1. The upregulated expression of RFC4 and GMPS mediated by DNA copy number alteration is associated with the early diagnosis and immune escape of ESCC based on a bioinformatic analysis
- Author
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Yan Mei, Li-Xia Peng, Chao-Nan Qian, Jing Wang, Tie-Jun Huang, Fei-Fei Luo, and Bi-Jun Huang
- Subjects
Male ,RFC4 and GMPS ,Aging ,RFC4 ,DNA Copy Number Variations ,Esophageal Neoplasms ,Guanosine Monophosphate ,Datasets as Topic ,Biology ,DNA copy number ,Immune system ,Replication factor C ,tumor-infiltrating immune cells ,Downregulation and upregulation ,Gene expression ,Biomarkers, Tumor ,Carcinoma ,medicine ,Humans ,Replication Protein C ,neoplasms ,Gene Expression Profiling ,ESCC ,Computational Biology ,DNA, Neoplasm ,Cell Biology ,Middle Aged ,Thionucleotides ,Esophageal cancer ,Prognosis ,medicine.disease ,digestive system diseases ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,ROC Curve ,Cancer research ,Female ,Esophageal Squamous Cell Carcinoma ,NODAL ,Research Paper ,early diagnosis - Abstract
Esophageal squamous cell carcinoma (ESCC) is a malignant tumor that commonly occurs worldwide. Usually, Asia, especially China, has a high incidence of esophageal cancer. ESCC often has a poor outcome because of a late diagnosis and lack of effective treatments. To build foundations for the early diagnosis and treatment of ESCC, we used the gene expression datasets GSE20347 and GSE17351 from the GEO database and a private dataset to uncover differentially expressed genes (DEGs) and key genes in ESCC. Notably, we found that replication factor C subunit 4 (RFC4) and guanine monophosphate synthase (GMPS) were upregulated but have been rarely studied in ESCC. In particular, to the best of our knowledge, our study is the first to explore GMPS and ESCC. Furthermore, we found that high levels of RFC4 and GMPS expression may result from an increase in DNA copy number alterations. Furthermore, RFC4 and GMPS were both upregulated in the early stage and early nodal metastases of esophageal carcinoma. The expression of RFC4 was strongly correlated with GMPS. In addition, we explored the relationship between RFC4 and GMPS expression and tumor-infiltrating immune cells (TILs) in esophageal carcinoma. The results showed that the levels of RFC4 and GMPS increased with a decrease in some tumor-infiltrating cells. Upregulated RFC4 and GMPS with high TILs indicate a worse prognosis. In summary, our study shows that RFC4 and GMPS have potential as biomarkers for the early diagnosis of ESCC and may played a crucial role in the process of tumor immunity in ESCC.
- Published
- 2021
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