1. RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathways
- Author
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Sebastian Susperreguy, Lutz Birnbaumer, Karina Formoso, and Marc Freichel
- Subjects
Cell biology ,GENES ,TRPC ,lcsh:Medicine ,RNA-Seq ,Biology ,RECEPTORES ,Article ,purl.org/becyt/ford/1 [https] ,Transcriptome ,Transient receptor potential channel ,Mice ,Gene expression ,Animals ,MEDICINA ,Gene Regulatory Networks ,RNA-SEQ ,purl.org/becyt/ford/1.6 [https] ,lcsh:Science ,Gene ,PI3K/AKT/mTOR pathway ,TEJIDOS ,TRPC Cation Channels ,Mice, Knockout ,INVESTIGACION CIENTIFICA ,Multidisciplinary ,lcsh:R ,CALCIO ,Computational biology and bioinformatics ,Gene Expression Regulation ,lcsh:Q ,Signal transduction ,Metabolic Networks and Pathways ,Signal Transduction - Abstract
The seven-member transient receptor potential canonical genes (TRPC1-7) encode cation channels linked to several human diseases. There is little understanding of the participation of each TRPC in each pathology, considering functional redundancy. Also, most of the inhibitors available are not specifc. Thus, we developed mice that lack all of the TRPCs and performed a transcriptome analysis in eight tissues. The aim of this research was to address the impact of the absence of all TRPC channels on gene expression. We obtained a total of 4305 diferentially expressed genes (DEGs) in at least one tissue where spleen showed the highest number of DEGs (1371). Just 21 genes were modifed in all the tissues. Performing a pathway enrichment analysis, we found that many important signaling pathways were modifed in more than one tissue, including PI3K (phosphatidylinositol 3-kinase/protein kinase-B) signaling pathway, cytokine-cytokine receptor interaction, extracellular matrix (ECM)-receptor interaction and circadian rhythms. We describe for the frst time the changes at the transcriptome level due to the lack of all TRPC proteins in a mouse model and provide a starting point to understand the function of TRPC channels and their possible roles in pathologies. Fil: Formoso, Karina. Pontificia Universidad Católica Argentina "Santa María de los Buenos Aires". Instituto de Investigaciones Biomédicas. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Investigaciones Biomédicas; Argentina Fil: Susperreguy, Sebastian. Pontificia Universidad Católica Argentina "Santa María de los Buenos Aires". Instituto de Investigaciones Biomédicas. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Investigaciones Biomédicas; Argentina Fil: Freichel, Marc. Universität Heidelberg; Alemania Fil: Birnbaumer, Lutz. Pontificia Universidad Católica Argentina "Santa María de los Buenos Aires". Instituto de Investigaciones Biomédicas. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Investigaciones Biomédicas; Argentina
- Published
- 2020