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Dar es Salaam is one of the most diverse cities in Tanzania in terms of its physical, social, economic, environmental and spatial features. This diversity has contributed to differences in built-up area, population density, as well as the pace of spatial development across different parts of the city. This study aims to examine the relationship between physical built-up area changes in Dar es Salaam, population density change and spatial development using remote sensing images and census data. The study finds that the city population has grown tremendously, with peri-urban wards in particular having experienced positive growth. Dar es Salam’s built-up area change and urban sprawl emerging at the city’s edges distinctly follows the pattern of demographic change. This is accompanied by substantial compact growth in the inner parts of the city. A number of factors such as transport, residential development, migration, high natural growth rates, public policies and land speculation are found to have contributed to these changes. Overall, the study aims to aid planning authorities in effectively responding to the rapid spatial development taking place in the city, for which a holistic approach that combines an understanding of physical and demographic changes is needed. By investigating the changing patterns in land use within this highly urbanizing city, it aims to generate insights into urban development control machineries and identify their underlying dynamics.

Objectives: The aim of this study was to investigate similarities and differences for 18 sports toward canoe/kayak in order to identify donorsport and/or multisports, based upon a systematic analysis of the task constraints per sport that are assumed to be either crucial or less important from the coaches' viewpoint. Design: Descriptive survey analysis. Methods: 891 certified coaches from 19 sports valued (0-10; not important at all-very important) 15 characteristics by a questionnaire (Flemish Sports Compass) within their sport. Unique sport-profiles (discriminant analysis - DA) were constructed for 19 sports based on these characteristics. Similarities and differences between canoe/kayak and the other 18 sports were analyzed by means of MANOVAs on anthropometric, physical and motor coordination characteristics. Results: Cross validated DA (rcan = 0.660, Wilks' Lambda = 0.564, p < 0.001) showed that 72.1% of the canoe/kayak coaches were correctly assigned to their sport. For canoe/kayak seven characteristics were valued crucial; dynamic balance (8.51 1.69), core stability (8.45 2.27), pulling power (8.12 +/- 1.68), speed (7.54 +/- 2.07), endurance (7.27 +/- 2.03), stature (6.43 +/- 1.41) and rhythm (6.01 +/- 3.01). Least important characteristics were: flexibility (6.16 +/- 1.75), agility (4.27 +/- 3.10), catching (3.90 +/- 3.22), climbing (2.45 +/- 3.05), jumping (1.81 +/- 2.11), throwing (1.60 +/- 2.24), hitting (.94 +/- 1.77) and kicking (.61 +/- 1.04). Conclusions: This novel approach to determine important characteristics per sport makes identifying similarities and differences between sports possible. Similarities might enlarge talent-pools for possible talent transfers. Differences can help identify sports based on complementary characteristics for the construction of broad motor development programs. From this viewpoint gymnastics can serve as potential donorsport (similarities) for canoe/kayak, while handball and tennis can subserve broad development for young canoe/kayak athletes. (C) 2020 Sports Medicine Australia. Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license.

Aim:The focus of the present study was the evaluation of the copper ions treatment on the viability of Mycobacterium avium subsp. paratuberculosis (MAP) and other bacterial communities in cow’s milk. Methods and Results:A copper ions treatment was evaluated in naturally contaminated cow’s milk to assay MAP load and/or viability; and relative abundance of other bacterial communities. In addition, physical-chemical analysis of the milk was also performed. All analyses were carried out before and after a copper ions treatment. After copper ions treatment, pH and copper concentration markedly increased in milk; the numbers of viable MAP significantly decreased. The relative abundance of the four target phyla decreased, with the phyla Bacteroidetes and Firmicutes surviving treatment in higher proportions (4% and 2.1 %, respectively). A progressively higher percentage of dead bacterial cells after 5 min and 20 min copper ions treatments was found (12% and 35%, respectively).Conclusion:With the exception of some MAP tolerant strains, we have once again demonstrated that copper ions have a significant inactivating effect on MAP as well as certain other bacterial communities found in naturally contaminated cow’s milk. Significance and Impact of Study:This study showed a significant inactivation of both MAP and other bacteria by copper ions in raw cow’s milk, information that could be useful as a tool for MAP control.

Background Globally, large numbers of children die shortly after birth and many of them within the first 4 wk of life. This study aimed to determine the trends, patterns and causes of neonatal mortality in hospitals in Tanzania during 2006–2015. Methods This retrospective study involved 35 hospitals. Mortality data were extracted from inpatient registers, death registers and International Classification of Diseases-10 report forms. Annual specific hospital-based neonatal mortality rates were calculated and discussed. Two periods of 2006–2010 and 2011–2015 were assessed separately to account for data availability and interventions. Results A total of 235 689 deaths were recorded and neonatal deaths accounted for 11.3% (n=26 630) of the deaths. The majority of neonatal deaths (87.5%) occurred in the first week of life. Overall hospital-based neonatal mortality rates increased from 2.6 in 2006 to 10.4 deaths per 1000 live births in 2015, with the early neonates contributing 90% to this rate constantly over time. The neonatal mortality rate was 3.7/1000 during 2006–2010 and 10.4/1000 during 2011–2015, both periods indicating a stagnant trend in the years between. The leading causes of early neonatal death were birth asphyxia (22.3%) and respiratory distress (20.8%), while those of late neonatal death were sepsis (29.1%) and respiratory distress (20.0%). Conclusion The majority of neonatal deaths in Tanzania occur among the early newborns and the trend over time indicates a slow improvement. Most neonatal deaths are preventable, hence there are opportunities to reduce mortality rates with improvements in service delivery during the first 7 d and maternal care.

In order to set a base line for the observation of planktonic community changes due to global change, protistan plankton sampling in combination with phycotoxin measurements and solid phase adsorption toxin tracking (SPATT) was performed in two bays of King George Island (KGI) in January 2013 and 2014. In addition, SPATT sampling was performed in Potter Cove during a one-year period from January 2014 until January 2015. Known toxigenic taxa were not firmly identified in plankton samples but there was microscopical evidence for background level presence of Dinophysis spp. in the area. This was consistent with environmental conditions during the sampling periods, especially strong mixing of the water column and low water temperatures that do not favor dinoflagellate proliferations. Due to the lack of significant abundance of thecate toxigenic dinoflagellate species in microplankton samples, no phycotoxins were found in net tow samples. In contrast, SPATT sampling revealed the presence of dissolved pectenotoxin-2 (PTX-2) and its hydrolyzed form PTX-2 seco acid in both bays and during the entire one-year sampling period. The presence of dissolved PTX in coastal waters of KGI is strong new evidence for the presence of PTX-producing species, i.e., dinoflagellates of the genus Dinophysis in the area. The presence of phycotoxins and their respective producers, even at the low background concentrations found in this study, may be the seed of possible proliferations of these species under changing environmental conditions. Furthermore, phycotoxins can be used as chemotaxonomic markers for a very specific group of plankton thus allowing to track the presence of this group over time., Este artículo tiene una corrección (ver "Documentos relacionados")., Facultad de Ciencias Naturales y Museo

Under the present changing climate conditions and the observed temperature increase, it is of high importance to understand its effects on aquatic microbial life, and organisms’ adaptations at the biochemical level. To adjust to temperature or salinity stress and avoid cell damage, organisms alter their degree of fatty acids (FAs) saturation. Thus, temperature is expected to have strong effects on both the quantity and quality of FAs in aquatic microorganisms. Here we review some recent findings about FAs sensitivity to climate change in contrasting environments. Overall, heat waves may induce changes in the relative abundance of polyunsaturated FAs (PUFA). However, the impact of the exposure to warming waters is different in temperate and polar environments. In cold marine waters, high concentration of omega-3 (ω3) FAs such as eicosapentaenoic acid (EPA) is promoted due to the activation of the desaturase enzyme. In this way, cells have enough energy to produce or activate antioxidant protection mechanisms and avoid oxidative stress due to heat waves. Contrastingly, under high irradiance and heat wave conditions in temperate environments, photosystems’ protection is achieved by decreasing EPA concentration due to desaturase sensitivity. Essential FAs are transferred in aquatic food webs. Therefore, any alteration in the production of essential FAs by phytoplankton (the main source of ω3) due to climate warming can be transferred to higher trophic levels, with cascading effects for the entire aquatic ecosystem.

