreign diatom-based water quality assessment indices to urban streams in Zimbabwe, with the view of stimulating research to develop improved approaches for assessing ecological integrity of lotic systems in the country. The study evaluated the relationship between measured water quality variables and diatom index scores. The study found a high degree of concordance between water quality variables and diatom index scores. Thus, the indices proved useful in providing an indication of the quality of the investigated waters. This could be attributed to the occurrence of many widely distributed diatom species that have similar environmental tolerances to those recorded elsewhere. Diatom indices which exhibited consistent classifications and strong correlations with water quality variables such as Trophic Index, Saprobic Index, Pampean Diatom Index, Biological Index of Water Quality and Leclercq Index are recommended for use in the country. However, ecological requirements of some diatom species from Zimbabwe need to be clarified and incorporated in a diatom-based water quality assessment protocol unique to the country. Keywords : biological monitoring, pollution, benthic diatoms, biotic indices

Stable carbon and nitrogen isotopic composition (delta C-13 and delta N-15) of benthic organisms was investigated to understand the effects of a gregarious tubicolous amphipod species (Haploops nirae) on benthic food web structures and test whether drastic changes in species composition cause changes in food web structure. The habitat engineered by this species was sampled and compared with the adjacent uncolonized Amphiura filiformis muddy habitat in winter and summer. The isotopic signatures of macrofaunal and megafaunal species associated with both habitats were analysed along with potential food sources at each sampling period. Similar food web structures for each habitat (and each season), with high delta N-15 ranges spanning over 3 trophic levels, were reported although omnivory was less frequent in the H. nirae habitat. The amphipod H. nirae appears to play a baseline role, with the lowest delta N-15 values and delta C-13 values indicating that it primarily feeds on phytoplankton. Bayesian mixing models were used to estimate the contributions of potential food sources to the diet of the species accounting for most of the biomass in each habitat and showed that the epibionts covering tube mats are a key contribution to the food webs of both habitats. Identified as benthic diatoms, they may minimize interspecific food competition between dominant suspension feeders such as Polititapes virgineus or H. nirae within a habitat. This finding highlights the contribution of microphytobenthic producers to subtidal (similar to 30 m deep) muddy habitat food webs, suggesting that the mucopolysaccharides composing the H. nirae tubes support the growth of a heterotrophic diatom population. As an engineer species, H. nirae acts as a facilitator for diatoms which ultimately sustain the secondary production of the H. nirae habitat as well as the immediate surrounding habitats.

Relationships between bacteria, microphytobenthos and extracellular polymeric substances (EPS) that make up microbial biofilms over bare mudflats were investigated at an hourly frequency during two 14-day spring– neap cycles in winter and summer 2008. Bacterial abundance and total chl a concentration were lower in summer (0.78 × 108 ± SD 0.39 × 108 cell.m−2 and 59.0 ± SD 10.42 mgchla.m−2) than in winter (3.7 × 108 ± SD 1.9 × 108 cell.m−2 and 106.64 ± SD 11.29 mgchla.m−2), coinciding with a high abundance of the gastropod Peringia ulvae in summer, which subsequently impacted 1st-cm chl a concentration by intense grazing. Bound and colloidal EPS carbohydrate temporal patterns were similar in winter (5.71 ± SD 3.95 and 4.67 ± SD 3.45 μg.g−1, respectively) butwere different in summer (14.9±SD 4.05 and 5.60±SD 4.50 μg.g−1, respectively). Carbohydrate colloidal EPS appeared to be related to light and salinity, while 1st-mm chl a concentration was negatively affected by strong salinities and predation pressure by P. ulvae. The fluctuations of colloidal carbohydrates were remarkably similar in the two seasons with peaks just after spring tideswhen the highest irradiance was received by microphytobenthic cells. Apparently, colloidal EPS carbohydrates can protect cells against the high salinity values ranging from 32.3 to 50.4 PSU. The presence of bound EPS carbohydrates may be linked to sediment colonization and resistance of biofilm activity. Proteins in EPS were absent in winter and represented a small proportion in summer (10%), but they appeared to be a good indicator of potential synergistic effects between MPB and bacteria in summer. Conversely, bound EPS carbohydrates reached high levels in winter, while the number of bacteria decreased simultaneously, suggesting a negative effect on bacterial growth in the absence of proteins in EPS. There was a lower proportion (31%) of low molecular weight EPS in summer than in winter (83%), possibly in relation to desiccation.

