1. Multidimensional pooled shRNA screens in human THP-1 cells identify candidate modulators of macrophage polarization
- Author
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Tanushree Phadke, Marie-Gabrielle Ludwig, Barna D. Fodor, Florian Nigsch, John S. Reece-Hoyes, Anke Thiemeyer, Ieuan Clay, Caroline Gubser Keller, Birgit Baumgarten, Dirk Schübeler, Cyril Allard, Gregory R. Hoffman, Tewis Bouwmeester, Mathias Frederiksen, Romain Gambert, Ewa Surdziel, and Klaus Seuwen
- Subjects
0301 basic medicine ,Candidate gene ,Genetic Screens ,Gene Identification and Analysis ,Gene Expression ,lcsh:Medicine ,Suppressor Genes ,Monocytes ,Small hairpin RNA ,White Blood Cells ,Spectrum Analysis Techniques ,Animal Cells ,Medicine and Health Sciences ,Macrophage ,RNA, Small Interfering ,lcsh:Science ,Tissue homeostasis ,Genetics ,Multidisciplinary ,Reverse Transcriptase Polymerase Chain Reaction ,Cell Polarity ,Flow Cytometry ,Chromatin ,Spectrophotometry ,Cytophotometry ,Cellular Types ,Research Article ,Immune Cells ,Immunology ,Macrophage polarization ,Computational biology ,Library Screening ,Biology ,Real-Time Polymerase Chain Reaction ,Research and Analysis Methods ,Models, Biological ,03 medical and health sciences ,Gene Types ,Cell Line, Tumor ,Humans ,Gene Regulation ,Molecular Biology Techniques ,Molecular Biology ,Molecular Biology Assays and Analysis Techniques ,Innate immune system ,Blood Cells ,Macrophages ,lcsh:R ,Biology and Life Sciences ,Cell Biology ,030104 developmental biology ,Regulator Genes ,lcsh:Q ,Genetic screen - Abstract
Macrophages are key cell types of the innate immune system regulating host defense, inflammation, tissue homeostasis and cancer. Within this functional spectrum diverse and often opposing phenotypes are displayed which are dictated by environmental clues and depend on highly plastic transcriptional programs. Among these the 'classical' (M1) and 'alternative' (M2) macrophage polarization phenotypes are the best characterized. Understanding macrophage polarization in humans may reveal novel therapeutic intervention possibilities for chronic inflammation, wound healing and cancer. Systematic loss of function screening in human primary macrophages is limited due to lack of robust gene delivery methods and limited sample availability. To overcome these hurdles we developed cell-autonomous assays using the THP-1 cell line allowing genetic screens for human macrophage phenotypes. We screened 648 chromatin and signaling regulators with a pooled shRNA library for M1 and M2 polarization modulators. Validation experiments confirmed the primary screening results and identified OGT (O-linked N-acetylglucosamine (GlcNAc) transferase) as a novel mediator of M2 polarization in human macrophages. Our approach offers a possible avenue to utilize comprehensive genetic tools to identify novel candidate genes regulating macrophage polarization in humans.
- Published
- 2017