IntroductionSince 2010, Tanzania has been experiencing frequent outbreaks of dengue. The objectives of this study were to carry out a socio-ecological systems (SES) analysis to identify risk factors and interventions and assess the readiness of the district in the prevention and control of dengue.MethodsThe study utilized a cross-sectional purposive selection of key stakeholders responsible for disease surveillance and response in human and animal sectors in Ilala and Kinondoni districts in Tanzania. A SES framework was used to identify drivers and construct perceived thematic causal explanations of the dengue outbreaks in the study districts. A mapping exercise was carried out to analyse the performance of the disease surveillance system at district and facility levels. A semi-structured questionnaire was used to assess the districts’ readiness in the response to dengue outbreak.ResultsThe two districts were characterized by both urban and peri-urban ecosystems, with a mixture of planned and unplanned settlements which support breeding and proliferation of Aedes mosquitoes. The results indicate inadequate levels of readiness in the management and control of dengue outbreaks, in terms of clinical competence, diagnostic capacities, surveillance system and control/prevention measures. Mosquito breeding sites, especially discarded automobile tyres, were reported to be scattered in the districts. Constraining factors in implementing disease surveillance included both intrapersonal and interpersonal factors, lack of case management guidelines, difficult language used in standard case definitions, inadequate laboratory capacity, lack of appropriate rapid response teams, inadequate knowledge on outbreak investigation and inadequate capacities in data management.ConclusionThe two districts had limited readiness in the management and control of dengue, in terms of clinical competence, diagnostic capacities, surveillance system and prevention and control measures. These challenges require the immediate attention by the authorities, as they compromise the effectiveness of the national strategy for community health support.

Cities in Africa are experiencing fast urbanization with growing demand for basic services. The city of Dar es Salam, one of the fastest growing cities in the region and the world, is likely to guide the urban future in Tanzania. Dar es Salaam is the former capital city of Tanzania and retains its importance as most of the government offices were located. However, the whole process of complete relocation of government offices to the present capital city of Dodoma might affect the dynamics in Dar es Salaam in the near future. Nevertheless, it is the leading commercial centre and economic hub in Tanzania and is expected to be a mega city by 2030. The growth of the city is construed by both natural increase and high rate of migration. However, the city’s organic growth was affected by racial-based residential segregation under the colonial regime, whose imprints are evident to date. In this profile, an overview of Dar es Salaam’s colonial, post-colonial, social, economic and location factors that led to urbanization is provided. This profile highlights the previous, current and future challenges, and explores the pathways to enhance sustainability and transformation of Dar es Salaam to be a smart city. Poor implementation of master plans led to minimal guidance of city growth, but the current land and and human settlement policy emphasizes on sustainable approach in urban planning including low costs but sustainable settlements even for the urban poor. Such transformation requires government and city management to invest in better planning implementation, creation of database that will inform future planning, improvement in social services such as infrastructure, access to quality and affordable housing, water and electricity supply. This paper contributes to the existing literature on nature of cities in developing countries, which had been affected by colonialism and poor implementation of policies, and suggest ways in which cities can to become smarter and sustainable.

International audience; Although relative age effects in sports have been studied worldwide, the underlying mechanisms are still under debate. This study adds to the existing knowledge by providing a further exploration of the within-year and between-year effects and their possible interaction in an individual skill/technique based sport: table tennis. Data of male and female elite players across ages (U15, U18, U21, and senior) were collected from the ranking lists in international (world and Europe) and national contexts (France and the Netherlands). A multi-way frequency analysis per subsample revealed (1) no interaction effects; (2) significant within-year and between-year effects for the U15 players in the international context and male French players; (3) a significant within-year effect in the French U18 category; (4) a significant within-year effect in female European U21; and (5) no within-year effects in the senior category. Table tennis seems to be at risk for within-year and between-year effects specifically within the context of high competitive level for younger players (U15, males, and females), but not for interactions between these effects. Future research should reveal the development of the RAEs over time in a longitudinal study, evaluate influencing constraints, and innovative prevention solutions in a more comprehensive way.

Background: Since 2010, Tanzania has been experiencing frequent outbreaks of dengue. The objective of this study was to carry out a socio-ecological systems analysis and assess the readiness in dengue prevention and control in Kinondoni and Ilala districts of Dar es Salaam City, Tanzania.Methods: Twenty-seven key district officials responsible for human and animal health were involved in a socio-ecological systems framework analysis as regards to dengue. In addition, the readiness of the districts to respond to dengue outbreaks and the performance of the disease surveillance system was assessed.Results: The two districts were characterized by both urban and peri-urban ecosystems, with a mixture of planned and unplanned settlements which support breeding and proliferation of Aedes mosquitoes. The results indicate inadequate levels of readiness in the management and control of dengue outbreaks, in terms of clinical competence, diagnostic capacities, surveillance system and control/prevention measures. Mosquito breeding sites, especially discarded automobile tyres, were reported to be scattered in the districts. Constraining factors in implementing disease surveillance included both intrapersonal and interpersonal factors, lack of case management guidelines, difficult language used in standard case definitions, inadequate laboratory capacity, lack of appropriate rapid response teams, inadequate knowledge on outbreak investigation and inadequate capacities in data management. Conclusion: The two districts had limited readiness in the management and control of dengue, in terms of clinical competence, diagnostic capacities, surveillance system and prevention and control measures. These challenges require the immediate attention by the authorities, as they compromise the effectiveness of the national strategy for community health support.

Background Health Management Information System (HMIS) is a set of data regularly collected at health care facilities to meet the needs of statistics on health services. This study aimed to determine the utilisation of HMIS data and factors influencing the health system’s performance at the district and primary health care facility levels in Tanzania. Methods This cross-sectional study was carried out in 11 districts and involved 115 health care facilities in Tanzania. Data were collected using a semi-structured questionnaire administered to health workers at facility and district levels and documented using an observational checklist. Thematic content analysis approach was used to synthesise and triangulate the responses and observations to extract essential information. Results A total of 93 healthcare facility workers and 13 district officials were interviewed. About two-thirds (60%) of the facility respondents reported using the HMIS data, while only five out of 13 district respondents (38.5%) reported analysing HMIS data routinely. The HMIS data were mainly used for comparing performance in terms of services coverage (53%), monitoring of disease trends over time (50%), and providing evidence for community health education and promotion programmes (55%). The majority (41.4%) of the facility’s personnel had not received any training on data management related to HMIS during the past 12 months prior to the survey. Less than half (42%) of the health facilities had received supervisory visits from the district office 3 months before this assessment. Nine district respondents (69.2%) reported systematically receiving feedback on the quality of their reports monthly and quarterly from higher authorities. Patient load was described to affect staff performance on data collection and management frequently. Conclusion Inadequate analysis and poor data utilisation practices were common in most districts and health facilities in Tanzania. Inadequate human and financial resources, lack of incentives and supervision, and lack of standard operating procedures on data management were the significant challenges affecting the HMIS performance in Tanzania.

Background Mycobacterium avium subspecies paratuberculosis (MAP), the cause of Johne disease, is a slow growing mycobacterium. Viable MAP detection is difficult, inconstant and time-consuming. The purpose of this study was to compare a rapid phage/qPCR assay performed on peripheral blood mononuclear cells (PBMCs) with three standard methods of MAP detection: fecal MAP PCR; plasma antigen-specific IFN-γ & serum MAP ELISA hypothesizing that, if sensitive and specific, Johne animals would be positive and Control animals negative. We studied a well characterized herd of Holstein cattle that were naturally infected with MAP and their Controls. Results With phage/qPCR 72% (23/32) of Johne and 35% (6/17) of Controls were MAP positive. With fecal PCR 75% (24/32) of Johne and 0% (0/17) of Controls were MAP positive. With plasma antigen-specific IFN-γ 69% (22/32) of Johne and 12% (2/17) of Controls were MAP positive. With serum MAP ELISA, 31% (10/32) of Johne and 0% (0/17) of Controls were MAP positive. When phage / qPCR and fecal PCR results were combined, 100% (32/32) Johne and 35% (6/17) of Control animals were MAP positive. Younger Control animals (1–3 years) had significantly fewer plaques (25 ± 17 SEM) than older Controls (4–12 years) (309 ± 134 p = 0.04). The same trend was not observed in the Johne animals (p = 0.19). Conclusions In contrast to our hypothesis, using the phage/qPCR assay we find that viable circulating MAP can rapidly be detected from the blood of animals infected with, as well as those in the Control group evidently colonized by MAP. These data indicate that the presence of viable MAP in blood does not necessarily signify that an animal must of necessity be demonstrably ill or be MAP positive by standard diagnostic methods.

The metal binding motif of all nitrile hydratases (NHases, EC 4.2.1.84) is highly conserved (CXXCSCX) in the α-subunit. Accordingly, an eight amino acid peptide (VCTLCSCY), based on the metal binding motif of the Co-type NHase from Pseudonocardia thermophilia (PtNHase), was synthesized and shown to coordinate Fe(II) under anaerobic conditions. Parallel-mode EPR data on the mononuclear Fe(II)-peptide complex confirmed an integer-spin signal at g' ∼ 9, indicating an S = 2 system with unusually small axial ZFS, D = 0.29 cm-1 Exposure to air yielded a transient high-spin EPR signal most consistent with an intermediate/admixed S = 3/2 spin state, while the integer-spin signal was extinguished. Prolonged exposure to air resulted in the observation of EPR signals at g = 2.04, 2.16, and 2.20, consistent with the formation of a low-spin Fe(III)-peptide complex with electronic and structural similarity to the NHase from Rhodococcus equi TG328-2 (ReNHase). Coupled with MS data, these data support a progression for iron oxidation in NHases that proceeds from a reduced high spin to an oxidized high spin followed by formation of an oxidized low-spin iron center, something that heretofore has not been observed.