International audience; Tools that may be used to characterize the state of aquatic ecosystems and the impacts associated to pesticides are currently requested for the monitoring of ecosystems. Chemical analysis alone is not sufficient for such purposes and biomonitoring is essential. Many bioindicators based on diatoms are commonly used to assess the quality of aquatic environments but have not been developed to specifically address the impacts of pesticides. It is therefore crucial to develop dedicated tools. Our research aimed at performing a field study (analysis of monitoring network data) in order to evaluate the responses of different metrics towards pesticide pressure. For diatom communities, toxic pressure associated to pesticides, especially herbicides, had a weak effect on species composition and on the various tested metrics. Nutrient and organic matter concentrations (and also typology) are the main influencing factors. When trophic and saprobic levels are controlled, it is possible to identify the effects of herbicides on some metrics. The only responding metric is the abundance of the "high profile" guild, which corresponds to taxa presenting an important contact surface with water flow. Its abundance decreases when herbicide toxic pressure increases. It could therefore be used to assess the impact of herbicides on diatom communities, but in a framework where confounding factors variability (e.g., nutrients, organic matter, river order) is reduced.

Key-words: Bacillariophyta, biomonitoring, check-list, metric, river Diatoms are a very diverse group of microalgae that encompass about 100000 taxa. This makes an excellent bioindicator especially of rivers. The majority of biotic indices based on diatoms are constructed on species pollution-sensitivities. Nevertheless, recent studies showed the interest to use complementary metrics for biomonitoring: life-forms, cell-sizes and ecological guilds. Unfortunately, taxa memberships to such metrics are scattered in numerous floras and papers. Therefore, studies using such metrics often referred to grey literature or home-made checklists. The objective of this paper is to make available to the scientific community an important check-list of taxa frequently observed in European rivers with their memberships to these metrics. After defining these metrics, 1115 taxa were codified using Biofresh and Omnidia codes in an Excel file. Metrics memberships were then explored in a taxonomical framework. It clearly appears that metrics memberships are determined by taxonomy. Lifeforms and cell sizes taxa memberships and their study in the framework of evolutionary history of diatoms is a field that is worth studying for a better understanding of diatoms ecology. Such inputs should be beneficial for the future improvement of diatom-based monitoring tools.

In order to characterize and analyze the distribution of species of the genus Navicula sensu stricto in the Lerma River and its tributaries, biannual samplings (wet and dry seasons) for the period 2003 to 2005 were made at eleven locations in the Upper Lerma basin, central-western Mexico. Twenty-one species of Navicula Bory, were identified, of which fourteen represent new records for Mexico and five were new to the study area. Most of the species of Navicula s. str. observed in the study area are tolerant to high contents of organic matter, which is incorporated into the aquatic ecosystems as a product of agricultural and industrial activities and from deficiently treated municipal discharges of cities and towns present in the study area at the sites most affected by these activities. Cosmopolitan species with broad tolerances to organic pollution and eutrophic conditions, such as Navicula antonii, N. germainii, N. perminuta, N. rostellata and N. erifuga were present throughout the year. N. tripunctata and N. veneta, widely reported as tolerant to pollution from industrial activities in other regions of the world, were present at the sites most affected by these activities. Fil: Segura García, Virginia. Universidad Michoacana de San Nicolás de Hidalgo; México Fil: Israde Alcántara, Isabel. Universidad Michoacana de San Nicolás de Hidalgo; México Fil: Maidana, Nora Irene. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Biodiversidad y Biología Experimental; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina

International audience; Four dominant nematode species and various copepods from an intertidal mudflat in Marennes-Oléron Bay were analyzed for δ13C and δ15N ratios together with their potential food source, the microphytobenthos. It was shown that microphytobenthic C is passed to nematodes either by grazing or predation on herbivorous meiofauna by other nematodes. Diatoms of different sizes exhibited different 13C content, which can be reflected in herbivorous meiofauna, such as the nematodes Daptonema oxycerca and Metachromadora remanei and the bulk of copepods, indicating they can select different sizes of diatoms. Results confirm the need to analyze meiofauna feeding habits at the species or genera level since the δ15N and δ13C signatures differed substantially among meiofaunal species

