1. Rapid detection of H146-like goose calicivirus using a TaqMan-based real-time PCR assay
- Author
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Lin Su, Min Zheng, Dandan Jiang, Shizhong Zhang, Shao Wang, Xiuqin Chen, Shilong Chen, and Chen Shaoying
- Subjects
viruses ,Genetics and Molecular Biology ,Biology ,Real-Time Polymerase Chain Reaction ,Sensitivity and Specificity ,Virus ,law.invention ,03 medical and health sciences ,Plasmid ,law ,Geese ,TaqMan ,Animals ,Gene ,Poultry Diseases ,Caliciviridae Infections ,030304 developmental biology ,virus detection ,lcsh:SF1-1100 ,0303 health sciences ,0402 animal and dairy science ,Calicivirus ,Reproducibility of Results ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,040201 dairy & animal science ,Virology ,Caliciviridae ,TaqMan probe ,Real-time polymerase chain reaction ,H146-like ,Recombinant DNA ,Animal Science and Zoology ,lcsh:Animal culture ,goose calicivirus ,real-time PCR - Abstract
H146-like goose-origin calicivirus (H146-like GCV) is a novel Caliciviridae family member in the Sanovirus genus that was recently discovered and proposed to cause runting-stunting syndrome and urate deposition in geese. At present, however, there is a lack of epidemiological information pertaining to the dynamics and distribution of H146-like GCV. The development of novel molecular diagnostic approaches capable of rapidly and accurately detecting this virus would support the strengthening, the prevention, and control of H146-like GCV infection. In the present study, we therefore used a TaqMan probe and primers specific for the viral nonstructural (NS) gene to develop a highly sensitive and specific PCR assay capable of detecting this H146-like GCV. The assay reproducibly detected 5.07 × 102 copies of a recombinant DNA plasmid containing the NS gene, with a dynamic range of 8 orders of magnitude (102–109 copies). Importantly, no cross-reactivity was observed with common viruses that affected waterfowl, and when we used this assay to evaluate clinical samples, we found it to be more sensitive and faster than traditional PCR. In summary, herein, we developed a novel TaqMan-based real-time PCR approach that could reliably detect and diagnose H146-like GCV. This tool will allow for the real-time diagnosis of H146-like GCV infections, enabling researchers to better understand the epidemiology and clinical presentation of this disease.
- Published
- 2021