Bacteriophage-based methods for detecting Mycobacterium avium subsp. paratuberculosis (MAP) are a potential new approach for diagnosis of Johne's disease (JD). The basis of these tests is a mycobacteriophage (D29) with a lytic lifecycle that is able to infect a range of Mycobacterium spp., not just MAP. When added to a test sample, the phages will bind to and infect mycobacterial cells present. If the host mycobacterial cells are viable, the phages will take over the metabolic machinery of the cells to replicate and produce multiple copies of themselves (phage amplification), before weakening the host cell walls by enzyme action and causing cell lysis. Cell lysis releases the host cell contents, which will include ATP, various enzymes, mycobacterial host DNA and progeny D29 phages; all of which can become the target of subsequent endpoint detection methods. For MAP detection the released host DNA and progeny phages have principally been targeted. As only viable mycobacterial cells will support phage amplification, if progeny phages or host DNA are detected in the test sample (by plaque assay/phage ELISA or qPCR, respectively) then viable mycobacteria were present. This mini-review will seek to: clearly explain the basis of the phage-based tests in order to aid understanding; catalog modifications made to the original plaque assay-based phage amplification assay (FASTPlaqueTB™) over the years; and summarize the available evidence pertaining to the performance of the various phage assays for testing veterinary specimens (bovine milk, blood and feces), relative to current JD diagnostic methods (culture, fecal PCR, and blood-ELISA).

Mycobacterium avium subspecies paratuberculosis (MAP) has long been suspected to be involved in the etiology of Crohn&rsquo, s disease (CD). An obligate intracellular pathogen, MAP persists and influences host macrophages. The primary goals of this study were to test new rapid culture methods for MAP in human subjects and to assess the degree of viable culturable MAP bacteremia in CD patients compared to controls. A secondary goal was to compare the efficacy of three culture methods plus a phage assay and four antibody assays performed in separate laboratories, to detect MAP from the parallel samples. Culture and serological MAP testing was performed blind on whole blood samples obtained from 201 subjects including 61 CD patients (two of the patients with CD had concurrent ulcerative colitis (UC)) and 140 non-CD controls (14 patients in this group had UC only). Viable MAP bacteremia was detected in a significant number of study subjects across all groups. This included Pozzato culture (124/201 or 62% of all subjects, 35/61 or 57% of CD patients), Phage assay (113/201 or 56% of all subjects, 28/61 or 46% of CD patients), TiKa culture (64/201 or 32% of all subjects, 22/61 or 36% of CD patients) and MGIT culture (36/201 or 18% of all subjects, 15/61 or 25% of CD patients). A link between MAP detection and CD was observed with MGIT culture and one of the antibody methods (Hsp65) confirming previous studies. Other detection methods showed no association between any of the groups tested. Nine subjects with a positive Phage assay (4/9) or MAP culture (5/9) were again positive with the Phage assay one year later. This study highlights viable MAP bacteremia is widespread in the study population including CD patients, those with other autoimmune conditions and asymptomatic healthy subjects.

The high mortality rate associated with Listeria monocytogenes as well as its ability to adapt to the harsh conditions employed in food processing have ensured that this pathogen has become a significant concern in the ready-to-eat food industry. Lytic bacteriophages are viruses that hijack their bacterial host’s metabolic mechanisms as a means to grow and replicate, subsequently leading to host cell death due to lysis. With emerging concerns related to the increasing numbers of antibiotic-resistant pathogens, bacteriophages may act as a suitable biocontrol alternative. This study reports the biological and genomic characterisation of the broad host range Listeria monocytogenes phage vB_LmoM_P61 and its potential application for the reduction of Listeria monocytogenes in artificially contaminated foods. Phage vB_LmoM_P61 is a virulent bacteriophage belonging to the family Myoviridae and has a genome size of 136,481 bp. The lytic spectrum of vB_LmoM_P61 was investigated and the genomic basis for its observed serotype specificity (1/2a, 1/2b, 1/2c, 4b, 4e and 6a) investigated using comparative genomics. Treatment of artificially contaminated milk with vB_LmoM_P61 resulted in a significant reduction in Listeria monocytogenes numbers when stored at 8 °C and 12 °C for the duration of the shelf life. The results also show that vB_LmoM_P61 reduced the growth of L. monocytogenes when baby spinach was artificially contaminated and stored at 8 °C and 12 °C. Preliminary studies were carried out on other solid food matrices such as fresh pesto and hummus, however vB_LmoM_P61 was inactivated in these matrices and significantly reduced in concentration. The research findings indicate that biocontrol of Listeria monocytogenes with vB_LmoM_P61 may offer a safe and environmentally friendly approach for the reduction of Listeria monocytogenes numbers in some ready-to-eat foods.

Bulk tank milk samples from 392 Northern Ireland dairy farms and individual milk from animals (n = 293) on 4 of these farms were tested by a novel phagomagnetic separation (PhMS)-quantitative (q)PCR assay able to detect and quantify viable Mycobacterium avium ssp. paratuberculosis (MAP), to demonstrate its potential utility as a milk surveillance tool. Viable MAP were detected in 26.5% of the bulk tank milks, with MAP contamination levels ranging from 1 to 8,432 MAP/50 mL of milk; less than 2% of farms had MAP contamination levels >100 MAP/50 mL in their bulk tank milk. Follow-up PhMS-qPCR testing of milk from individual animals on 4 farms that had the highest numbers of MAP in their bulk tank milks indicated that 17 to 24% of animals in each herd were shedding viable MAP in their milk. Mean MAP numbers detected ranged between 6.7 and 42.1 MAP/50 mL of milk. No significant correlation was observed between the detection of viable MAP in bulk or individual milks by PhMS-qPCR and parallel milk ELISA results, or between PhMS-qPCR results and any other milk recording results (somatic cell count, total bacterial count, % butterfat, or % protein). Viable MAP was detected by IS900 qPCR in 52 (85.2%) Pozzato broth cultures of 61 PhMS-qPCR-positive individual milks after 12 wk of incubation, suggesting few PhMS-qPCR results were false positives. The mean sensitivities of the PhMS-qPCR assay and milk ELISA applied to individual milks were estimated by Bayesian latent class analysis to be 0.7096 and 0.2665, respectively, and mean specificities were similar (0.9626 and 0.9509). Our findings clearly demonstrate that the novel PhMS-qPCR assay could be a useful milk surveillance tool for dairy processors, or a milk monitoring tool for Johne's disease control or milk quality assurance programs.

Abstract Bacteriophage-based methods for the rapid detection of viable Mycobacterium avium subsp. paratuberculosis (MAP) in veterinary specimens are a recent addition to the Johne’s disease diagnostic toolbox. Here, we report the use of D29 mycobacteriophage-coated tosylactivated paramagnetic beads to capture and concentrate MAP cells from samples (termed phagomagnetic separation, PhMS) and then naturally lyse viable MAP cells (from the inside out) to provide DNA for IS900 qPCR purposes. Transmission electron microscopy confirmed that D29 phages had bound to beads in the correct orientation and that the phage-coated beads captured MAP cells from a suspension. During test optimization, conventional IS900 PCR results were used to subjectively assess the effect of different phage:bead coating ratios, differing amounts of coated beads during PhMS, optimal incubation time post-PhMS to obtain maximal MAP DNA, and the potential benefit of a brief heat shock (55 °C/1 min) prior to IS900 TaqMan qPCR. The limit of detection 50% (LOD50%) of the optimised PhMS-qPCR assay was 10.00 MAP cells/50 ml milk (95% CI 1.20–82.83). Finally, in order to demonstrate the new assay’s ability to detect viable MAP in naturally contaminated milk, bulk tank milk samples from 100 dairy farms were tested. Forty-nine (49%) of these tested PhMS-qPCR-positive, with viable MAP numbers detected ranging from 3–126 MAP/50 ml. The novel PhMS-qPCR assay is a sensitive, specific and easy-to-apply phage-based assay for viable MAP, with potential application for milk surveillance or diagnosis of Johne’s disease. Key points • Phage-coated magnetic beads could capture, concentrate and lyse MAP cells from milk. • PhMS-qPCR assay proved to be a rapid, sensitive and specific test for viable MAP. • A potential application of PhMS-qPCR assay for milk surveillance was demonstrated.