13 páginas, 3 figuras, 3 tablas., Bio-optical characteristics and photosynthetic performance of five strains of benthic diatoms belonging to three different species (Nitzschia thermalis Kützing var. minor Hilse sensu Podzorski, Nitzschia laevis Hust and Navicula incerta Grunow) were examined. The effects of treatments with monochromatic blue light (BL) were also determined. The values of photosynthesis rate at saturating photon fluence rate (PFR) (Pmax) and ascending initial slope of the P-PFR curves (α) ranged from 0.22 to 3.58 μmol O2 per mg Chl a min−1 and from 0.012 to 0.169 μmol O2 per mg Chl a (μmol photons m−2 s−1)−1 respectively. Onset of light saturation parameter (Ek) ranged from 43 to 12 μmol photons m−2 s−1. These values were comparable to those reported from measurements performed with sub-tidal benthic communities. In vivo effective optical cross-section of Chl a (a∗ values) was correlated to average cell surface area. Interestingly, a∗ and α were also negatively correlated, probably indicating that a higher pigment packaging affects negatively to α. The acclimation of the five strains to monochromatic BL for 2 weeks produced a reduction of Pmax and α although the effective quantum yield of photosystem II (ΔF/Fm′) was not affected. In addition to these changes, chlorophyll a increased and a∗ decreased in the five strains. Therefore, it was concluded that the reduction of a∗ could contribute to the changes in the photosynthetic performance in BL., This work was funded by the Ministerio Español de Ciencia y Tecnología (Project AGL 2001-1888 C03-02), Instituto Español de Oceanografía (Project ECOFITO 820000000), Centro de Investigación y de Educación Superior de Ensenada (CICESE, Project 6554) and Consejo Nacional de Ciencia y Tecnología de México (CONAC y T, Project 33016B). JM Mercado was supported by a Ramón y Cajal contract (Ministerio Español de Ciencia y Tecnología). JG Correa-Reyes was supported by Consejo Nacional de Ciencia y Tecnología of México. FL Figueroa’s stay at CICESE (Ensenada, México) was supported by Agencia Española de Cooperación Internacional (AECI).

The first floristic inventory of benthic diatoms is provided for the Bahía Magdalena- Bahía Almejas lagoon system. Samplings were carried out during November of 1999. The oxydized samples were mounted permanently. Eighty six diatom taxa were identified, out of which 59 are new records for the Bahía Magdalena area, and 12 taxa are new for the Baja California peninsula. Taxa recorded previously as rare in other substrata are common or abundant on the epiphytic macroalgae of mangrove prop roots. Other species are mainly epipelic forms, while 24 are commonly found as tychoplankton in the area. Certain taxa appear to be characteristic of mangrove systems in general. Rev. Biol. Trop. 54(2): 287-297. Epub 2006 Jun 01.Se presenta el primer inventario florístico de diatomeas bénticas para el Sistema Lagunar Bahía Magdalena-Bahía Almejas. Se hicieron muestreos en noviembre de 1999. En las muestras oxidadas y montadas permanentemente, se identificaron 86 táxones, de los cuales 59 son nuevos registros para el área de Bahía Magdalena, y 12 son nuevos para la península de Baja California. Táxones previamente registrados como escasos en otros sustratos son comunes o abundantes sobre macroalgas epífitas de raíces primarias de mangle. Otras species son principalmente formas epipélicas, mientras que 24 son constituyentes comunes del ticoplancton del área. Ciertos táxones parecen ser característicos de sistemas de manglar en general.

On the basis of LM and SEM observations as well as of environmental claw, three species of the predominantly-acidophilous diatom genus Eunotia (E. cisalpina, E. fallacoides, E. insubrica) are described as new to science, and characterized from the ecological point of view. The three new species were not distinguished from other similar ones in the past hut can be identified at the LM by careful observation of diacritical characters such as valve outline (in particular the shape of the endings). dimensions, and stria density. One of the three new species (E. insubrica) presents a very peculiar ultrastructural feature. i.e. well-developed pseudoseptum-like structures at the apices. The three new species were pointed out by detailed analyses of materials sampled in the south-eastern Alps. It is put forward that diatom investigations adopting high-resolution taxonomy are particularly opportune in habitats such as those colonized by the three new species. The three new species were found to be characteristic of low-alkalinity, naturally slightly-acidic, strictly-oligotrophic, high-mountain springs and lakes. Efficient desiccation-resistance strategies, apparently widespread in the genus Eunotia, might be supposed also far the three new species, that were found to thrive also in low-discharge springs and in the shallow littoral waters of lakes showing seasonal or exploitation-enhanced water-level fluctuations. The diatom assemblages of these aquatic habitats possess a high species richness, and include many rare and Red List species, and are thus of prominent importance for diatom biodiversity, conservation. These relatively-pristine aquatic habitats on siliceous bedrocks are however highly sensitive, and endangered because of diffuse pollution. Climate- and environmental-change driven increased release of organic acids, and contamination by airborne inorganic acids and nutrients are all potential threats to these still high-integrity but fragile systems. The detailed characterization of their diatom assemblages, that are excellent monitors of acid-base and nutrient status is thus of the foremost importance. In particular the distinction between naturally-acidic and acidified systems is a relevant topic that might benefit from detailed knowledge of taxonomy and ecology of both communities and indicative taxa of the diatom assemblages.