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Robust assessments of taxonomic and functional diversity are essential components of research programmes aimed at understanding current biodiversity patterns and forecasting trajectories of ecological changes. Yet, evaluating marine biodiversity along its dimensions is challenging and dependent on the power and accuracy of the available data collection methods. Here we combine three traditional survey methodologies (underwater visual census strip transects [UVCt], baited underwater videos [BUV] and small-scale fishery catches [SSFc]), and one novel molecular technique (environmental DNA metabarcoding [eDNA]-12S rRNA and cytochrome oxidase subunit 1 [COI]) to investigate their efficiency and complementarity in assessing fish diversity. We analysed 1,716 multimethod replicates at a basin scale to measure the taxonomic and functional diversity of Mediterranean fish assemblages. Taxonomic identities were investigated at species, genus and family levels. Functional identities were assessed using combinations of morphological, behavioural and trophic traits. We show that: (a) SSFc provided the higher taxonomic diversity estimates followed by eDNA, and then UVCt and BUV; (b) eDNA was the only method able to gather the whole spectrum of considered functional traits, showing the most functionally diversified and least redundant fish assemblages; and (c) the effectiveness of eDNA in describing functional structure reflected its lack of selectivity towards any considered functional trait. Our findings suggest that the reach of eDNA analysis stretches beyond taxon detection efficiency and provides new insights into the potential of metabarcoding in ecological studies.

The early origin and evolutionary radiation of graptolites (Hemichordata:Pterobranchia) is a story told almost entirely in the fossil record, but for four extant species of the genus Rhabdopleura Allman, 1869. Here we report the discovery of a fifth species, Rhabdopleura recondita, sp. nov., at a depth range of 2–70m from the Adriatic and Ionian Seas, always associated with bryozoans in coralligenous habitats. This is the first pterobranch record in Italian waters, and the second in the Mediterranean Sea. The new species is characterised by: (1) tubaria with smooth creeping tubes adherent to the inside of empty bryozoan zooecia; (2) erect outer tubes with a graptolite, fusellar-like organisation; and (3) zooids that extend from a black stolon, which is free from the creeping tube. Each of the paired feeding arms has two rows of tentacles that do not extend to the arm tip. The distal ends of the arms, the collar and the cephalic shield are replete with black granules. Phylogenetic analyses of individual and concatenated gene sequences of mitochondrial 16S rDNA and nuclear 18S rDNA support the validity of R. recondita as a new species. Finally, we discuss the global biogeographic and habitat distributions of the extant Rhabdopleura representatives. http://zoobank.org/urn:lsid:zoobank.org:pub:82C6A51E-F8F4-44AF-AD8F-16873BE80D03

Molecular analyses have led to an increased knowledge of the number and distribution of morphologically cryptic species in the world's oceans and, concomitantly, to the identification of non-indigenous species (NIS). Traditional taxonomy and accurate delimitation of species' life histories and autecology lag far behind, however, even for the most widely distributed taxa, such as the moon jellyfish Aurelia (Cnidaria, Scyphozoa) species complex. Here we analysed mitochondrial cytochrome c oxidase subunit I (COI) and nuclear 28S ribosomal RNA (28S) gene sequences to assign polyps, ephyrae, and medusae collected in the Mediterranean Sea to different phylogenetic species. We find evidence for three Aurelia species, none of which are referable to the type species of the genus, Aurelia aurita (Linnaeus, 1758), and describe the anatomical, morphometric, and developmental variation within and between them. We identify Aurelia coerulea von Lendenfeld, 1884 and Aurelia solida Browne, 1905 as established non-indigenous species in the Mediterranean Sea. We describe Aurelia relicta sp. nov., an endemic species currently unique to a population in the marine lake of Mljet (Croatia). These results demonstrate the usefulness of integrative approaches in resolving taxonomic uncertainty surrounding cryptic species complexes, identifying patterns of marine biodiversity, and recognizing non-indigenous species in marine ecosystems.