Background Effective planning for disease prevention and control requires accurate, adequately-analysed, interpreted and communicated data. In recent years, efforts have been put in strengthening health management information systems (HMIS) in Sub-Saharan Africa to improve data accessibility to decision-makers. This study assessed the quality of routine HMIS data at primary healthcare facility (HF) and district levels in Tanzania. Methods This cross-sectional study involved reviews of documents, information systems and databases, and collection of primary data from facility-level registers, tally sheets and monthly summary reports. Thirty-four indicators from Outpatient, Inpatient, Antenatal care, Family Planning, Post-natal care, Labour and Delivery, and Provider-Initiated Testing and Counselling service areas were assessed. Indicator records were tracked and compared across the process of data collection, compilation and submission to the district office. Copies of monthly report forms submitted by facilities to the district were also reviewed. The availability and utilization of HMIS tools were assessed, while completeness and data accuracy levels were quantified for each phase of the reporting system. Results A total of 115 HFs (including hospitals, health centres, dispensaries) in 11 districts were involved. Registers (availability rate = 91.1%; interquartile range (IQR) 66.7–100%) and report forms (86.9%; IQR 62.2–100%) were the most utilized tools. There was a limited use of tally-sheets (77.8%; IQR 35.6–100%). Tools availability at the dispensary was 91.1%, health centre 82.2% and hospital 77.8%, and was low in urban districts. The availability rate at the district level was 65% (IQR 48–75%). Wrongly filled or empty cells in registers and poor adherence to the coding procedures were observed. Reports were highly over-represented in comparison to registers’ records, with large differences observed at the HF phase of the reporting system. The OPD and IPD areas indicated the highest levels of mismatch between data source and district office. Indicators with large number of clients, multiple variables, disease categorization, or those linked with dispensing medicine performed poorly. Conclusion There are high variations in the tool utilisation and data accuracy at facility and district levels. The routine HMIS is weak and data at district level inaccurately reflects what is available at the source. These results highlight the need to design tailored and inter-service strategies for improving data quality.

BackgroundTalent identification and development (TID) programs aim to identify players with the greatest potential for long-term success. Previous research suggests that the assessment of sport-specific technical skills is valuable for discriminating between more and less skilled individuals and/or for predicting future performance.ObjectiveThis review aims to provide an overview on both the instruments used to assess sport-specific technical skills and their discriminatory, explanatory and/or predictive findings in the context of TID.MethodsElectronic searches were conducted in PubMed, Web of Knowledge, SPORTDiscus, SURF and Scopus (January 1990–October 2019). Search terms covered the areas of sport, technical skills assessment, performance, skill level and youth. In the end, 59 relevant studies were identified and evaluated.ResultsThe results highlight the widespread and important role of technical skills in TID; almost all studies (93%) reported discriminatory, explanatory and/or predictive benefits for the assessment of sport-specific technical skills. Analyzing and categorizing the number of assessment methods applied in the studies (n = 69) according to their method type (‘technique-related’ or ‘outcome-related’ variables) and method set-up (‘experimental’ or ‘competition’ data acquisition environment) indicated a clear tendency towards ‘outcome-related’ (73%) and ‘experimental’ (75%) assessment methods. We also found a strong overrepresentation of studies assessing cross-sectional data (75%) in soccer (53%) in male samples (74% of studies reporting subjects’ sex) from European countries (64%).ConclusionsOn the one hand, our findings demonstrate the great capability of sport-specific technical skills assessments to discriminate different performance levels and predict future performance in TID activities. On the other hand, this review highlights the focus on ‘outcome-related’ and ‘experimental’ methods in specific populations and, consequently, the limited knowledge in other areas. Here, the application of ‘technique-related’ and ‘competition’ methods appears promising for adding new knowledge, especially in the light of technological advances.

Abstract The ability to rapidly detect viable pathogens in food is important for public health and food safety reasons. Culture-based detection methods, the traditional means of demonstrating microbial viability, tend to be laborious, time consuming and slow to provide results. Several culture-independent methods to detect viable pathogens have been reported in recent years, including both nucleic acid–based (PCR combined with use of cell viability dyes or reverse-transcriptase PCR to detect messenger RNA) and phage-based (plaque assay or phage amplification and lysis plus PCR/qPCR, immunoassay or enzymatic assay to detect host DNA, progeny phages or intracellular components) methods. Some of these newer methods, particularly phage-based methods, show promise in terms of speed, sensitivity of detection and cost compared with culture for food testing. This review provides an overview of these new approaches and their food testing applications, and discusses their current limitations and future prospects in relation to detection of viable pathogens in food. Key points • Cultural methods may be ‘gold standard’ for assessing viability of pathogens, but they are too slow. • Nucleic acid–based methods offer speed of detection but not consistently proof of cell viability. • Phage-based methods appear to offer best alternative to culture for detecting viable pathogens.

Training in elite sport aims at the optimization of the athletic performance, and to control the athletes`progress in physiological, anthropometrical and motor performance prerequisites. However, in most sports, the value of longitudinal testing is unclear. This study evaluates the longitudinal development and the influence of intense training over 2-years on specific physiological performance prerequisites, as well as certain body dimensions and motor abilities in elite youth athletes. Recruited between 11-13 years of age at Shanghai Elite Sport school, the sample of student-athletes (N = 21) was categorized as the swimming group (10 athletes), and the racket sports group (11 players: 7 table tennis and 4 badminton players). The performance monitoring took place over two years between September 2016 and September 2018 and included 5 test waves. In all the test waves, the athletes were assessed by means of three physiological measurements (vital capacity, hemoglobin concentration, heart rate at rest), three anthropometric parameters (body height, body weight, chest girth), and two motor tests (back strength, complex reaction speed). Seven out of eight diagnostic methods exhibit medium to high validity to discriminate between the different levels of performance development in the two sports groups. The investigated development of the performance characteristics is attributed partly to the inherited athletic disposition as well as to the different sport-specific training regimens of the two sports groups.

PURPOSE This retrospective study sought to determine the type, burden, and pattern of cancer deaths in public hospitals in Tanzania from 2006 to 2015. METHODS This study analyzed data on cancer mortality in 39 hospitals in Tanzania. Data on the age and sex of the deceased and type of cancer were extracted from hospital death registers and report forms. Cancer types were grouped according to the 10th revision of the International Classification of Diseases. Age-standardized mortality rates and cancer mortality patterns were analyzed. A χ2 test was used to examine the association between common cancers and selected covariates. RESULTS A total of 12,621 cancer-related deaths occurred during the 10-year period, which translates to an age-standardized hospital-based mortality rate of 47.8 per 100,000 population. Overall, the number of deaths was notably higher (56.5%) among individuals in the 15- to 59-year-old age category and disproportionately higher among females than males ( P = .0017). Cancers of the cervix, esophagus, and liver were the 3 major causes of death across all study hospitals in Tanzania. Cancers of the cervix, esophagus, and liver were the largest contributors to mortality burden among females. Among males, cancers of the esophagus, liver, and prostate were the leading cause of mortality. CONCLUSION There is an increasing trend in cancer mortality over recent years in Tanzania, which differs with respect to age, sex, and geographic zones. These findings provide a basis for additional studies to ascertain incidence rates and survival probabilities, and highlight the need to strengthen awareness campaigns for early detection, access to care, and improved diagnostic capabilities.

Antimicrobial effects of multiple physical, biological and natural interventions on pathogenic Escherichia coli in raw beef were assessed. A cocktail of E. coli strains was inoculated onto gamma-irradiated beef and enumerated immediately after each intervention and during storage at 4°C for 7 days. Of the physical interventions, silver-containing antimicrobial packaging and ozone gas treatment did not show significant antimicrobial effects, however cold plasma treatment reduced E. coli levels by 0.9 and 1.82 log10 CFU/cm2 after 2 and 5 min treatments, respectively. A phage cocktail reduced E. coli counts by 0.63 and 1.16 log10 CFU/g after 24 h storage at 4 and 12oC, respectively. Of the natural interventions, vinegar and lactic acid (5%) washes for 5 min caused reductions of ~1 log10 CFU/g immediately after treatment, whereas lactoferrin and nisin treatments, separately or in combination, had insignificant antimicrobial effects. Nanoemulsions containing carvacrol or thyme essential oils caused immediate E. coli reductions of 1.41 and 1.36 log10 CFU/g, respectively, plus a progressive reduction in viable numbers during storage at 4oC. Our findings suggest that cold plasma, bacteriophages, vinegar, lactic acid, or carvacrol and thyme essential oil nanoemulsions could potentially be of use to the beef industry for controlling pathogenic E. coli contamination.

Background Accurate and reliable hospital information on the pattern and causes of death is important to monitor and evaluate the effectiveness of health policies and programs. The objective of this study was to assess the availability, accessibility, and quality of hospital mortality data in Tanzania. Methods This cross-sectional study involved selected hospitals of Tanzania and was carried out from July to October 2016. Review of hospital death registers and forms was carried out to cover a period of 10 years (2006–2015). Interviews with hospital staff were conducted to seek information as regards to tools used to record mortality data, staff involved in recording and availability of data storage and archiving facilities. Results A total of 247,976 death records were reviewed. The death register was the most (92.3%) common source of mortality data. Other sources included the International Classification of Diseases (ICD) report forms, Inpatient registers, and hospital administrative reports. Death registers were available throughout the 10-year period while ICD-10 forms were available for the period of 2013–2015. In the years between 2006 and 2010 and 2011–2015, the use of death register increased from 82 to 94.9%. Three years after the introduction of ICD-10 procedure, the forms were available and used in 28% (11/39) hospitals. The level of acceptable data increased from 69% in 2006 to 97% in 2015. Inconsistency in the language used, use of non-standard nomenclature for causes of death, use of abbreviations, poorly and unreadable handwriting, and missing variables were common data quality challenges. About 6.3% (n = 15,719) of the records had no patient age, 3.5% (n = 8790) had no cause of death and ~ 1% had no sex indicated. The frequency of missing sex variable was most common among under-5 children. Data storage and archiving in most hospitals was generally poor. Registers and forms were stored in several different locations, making accessibility difficult. Conclusion Overall, this study demonstrates gaps in hospital mortality data availability, accessibility, and quality, and highlights the need for capacity strengthening in data management and periodic record reviews. Policy guidelines on the data management including archiving are necessary to improve data.

Introduction and objectives New biomarkers could improve the predictive capacity of classic risk functions. The aims of this study were to determine the association between circulating levels of apolipoprotein A1 (apoA1), apolipoprotein B (apoB), albumin , and 25-OH-vitamin D and coronary events and to analyze whether these biomarkers improve the predictive capacity of the Framingham-REGICOR risk function. Methods A case-cohort study was designed. From an initial cohort of 5404 individuals aged 35 to 74 years with a 5-year follow-up, all the participants who had a coronary event (n = 117) and a random group of the cohort (subcohort; n = 667) were selected. Finally, 105 cases and 651 individuals representative of the cohort with an available biological sample were included. The events of interest were angina , fatal and nonfatal myocardial infarction and coronary deaths. Results Case participants were older, had a higher proportion of men and cardiovascular risk factors, and showed higher levels of apoB and lower levels of apoA1, apoA1/apoB ratio, 25-OH-vitamin D and albumin than the subcohort. In multivariate analyses, plasma albumin concentration was the only biomarker independently associated with coronary events (HR, 0.73; P = . 002). The inclusion of albumin in the risk function properly reclassified a significant proportion of individuals, especially in the intermediate risk group (net reclassification improvement, 32.3; P = .048). Conclusions Plasma albumin levels are inversely associated with coronary risk and improve the predictive capacity of classic risk functions.

We investigated the effects of ocean warming and glacial melting on phytoplankton assemblage composition and physiology in coastal Antarctica by exposing assemblages to a 4 °C increase in seawater temperature (T) and a 4 psu decrease in salinity (S) with respect to ambient values in a 6-day microcosm experiment. Seawater samples from Potter Cove in King George Island (Antarctica) were placed in outdoor microcosms and exposed to four treatments: ambient S-ambient T (S0T0, control), low S-ambient T (S-T0), ambient S-high T (S0T+), and low S-high T (S-T+). The relative abundance of unsaturated fatty acids (UFAs) 20:5ω3, 18:4ω3 and 16:1ω7 in relation to saturated FAs (14:0 and 16:0) significantly increased in all treatments at 24 h, compared to the control. At the same time, we detected a significant increase in the production of Thiobarbituric Acid Reactive Substances (TBARS), used as a proxy for lipid damage, in the S-T0 and the S0T+ treatments. In contrast, in S-T+, concentrations of TBARS remained significantly lower than in the control throughout the experiment. Although phytoplankton species composition did not change during the experiment, an increase in the relative abundance of diatoms (>20 μm) was found in all treatments compared to the control at 24 h, with no further changes during the rest of the experiment. Furthermore, the relative abundance of small diatoms (10–20 μm) increased only in S0T+, and small prasinophytes decreased at S-T+ at the end of the incubation period. Our results show a stable unsaturated to saturated FA ratio under the synergistic effects of high temperature and lower salinity, which may help protect phytoplankton cells from lipid damage. When phytoplankton assemblages were exposed to high temperature or low salinity, separately, the proportion of unsaturated FAs increased after 48 h. This increase in FAs resulted in greater lipid damage, which could be potentially avoided, as shown by previous studies, by antioxidant responses or changes in osmoregulatory proteins and FA synthesis by the activation or inactivation of desaturase enzymes. Variations in FA content due to changing environmental conditions can alter the quality of phytoplankton as a food source with potentially critical implications for the marine food web. Fil: Hernando, Marcelo Pablo. Comisión Nacional de Energía Atómica; Argentina Fil: Schloss, Irene Ruth. Ministerio de Relaciones Exteriores, Comercio Interno y Culto. Dirección Nacional del Antártico. Instituto Antártico Argentino; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina. Universidad Nacional de Tierra del Fuego; Argentina Fil: Almandoz, Gaston Osvaldo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina Fil: Malanga, Gabriela Fabiana. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Bioquímica y Medicina Molecular. Universidad de Buenos Aires. Facultad Medicina. Instituto de Bioquímica y Medicina Molecular; Argentina Fil: Varela, Diana E.. University of Victoria; Canadá Fil: De Troch, Marleen. University of Ghent; Bélgica

Campylobacter jejuni is a leading cause of foodborne illness worldwide, mainly due to consumption and handling of contaminated raw chicken. Rapid detection methods for C. jejuni are vital for monitoring contamination levels in chicken products and reducing human Campylobacteriosis cases. The ‘gold standard’ culture-based method of Campylobacter detection takes 3–5 days and is too slow to permit effective intervention. Immuno-based methods are faster, but usually necessitate use of animals or hybridoma technology to produce antibodies; making them difficult and expensive to produce. Here, we report the generation and characterization of recombinant single-chain variable fragment (scFv) antibodies specific for C. jejuni cells, and evaluation of one scFv antibody for an immunomagnetic separation-quantitative PCR (IMS-qPCR) method to rapidly, sensitively, and specifically detect low numbers of C. jejuni. An scFv antibody phage-display library was constructed using spleen mRNA derived from a rabbit immunized with gamma-irradiated C. jejuni cells. This library was screened by surface biopanning against C. jejuni whole cells. Enriched clones were analyzed by enzyme-linked immunosorbent assay (ELISA). Two scFv antibodies that strongly and specifically recognized C. jejuni cell were expressed in Escherichia coli. Western blot analysis showed that one antibody, scFv80, was expressed as a soluble protein and retained its specific and strong binding to C. jejuni cells. This recombinant monoclonal scFv antibody was purified and used to covalently coat paramagnetic beads to be used for IMS-qPCR. The IMS-qPCR method was able to specifically and sensitively detect C. jejuni in mixed cultures within 3 h. Electronic supplementary material The online version of this article (10.1007/s00253-018-8949-x) contains supplementary material, which is available to authorized users.

Proteomics aids to the discovery and expansion of protein-protein interaction networks, which are key to understand molecular mechanisms in physiology and physiopathology, but also to infer protein function in a guilt-by-association fashion. In this study we use a systematic protein-protein interaction membrane yeast two-hybrid method to expand the interactome of TRPV2, a cation channel related to nervous system development. After validation of the interactome in silico, we define a TRPV2-interactome signature combining proteomics with the available physio-pathological data in Disgenet to find interactome-disease associations, highlighting nervous system disorders and neoplasms. The TRPV2-interactome signature against available experimental data is capable of discriminating overall risk in glioblastoma multiforme prognosis, progression, recurrence, and chemotherapy resistance. Beyond the impact on glioblastoma physiopathology, this study shows that combining systematic proteomics with in silico methods and available experimental data is key to open new perspectives to define novel biomarkers for diagnosis, prognosis and therapeutics in disease. This project has been carried out with funding from Spanish Government (MICINN-SAF2010-21385 and BFU2017-87843-R to A.P.-M), a Marie Curie International Outgoing Fellowship within the 7th European Community Framework Programme (PIOF-GA-2009-237120 to A.P.-M.), the Generalitat de Catalunya research program (AGAUR, 2014-SGR-1628 to A.P.-M.). P.D.-M. was the recipient of a FI fellowship from Generalitat de Catalunya (FI-2013FIB00251); A.P.-M. was the recipient of the Universitat Autònoma de Barcelona-Programa Banco de Santander Fellowship

Talent selection has become an integral part of many nations’ athlete development systems. In this context, a coach often serves as a decision-maker, selecting or deselecting athletes based on their intuition, a phenomenon that has generally come to be referred to as “coach’s eye”. However, there is no consistent operational definition of this term. To this end, we reviewed prior work using the term “coach’s eye” as reflecting the process of coaches assessing and selecting athletes during talent selection scenarios. Based on previous research, four main characteristics of the coaches’ eye were identified: intuitive, subjective, experience-based and holistic. Results emphasize the underlying mechanisms of the coach’s eye are still unknown and links to theoretical models are missing. In the final section of this paper, we describe a model from decision-making research, the iCodes model (integrated coherence-based decision and search model) by Jekel, Glockner, and Broder (2018), and apply it to talent selection scenarios. We believe this model provides a useful starting point for investigating the decision process and the underlying mechanisms of the coach’s eye.

Zooplankton diversity has been identified as one of the biological Essential Ocean Variables to detect temporal and spatial changes in marine biodiversity and ecosystem health. The present study evaluated the mesozooplankton community composition and abundance associated with oceanographic variables in Nuevo Gulf (NG, 42° 42′S, 64° 30′W), a World Heritage Site in Argentinian Patagonia and part of the Valdes Biosphere Reserve. We found that >43% of total mesozooplankton community abundance was composed by copepods, followed by cladocerans (24%) in spring, while copepods represented more than 98% in summer. Variability of the abundances in most mesozooplankton groups was associated with chlorophyll a and temperature values. Among copepods, Calanoida predominated in the community, mainly reflecting high densities of Ctenocalanus vanus, especially in summer. In addition, we report for the first time the presence of the copepod Drepanopus forcipatus in this Gulf. Zooplankton information for this region is scarce and fragmented, thus a short review of previous mesozooplankton studies from nearby areas is included for context. Our work emphasizes the importance of continuous and long-term monitoring to better understand the zooplankton community under expected environmental changes.