Connectivity between populations influences both their dynamics and the genetic structuring of species. In this study, we explored connectivity patterns of a marine species with long‐distance dispersal, the edible common sea urchin Paracentrotus lividus, focusing mainly on the Adriatic–Ionian basins (Central Mediterranean). We applied a multidisciplinary approach integrating population genomics, based on 1,122 single nucleotide polymorphisms (SNPs) obtained from 2b‐RAD in 275 samples, with Lagrangian simulations performed with a biophysical model of larval dispersal. We detected genetic homogeneity among eight population samples collected in the focal Adriatic–Ionian area, whereas weak but significant differentiation was found with respect to two samples from the Western Mediterranean (France and Tunisia). This result was not affected by the few putative outlier loci identified in our dataset. Lagrangian simulations found a significant potential for larval exchange among the eight Adriatic–Ionian locations, supporting the hypothesis of connectivity of P. lividus populations in this area. A peculiar pattern emerged from the comparison of our results with those obtained from published P. lividus cytochrome b (cytb) sequences, the latter revealing genetic differentiation in the same geographic area despite a smaller sample size and a lower power to detect differences. The comparison with studies conducted using nuclear markers on other species with similar pelagic larval durations in the same Adriatic–Ionian locations indicates species‐specific differences in genetic connectivity patterns and warns against generalizing single‐species results to the entire community of rocky shore habitats.

Submarine caves are environments of great ecological interest because of the occurrence of peculiar conditions, such as the attenuation of light and reduced water turnover, which can determine oligotrophic conditions from the entrance to the interior part of the cave. These environmental gradients may influence the distribution of the communities inhabiting submarine caves. In this study we investigated the meiofaunal community and nematode assemblages from the sediments inside and outside two submarine caves in Ustica Island Marine Protected Area (southwest Italy): Grotta Falconiera and Grotta dei Gamberi. Consistently with a general pattern of distribution reported by several studies on benthic organisms, our results showed a decrease in the abundance and changes in the taxa composition of the meiofaunal community along the exterior-interior axis of the caves, also highlighting the dissimilarity between the dark and semi-dark communities. We found a significant influence of the availability of organic matter (i.e. phytopigment concentrations) on the distribution and composition of both the meiofauna and the nematode community inside the caves. Different nematode assemblages characterized the inside and the outside of the two caves, with species occurring exclusively in the sediment of both caves, particularly in the dark portions, and completely absent in the external sediments. Environmental features of submarine caves may affect food resources inside the caves and consequently trophic nematode assemblages. Our results showed a difference in feeding strategies between nematodes inhabiting the caves and those living outside, suggesting that in the two caves investigated, bacteria might represent the most important food source for nematodes.

Genetic drift and non-random mating seldom influence species with large breeding populations and high dispersal potential, characterized by unstructured gene pool and panmixia at a scale lower than the minimum dispersal range of individuals. In the present study, a set of nine microsatellite markers was developed and used to investigate the spatio-temporal genetic patterns of the holoplanktonic jellyfish Pelagia noctiluca (Scyphozoa) in the Southern Tyrrhenian Sea. Homozygote excess was detected at eight loci, and individuals exhibited intra-population relatedness higher than expected by chance in at least three samples. This result was supported by the presence of siblings in at least 5 out 8 samples, 4 of which contained full-sib in addition to half-sib dyads. Having tested and ruled out alternative explanations as null alleles, our results suggest the influence of reproductive and behavioural features in shaping the genetic structure of P. noctiluca, as outcomes of population genetics analyses pointed out. Indeed, the genetic differentiation among populations was globally small but highlighted: a) a spatial genetic patchiness uncorrelated with distance between sampling locations, and b) a significant genetic heterogeneity between samples collected in the same locations in different years. Therefore, despite its extreme dispersal potential, P. noctiluca does not maintain a single homogenous population, but rather these jellyfish appear to have intra-bloom localized recruitment and/or individual cohesiveness, whereby siblings more likely swarm together as a single group and remain close after spawning events. These findings provide the first evidence of family structures and consequent genetic patchiness in a species with highly dispersive potential throughout its whole life cycle, contributing to understanding the patterns of dispersal and connectivity in marine environments.

A bloom of an unknown semaestome jellyfish species was recorded in the North Adriatic Sea from September 2013 to early 2014. Morphological analysis of several specimens showed distinct differences from other known semaestome species in the Mediterranean Sea and unquestionably identified them as belonging to a new pelagiid species within genus Pelagia. The new species is morphologically distinct from P. noctiluca, currently the only recognized valid species in the genus, and from other doubtful Pelagia species recorded from other areas of the world. Molecular analyses of mitochondrial cytochrome c oxidase subunit I (COI) and nuclear 28S ribosomal DNA genes corroborate its specific distinction from P. noctiluca and other pelagiid taxa, supporting the monophyly of Pelagiidae. Thus, we describe Pelagia benovici sp. nov. Piraino, Aglieri, Scorrano & Boero.