When advising farmers on how to control Johne's disease in an infected herd, one of the main recom- mendations is to avoid feeding waste milk to calves and instead feed calf milk replacer (CMR). This advice is based on the assumption that CMR is free of viable Mycobacterium avium ssp. paratuberculosis (MAP) cells, an assumption that has not previously been chal- lenged. We tested commercial CMR products (n = 83) obtained from dairy farms around the United States by the peptide-mediated magnetic separation (PMS)-phage assay, PMS followed by liquid culture (PMS-culture), and direct IS900 quantitative PCR (qPCR). Conven- tional microbiological analyses for total mesophilic bac- terial counts, coliforms, Salmonella, coagulase-negative staphylococci, streptococci, nonhemolytic Corynebacte- rium spp., and Bacillus spp. were also performed to assess the overall microbiological quality of the CMR. Twenty-six (31.3%) of the 83 CMR samples showed evidence of the presence of MAP. Seventeen (20.5%) tested positive for viable MAP by the PMS-phage as- say, with plaque counts ranging from 6 to 1,212 pfu/50 mL of reconstituted CMR (average 248.5 pfu/50 mL). Twelve (14.5%) CMR samples tested positive for vi- able MAP by PMS-culture; isolates from all 12 of these samples were subsequently confirmed by whole-genome sequencing to be different cattle strains of MAP. Seven (8.4%) CMR samples tested positive for MAP DNA by IS900 qPCR. Four CMR samples tested positive by both PMS-based tests and 5 CMR samples tested positive by IS900 qPCR plus one or other of the PMS- based tests, but only one CMR sample tested positive by all 3 MAP detection tests applied. All conventional microbiology results were within current standards for whole milk powders. A significant association existed between higher total bacterial counts and presence of viable MAP indicated by either of the PMS-based as- says. This represents the first published report of the isolation of viable MAP from CMR. Our findings raise concerns about the potential ability of MAP to survive manufacture of dried milk-based products.

BACKGROUND Previous studies showed that human bone marrow stromal HS-5 cells secreted unidentified factor(s) inducing PCa cell death. Herein, the HS-5-derived factor (HS-5 DF) was characterized and identified. METHODS Conditioned media from confluent HS-5 cells were collected and modified for biochemical characteristic testing of HS-5 DF. Cell survival was measured by apoptosis assay and live/dead assay. Fibulin-1 was identified from gel electrophoresis and mass spectrometry. The validation of Fibulin-1 as a HS-5 DF was done by immunoprecipitation (IP) and genetic knockdown by CRISPR/Cas9 system. RESULTS HS-5 DF was trypsin and heat sensitive, but pH stable. The tentative size of the factor fell between 30 kDa and 100 kDa. TGF-β1 treatment led to a suppression of HS-5 DF activity, a property consistent with bone metastasis in prostate cancer. Examination of TGF-β1 down regulated proteins led to identification of fibulin-1 as a candidate for the DF. IP of Fibulin-1 from HS-5 CM and CRISPR knockdown of Fibulin-1 showed a significant reduction of HS-5 CM-derived PCa cell death. These results strongly support a role for fibulin-1 in HS-5 bone marrow stromal cell induction of PCa cell death. CONCLUSION Our data indicate that Fibulin-1 functions as a HS-5 bone marrow stromal cell-derived factor inducing prostate cancer cell death. Prostate © 2016 Wiley Periodicals, Inc.

SUMMARY General principles in biology have often been elucidated from the study of bacteria. This is true for the bacterial mechanosensitive channel of large conductance, MscL, the channel highlighted in this review. This channel functions as a last-ditch emergency release valve discharging cytoplasmic solutes upon decreases in osmotic environment. Opening the largest gated pore, MscL passes molecules up to 30 A in diameter; exaggerated conformational changes yield advantages for study, including in vivo assays. MscL contains structural/functional themes that recur in higher organisms and help elucidate how other, structurally more complex, channels function. These features of MscL include (i) the ability to directly sense, and respond to, biophysical changes in the membrane, (ii) an α helix (“slide helix”) or series of charges (“knot in a rope”) at the cytoplasmic membrane boundary to guide transmembrane movements, and (iii) important subunit interfaces that, when disrupted, appear to cause the channel to gate inappropriately. MscL may also have medical applications: the modality of the MscL channel can be changed, suggesting its use as a triggered nanovalve in nanodevices, including those for drug targeting. In addition, recent studies have shown that the antibiotic streptomycin opens MscL and uses it as one of the primary paths to the cytoplasm. Moreover, the recent identification and study of novel specific agonist compounds demonstrate that the channel is a valid drug target. Such compounds may serve as novel-acting antibiotics and adjuvants, a way of permeabilizing the bacterial cell membrane and, thus, increasing the potency of commonly used antibiotics.

15 pages, 7 figures, 5 tables, supplementary data https://doi.org/10.1016/j.marenvres.2019.104790, Sea-ice and coastal glacier loss in the Western Antarctic Peninsula open new ice-free areas. They allowing primary production and providing new seabed for colonisation, both acting as a negative feedback of climate change. However, the injection of sediment-laden runoff from the melting of land-terminating glaciers may reduce this feedback. Changes in particulate matter will affect nutrition and excretion (faeces stoichiometry and properties) of suspension feeders, reshaping coastal carbon dynamics and pelagic-benthic coupling. Absorption efficiency and biodeposition of Euphausia superba and Cnemidocarpa verrucosa were quantified for different food treatments and varying sediment concentrations. Both species showed high overall absorption efficiency for free-sediment diets, but were negatively affected by sediment addition. High sediment conditions increased krill biodeposition, while it decreased in ascidians. Energy balance estimation indicated high carbon sink potential in ascidians, but it is modulated by food characteristics and negatively affected by sediment inputs in the water column, This project benefited from the financial support of the Total Foundation (ECLIPSE Project), Argentinean funds through PICT-Raíces 2011–1320 to IS, PICTO-DNA Nº 119. It has been additionally supported by the European Commision under the 7th Framework Programme through the Action – IMCONet (FP7 IRSES, action no. 319718). It is a contribution to the Coastal Ecology Monitoring programme of Instituto Antártico Argentino/Dirección Nacional del Antártico in Carlini Station and the research program PACES II (topic 1, work package 5) of the Alfred Wegener Institute. GA and TM received a PhD scholarship (CONICET) at the Universidad Nacional de Córdoba

The Beagle Channel is a remote subantarctic environment where mussel aquaculture initiatives have existedsince the early 1990s. Here we analyze phytoplankton biomass and composition, and the occurrence of harmfulmicroalgae species and their toxins at three sites during the period 2015?2016. The occurrence of potentiallyharmful algae was observed throughout the study period, including toxigenic dinoflagellates such asAlexandrium catenella (Group I of the A. tamarense complex), A. ostenfeldii, Dinophysis acuminata, Gonyaulaxspinifera, Azadinium sp., and the diatoms Pseudo-nitzschia australis and P. fraudulenta. Toxic dinoflagellates weredetected in low densities whereas a Pseudo-nitzschia bloom was observed in late February. Isolates of A. catenellaand P. delicatissima sensu stricto were phylogenetically characterized. The toxin profile of A. catenella wasdominated by GTX4, while P. delicatissima sensu stricto showed no production of the neurotoxin domoic acid inculture conditions. The results provide base-line information for the management of harmful algal blooms in thislittle explored subantarctic area. Fil: Almandoz, Gaston Osvaldo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina Fil: Cefarelli, Adrián Oscar. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Centro de Investigaciones y Transferencia Golfo San Jorge. Centro de Investigaciones y Transferencia Golfo San Jorge: Sede Caleta Olivia - Santa Cruz | Universidad Nacional de la Patagonia Austral. Centro de Investigaciones y Transferencia Golfo San Jorge. Centro de Investigaciones y Transferencia Golfo San Jorge: Sede Caleta Olivia - Santa Cruz | Universidad Nacional de la Patagonia "san Juan Bosco". Centro de Investigaciones y Transferencia Golfo San Jorge. Centro de Investigaciones y Transferencia Golfo San Jorge: Sede Caleta Olivia - Santa Cruz; Argentina. Universidad Nacional de la Patagonia "San Juan Bosco". Instituto de Desarrollo Costero; Argentina Fil: Diodato, Soledad Lorena. Universidad Nacional de Tierra del Fuego, Antártida e Islas del Atlántico Sur. Instituto de Ciencias Polares, Ambientales y Recursos Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina Fil: Montoya, Nora Gladys. Instituto Nacional de Investigaciones y Desarrollo Pesquero; Argentina Fil: Benavides, Hugo R.. Instituto Nacional de Investigaciones y Desarrollo Pesquero; Argentina Fil: Carignan, Mario Osvaldo. Instituto Nacional de Investigaciones y Desarrollo Pesquero; Argentina Fil: Hernando, Marcelo Pablo. Comisión Nacional de Energía Atómica; Argentina Fil: Fabro Cerreia Fus, Elena Ines. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina Fil: Metfies, Katja. Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung; Alemania Fil: Lundholm, Nina. Universidad de Copenhagen; Dinamarca Fil: Schloss, Irene Ruth. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina. Universidad Nacional de Tierra del Fuego; Argentina. Ministerio de Relaciones Exteriores, Comercio Interno y Culto. Dirección Nacional del Antártico. Instituto Antártico Argentino; Argentina Fil: Álvarez, Marcela. Instituto Nacional de Investigaciones y Desarrollo Pesquero. Dirección de Pesquerías Demersales. Programa Pesquerías de Peces Demersales Costeros; Argentina Fil: Ferrario, Martha Elba. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina

To accelerate malaria elimination in areas where core interventions such as insecticide-treated nets (ITNs) are already widely used, it is crucial to consider additional factors associated with persistent transmission. Qualitative data on human behaviours and perceptions regarding malaria risk was triangulated with quantitative data on Anopheles mosquito bites occurring indoors and outdoors in south-eastern Tanzania communities where ITNS are already used but lower level malaria transmission persists. Each night (18:00h-07:00h), trained residents recorded human activities indoors, in peri-domestic outdoor areas, and in communal gatherings. Host-seeking mosquitoes were repeatedly collected indoors and outdoors hourly, using miniaturized exposure-free double net traps (DN-Mini) occupied by volunteers. In-depth interviews were conducted with household representatives to explore perceptions on persistent malaria and its control. Higher proportions of people stayed outdoors than indoors in early-evening and early-morning hours, resulting in higher exposures outdoors than indoors during these times. However, exposure during late-night hours (22:00h-05:00h) occurred mostly indoors. Some of the popular activities that kept people outdoors included cooking, eating, relaxing and playing. All households had at least one bed net, and 83.9% of people had access to ITNs. Average ITN use was 96.3%, preventing most indoor exposure. Participants recorgnized the importance of ITNs but also noted that the nets were not perfect. No complementary interventions were reported being used widely. Most people believed transmission happens after midnight. We conclude that insecticide-treated nets, where properly used, can still prevent most indoor exposures, but significant risk continues unabated before bedtime, outdoors and at communal gatherings. Such exposure is greatest for rural and low-income households. There is therefore an urgent need for complementary interventions, particularly those targeting outdoor-biting and are applicable for all people including the marginalised populations such as migratory farmers and fishermen. Besides, the differences in community understanding of ongoing transmission, and feedback on imperfections of ITNs should be considered when updating malaria-related communication and interventions.

The west Antarctic Peninsula (WAP) region has undergone significant changes in temperature and seasonal ice dynamics since the mid-twentieth century, with strong impacts on the regional ecosystem, ocean chemistry and hydrographic properties. Changes to these long-term trends of warming and sea ice decline have been observed in the 21st century, but their consequences for ocean physics, chemistry and the ecology of the high-productivity shelf ecosystem are yet to be fully established. The WAP shelf is important for regional krill stocks and higher trophic levels, whilst the degree of variability and change in the physical environment and documented biological and biogeochemical responses make this a model system for how climate and sea ice changes might restructure high-latitude ecosystems. Although this region is arguably the best-measured and best-understood shelf region around Antarctica, significant gaps remain in spatial and temporal data capable of resolving the atmosphere-ice-ocean-ecosystem feedbacks that control the dynamics and evolution of this complex polar system. Here we summarise the current state of knowledge regarding the key mechanisms and interactions regulating the physical, biogeochemical and biological processes at work, the ways in which the shelf environment is changing, and the ecosystem response to the changes underway. We outline the overarching cross-disciplinary priorities for future research, as well as the most important discipline-specific objectives. Underpinning these priorities and objectives is the need to better define the causes, magnitude and timescales of variability and change at all levels of the system. A combination of traditional and innovative approaches will be critical to addressing these priorities and developing a co-ordinated observing system for the WAP shelf, which is required to detect and elucidate change into the future. Fil: Henley, Sian F.. University of Edinburgh; Reino Unido Fil: Schofield, Oscar M.. State University of New Jersey; Estados Unidos Fil: Hendry, Katharine R.. University Of Bristol; Reino Unido Fil: Schloss, Irene Ruth. Universidad Nacional de Tierra del Fuego; Argentina. Ministerio de Relaciones Exteriores, Comercio Interno y Culto. Dirección Nacional del Antártico. Instituto Antártico Argentino; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Steinberg, Deborah K.. Virginia Institute of Marine Science. College of William and Mary; Estados Unidos Fil: Moffat, Carlos. University of Delaware; Estados Unidos Fil: Peck, Lloyd S.. British Antarctic Survey; Reino Unido Fil: Costa, Daniel P.. University of California Santa Cruz; Estados Unidos Fil: Bakker, Dorothee C.E.. University of East Anglia; Reino Unido Fil: Hughes, Claire. University Of California, Santa Cruz; Fil: Rozema, Patrick D.. University of East Anglia; Reino Unido Fil: Ducklow, Hugh W.. Columbia University; Estados Unidos Fil: Abele, Doris. Alfred Wegener Institute; Alemania Fil: Stefels, Jacqueline. University of Groningen; Países Bajos Fil: Van Leeuwe, Maria A.. University of Groningen; Países Bajos Fil: Brussaard, Corina P.D.. Royal Netherlands Institute for Sea Research; Países Bajos Fil: Buma, Anita G.J.. University of Groningen; Países Bajos Fil: Kohut, Josh. Royal Netherlands Institute For Sea Research - Nioz; Fil: Sahade, Ricardo Jose. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Diversidad y Ecología Animal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto de Diversidad y Ecología Animal; Argentina. University Of Groningen; Fil: Friedlaender, Ari S.. State University of New Jersey; Estados Unidos Fil: Stammerjohn, Sharon E.. State University of Colorado at Boulder; Estados Unidos Fil: Venables, Hugh J.. British Antarctic Survey; Reino Unido Fil: Meredith, Michael. British Antarctic Survey; Reino Unido

A correction to this paper has been published: https://doi.org/10.1007/s00300-021-02834-3

This study rigorously evaluated a previously developed immunobead array method to simultaneously detect three important foodborne pathogens, Campylobacter jejuni, Listeria monocytogenes, and Salmonella spp., for its actual application in routine food testing. Due to the limitation of the detection limit of the developed method, an enrichment step was included in this study by using Campylobacter Enrichment Broth for C. jejuni and Universal Pre-enrichment Broth for L. monocytogenes and Salmonella spp.. The findings showed that the immunobead array method was capable of detecting as low as 1CFU of the pathogens spiked in the culture media after being cultured for 24h for all three pathogens. The immunobead array method was further evaluated for its pathogen detection capabilities in ready-to-eat (RTE) and ready-to-cook (RTC) chicken samples and proven to be able to detect as low as 1CFU of the pathogens spiked in the food samples after being cultured for 24h in the case of Salmonella spp., and L. monocytogenes and 48 h in the case of C. jejuni. The method was subsequently validated with three types of chicken products (RTE, n=30; RTC, n=20; raw chicken, n=20) and was found to give the same results as the conventional plating method. Our findings demonstrated that the previously developed immunobead array method could be used for actual food testing with minimal enrichment period of only 52 h, whereas the conventional ISO protocols for the same pathogens take 90-144 h. The immunobead array was therefore an inexpensive, rapid and simple method for the food testing.

Consumption of milk and dairy products is considered one of the main routes of human exposure to Mycobacterium avium subsp. paratuberculosis (MAP). Quantitative data on MAP load in raw cows’ milk are essential starting point for exposure assessment. Our study provides this information on a regional scale, estimating the load of MAP in bulk tank milk (BTM) produced in Emilia‐Romagna region (Italy). The survey was carried out on 2934 BTM samples (88.6% of the farms herein present) using two different target sequences for qPCR (f57 and IS900). Data about the performances of both qPCRs are also reported, highlighting the superior sensitivity of IS900‐qPCR. Seven hundred and eighty‐nine samples tested MAP‐positive (apparent prevalence 26.9%) by IS900 qPCR. However, only 90 of these samples were quantifiable by qPCR. The quantifiable samples contained a median load of 32.4 MAP cells mL −1 (and maximum load of 1424 MAP cells mL −1). This study has shown that a small proportion (3.1%) of BTM samples from Emilia‐Romagna region contained MAP in excess of the limit of detection (1.5 × 101 MAP cells mL −1), indicating low potential exposure for consumers if the milk subsequently undergoes pasteurization or if it is destined to typical hard cheese production.

Coastal phytoplankton assemblages from Potter Cove in Antarctica were exposed to low salinity (S-) and high temperature (T+) conditions to simulate oceanic changes resulting from global warming. The treatments were: low salinity (30) and high temperature (S-T+); low salinity and ambient temperature (1–2 °C) (S-T0); ambient salinity (34) and increased temperature (4–5 °C) (S0T+) and ambient salinity with ambient temperature (control, S0T0). Experiments were conducted in 100-L microcosms and monitored for 6 days. Compared to the control treatment, micro-size diatoms (25–50 μm) dominated the phytoplankton assemblages while prasinophyceae were less abundant at the end of the S-T+ and S0T+ treatments. Nano-size diatoms (10–20 μm) also increased significantly at the end of the experiment but only when exposed to S0T+. In S- treatments, the production of reactive oxygen/ nitrogen species (ROS/RNS) increased while phytoplankton biomass decreased. Under T+ conditions, the production of ROS/RNS was significantly lower than in T0 treatments. Throughout the experiment, α-Tocopherol (α-T) consumption may have prevented lipid damage, allowing for increases in photosynthetic rate and growth when nutrients concentrations were sufficiently high. Our results indicate that an increase in temperature can compensate for the lipid damage produced by low salinity, and stimulate carbon uptake in both conditions. This study demonstrated that the final composition of phytoplankton assemblages in all experimental treatments was strongly influenced by the original composition. Future changes in natural phytoplankton assemblages in Antarctic coastal waters will therefore depend on the planktonic species present at the time of the perturbation, which can strongly impact energy flow along food webs and the magnitude of carbon and nutrient fluxes in Antarctic waters.

Transient receptor potential cation channels are emerging as important physiological and therapeutic targets. Within the vanilloid subfamily, transient receptor potential vanilloid 2 (TRPV2) and 4 (TRPV4) are osmo- and mechanosensors becoming critical determinants in cell structure and activity. However, knowledge is scarce regarding how TRPV2 and TRPV4 are trafficked to the plasma membrane or specific organelles to undergo quality controls through processes such as biosynthesis, anterograde/retrograde trafficking, and recycling. This review lists and reviews a subset of protein-protein interactions from the TRPV2 and TRPV4 interactomes, which is related to trafficking processes such as lipid metabolism, phosphoinositide signaling, vesicle-mediated transport, and synaptic-related exocytosis. Identifying the protein and lipid players involved in trafficking will improve the knowledge on how these stretch-related channels reach specific cellular compartments. This work was supported by Marie Curie International Outgoing Fellowship within the 7th European Community Framework Programme (PIOF-GA-2009-237120 to A.P.-M.), a Universitat Autònoma de Barcelona-Programa Banco de Santander Fellowship, and the Spanish Government grant MINECO BFU2017-87843-R to A.P.-M. P.D.-M. was a recipient of an FI fellowship from Generalitat de Catalunya (FI-2013FIB00251). I.R.D. was supported by the Carlos III Health Institute, co-financed with European Union European Regional Development Funds (CIBERCV CB16/11/00229), and by the Strategic Plan for research and health innovation (PERIS) (SLT006/17/00029).

Background: Mycobacterium avium subsp. paratuberculosis (MAP) is the causative agent of paratuberculosis, a contagious infectious disease that affects domestic and wild ruminants causing chronic inflammation of the intestine. MAP has proven to be very resistant to both physical and chemical processes, making it difficult to control this pathogen. Based on the recognized antimicrobial properties of copper, the objective of this study was to evaluate the effectiveness of copper ions to reduce MAP numbers and/or MAP viability in a fluid matrix. Besides, methicillin-resistant Staphylococcus aureus (MRSA), and Escherichia coli were used as controls of the effectiveness of copper ions. MAP-spiked PBS was subjected to copper ions treatment at 24 V for 5 min and the PBS suspensions were sampled before and after treatment. MAP viability and quantification weredetermined using three complementary techniques: a phage amplification assay, MGIT culture and qPCR.Results: Moderate numbers (103 CFU ml−1) of the two control bacteria were completely eliminated by treatment with copper ions. For MAP, copper ions treatment reduced both the viability and numbers of thispathogen. Phage assay information quickly showed that copper ions (24 V for 5 min) resulted in a significant reduction in viable MAP. MGIT culture results over time showed statistically significant differences in time-to-detection (TTD) values between PRE and POST treatment. MAP genome equivalent estimates for PBS suspensions indicated that MAP numbers were lower in samples POST-treatment with copper ions than PRE-treatment.Conclusions: The use of copper ions resulted in a significant reduction of MAP in a liquid matrix, although some MAP survival on some occasions was observed.

Background: \ud Behaviour changes in mosquitoes from indoor to outdoor biting result in continuing risk of malaria from outdoor activities, including routine household activities and occasional social and cultural practices and gatherings. This study aimed to identify the range of social and cultural gatherings conducted outdoors and their associated risks for mosquito bites.\ud \ud Methods: \ud A cross-sectional study was conducted in four villages in the Kilombero Valley from November 2015 to March 2016. Observations, focus group discussions, and key informant interviews were conducted. The recorded data were transcribed and translated from Swahili to English. Thematic content analysis was used to identify perspectives on the importance of various social and cultural gatherings that incidentally expose people to mosquito bites and malaria infection.\ud \ud Results: \ud Religious, cultural and social gatherings involving the wider community are conducted outdoors at night till dawn. Celebrations include life course events, religious and cultural ceremonies, such as Holy Communion, weddings, gatherings at Easter and Christmas, male circumcision, and rituals conducted to please the gods and to remember the dead. These celebrations, at which there is minimal use of interventions to prevent bites, contribute to individual satisfaction and social capital, helping to maintain a cohesive society. Bed net use while sleeping outdoors during mourning is unacceptable, and there is minimal use of other interventions, such as topical repellents. Long sleeve clothes are used for protection from mosquito bites but provide less protection.\ud \ud Conclusion: \ud Gatherings and celebrations expose people to mosquito bites. Approaches to prevent risks of mosquito bites and disease management need to take into account social, cultural and environmental factors. Area specific interventions may be expensive, yet may be the best approach to reduce risk of infection as endemic countries work towards elimination. Focusing on single interventions will not yield the best outcomes for malaria prevention as social contexts and vector behaviour vary.

Repeats-in-toxin leukotoxin (LtxA) produced by the oral bacterium Aggregatibacter actinomycetemcomitans kills human leukocytes in a lymphocyte function-associated antigen 1 (LFA-1, integrin α(L)/β(2))-dependent manner, although the mechanism for this interaction has not been identified. The LtxA internalisation by LFA-1-expressing cells was explored with florescence resonance energy transfer (FRET) microscopy using a cell line that expresses LFA-1 with a cyan fluorescent protein-tagged cytosolic α(L) domain and a yellow fluorescent protein-tagged β(2) domain. Phorbol 12-myristate 13-acetate activation of LFA-1 caused transient cytosolic domain separation. However, addition of LtxA resulted in an increase in FRET, indicating that LtxA brings the cytosolic domains closer together, compared with the inactive state. Unlike activation, this effect was not transient, lasting more than 30 min. Equilibrium constants of LtxA binding to the cytoplasmic domains of both α(L) and β(2) were determined using surface plasmon resonance. LtxA has a strong affinity for the cytosolic domains of both the α(L) and β(2) subunits (K(d) = 15 and 4.2 nM, respectively) and a significantly lower affinity for the cytoplasmic domains of other integrin α(M), α(X), and β(3) subunits (K(d) = 400, 180, and 230 nM, respectively), used as controls. Peptide fragments of α(L) and β(2) show that LtxA binds membrane-proximal domain of α(L) and intermediate domain of β(2).

Background Understanding the causes of inpatient mortality in hospitals is important for monitoring the population health and evidence-based planning for curative and public health care. Dearth of information on causes and trends of hospital mortality in most countries of Sub-Saharan Africa has resulted to wide use of model-based estimation methods which are characterized by estimation errors. This retrospective analysis used primary data to determine the cause-specific mortality patterns among inpatient hospital deaths in Tanzania from 2006-2015. Materials and methods The analysis was carried out from July to December 2016 and involved 39 hospitals in Tanzania. A review of hospital in-patient death registers and report forms was done to cover a period of 10 years. Information collected included demographic characteristics of the deceased and immediate underlying cause of death. Causes of death were coded using international classification of diseases (ICD)-10. Data were analysed to provide information on cause-specific, trends and distribution of death by demographic and geographical characteristics. Principal findings A total of 247,976 deaths were captured over a 10-year period. The median age at death was 30 years, interquartile range (IQR) 1, 50. The five leading causes of death were malaria (12.75%), respiratory diseases (10.08%), HIV/AIDS (8.04%), anaemia (7.78%) and cardio-circulatory diseases (6.31%). From 2006 to 2015, there was a noted decline in the number of deaths due to malaria (by 47%), HIV/AIDS (28%) and tuberculosis (26%). However, there was an increase in number of deaths due to neonatal disorders by 128%. Malaria and anaemia killed more infants and children under 5 years while HIV/AIDS and Tuberculosis accounted for most of the deaths among adults. Conclusion The leading causes of inpatient hospital death were malaria, respiratory diseases, HIV/AIDS, anaemia and cardio-circulatory diseases. Death among children under 5 years has shown an increasing trend. The observed trends in mortality indicates that the country is lagging behind towards attaining the global and national goals for sustainable development. The increasing pattern of respiratory diseases, cancers and septicaemia requires immediate attention of the health system.