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Background Intestinal parasitic infections are amongst the most common infections worldwide and have been identified as one of the most significant causes of morbidity and mortality among disadvantaged populations. This comparative cross-sectional study was conducted to assess the prevalence of intestinal protozoan infections and to identify the significant risk factors associated with intestinal parasitic infections in Laghouat province, Southern Algeria. Methods A comparative cross-sectional study was conducted, involving 623 symptomatic and 1654 asymptomatic subjects. Structured questionnaires were used to identify environmental, socio demographic and behavioral factors. Stool specimens were collected and examined using direct wet mount, formalin-ether concentration, xenic in vitro culture and staining methods. Results A highly significant difference of prevalence was found between symptomatic (82.3%) and asymptomatic subjects (14.9%), with the majority attributable to protozoan infection. The most common species in the symptomatic subjects were Blastocystis spp. (43.8%), E. histolytica/dispar (25.4%) and Giardia intestinalis (14.6%) and more rarely Enterobius vermicularis (02.1%), Teania spp. (0.6%) and Trichuris trichiura (0.2%), while in asymptomatic population Blastocystis spp. (8%), Entamoeba coli (3.3%) and Entamoeba histolytica/dispar (2.5%) were the most common parasites detected with no case of helminth infection. Multivariate log-linear analysis showed that contact with animals was the main risk factor for transmission of these protozoa in both populations. Furthermore, living in rural areas was significantly associated with combined protozoan infection in the asymptomatic population, whereas, in the symptomatic population an increasing trend of protozoan infection was detected in the hot season. In addition, Blastocystis spp. and G. intestinalis infection were found to be associated with host sex and contact with animals across the study period. Conclusions Based on these results, several strategies are recommended in order to effectively reduce these infections including good animal husbandry practices, health education focused on good personal hygiene practices and adequate sanitation.

Pathways through which phenotypic variation among individuals arise can be complex. One assumption often made in relation to intraspecific diversity is that the stability or predictability of the environment will interact with expression of the underlying phenotypic variation. To address biological complexity below the species level, we investigated variability across years in morphology and annual growth increments between and within two sympatric lake charr Salvelinus namaycush ecotypes in Rush Lake, USA. A rapid phenotypic shift in body and head shape was found within a decade. The magnitude and direction of the observed phenotypic change were consistent in both ecotypes, which suggests similar pathways caused the variation over time. Over the same time period, annual growth increments declined for both lake charr ecotypes and corresponded with a consistent phenotypic shift of each ecotype. Despite ecotype‐specific annual growth changes in response to winter conditions, the observed annual growth shift for both ecotypes was linked, to some degree, with variation in the environment. Particularly, a declining trend in regional cloud cover was associated with an increase of early‐stage (ages 1–3) annual growth for lake charr of Rush Lake. Underlying mechanisms causing changes in growth rates and constrained morphological modulation are not fully understood. An improved knowledge of the biology hidden within the expression of phenotypic variation promises to clarify our understanding of temporal morphological diversity and instability.

Background Burns are injuries that lie on the skin or other organic tissues caused by exposures to the heat, electricity, chemicals or ionizing radiation. The present study was carried out to record temporal changes in the cell population and wound healing-related gene expression in rats with deep partial-thickness burn. Methods Burn wound was induced on the dorsal part of Sprague-Dawley rats using temperature-regulated 20-mm wide aluminum head heating device. Animals were then sacrificed on days three, seven, 11, 14 and 21 post-burn, respectively. Half of the wounded skin tissues were dissected and fixed in buffered neutral formalin for Hematoxylin & Eosin (H&E) staining, and the other half were cut off and stored in − 20 °C for real-time PCR analyses. Results The number of adipose cells was found to be maximal on the 3rd day post-burn, and it gradually decreased over time and completely disappeared on day 11 post-burn. The maximum number of neutrophils were found to be on the 3rd and 14th day post-burn, while the maximum number of myofibroblasts were found on the 11th day post-burn. The number of lymphocytes did not change too much during the whole healing process. At the gene expression level, the expression pattern of inflammation-related genes including IL-6, TNF-α and iNOS were similar, which was found to be increased from day 3 to day 11 and decreased thereafter. Angiogenesis related genes including both VEGF-A and TGF-β1 showed a same expression pattern, both of which were slightly increased from day 3 to day 14 and smoothly decreased on day 21 post-burn. Matrix re-modeling related genes including MMP-2, TIMP-2 and Collagen-1 changed over time synchronously, where they all persistently increased from day 3 till day 14, then slightly declined on day 21 post-burn. Conclusion The present study revealed the changes in the cell population and expression profile of wound healing-related genes in deep partial-thickness burn, which could provide a cellular and genomic basis for the future research of burn injuries.

Microbial communities are known to be sensitive indicators for water pollution and biomonitoring assessment. In this study, we aimed at observation of microbial abundance and community composition in the mountain river Morávka. The results showed temporal and spatial changes in total cell abundance (TCA). TCA reached 105–106 cells/ml, increasing values were detected towards the mouth with maxima in summer and autumn months. Out of Eubacteria Betaproteobacteria and Cytophaga-Flavobacterium were found to predominate, while Archaea represented only 4.8 % of TCA. Along the flow three distinct patterns of phylogenetic groups' share were revealed related to increasing pollution. Microbial community composition was found to be most significantly dependent on the elevation and the sampling date. Moreover, environmental variables like O2 saturation, water temperature, trophic potential and pH influenced microbial community as well. Statistical analyses showed significant seasonal (23.5 %) and spatial (4.7 %) changes in microbial community composition.

Basal stem rot (BSR) disease of oil palm (Elaeis guineensis Jacq.) spreads through the contact of the plant roots with Ganoderma boninense (G. boninense) Pat. inoculum in the soil. The soil properties can be altered by growing seedlings with or without G. boninense inoculum. In the early stage of infection, the symptoms are difficult to detect. Therefore, an understanding of the environmental soil conditions of the plant is crucial in order to indicate the presence of the fungus. This paper presents an analysis of the temporal changes of the soil properties associated with the G. boninense infection in oil palm seedlings. A total of 40 seedlings aged five months were used in the study, comprising 20 inoculated (infected seedlings: IS) and 20 control (healthy seedlings: HS) seedlings. The seedlings were grown in a greenhouse for six months (24 weeks) under a controlled environmental temperature and humidity. The data of the soil moisture content (MC in %), electrical conductivity (EC in µS/cm), and temperature (T in °C) for each seedling were collected daily using three MEC10 soil sensors every hour and then transferred to the ThingSpeak cloud using a 3G Internet connection. Based on the results, the mean MC and EC showed a decreasing trend, while the mean T showed an increasing trend in both HS and IS during the six-month monitoring period. The overall mean in both the monthly and weekly analysis of MC, EC, and T was higher in HS than IS. However, in the monthly analysis, a Student’s t-test at a 5% significance level showed that only the soil MC and EC were significantly different between HS and IS, while in the weekly analysis, HS was significantly different from IS in all parameters. This study suggests that soil MC, EC, and T can be used as indicators of the G. boninense infection, especially for the weekly data.

International audience; Species of the genus Carpobrotus, or iceplant, are succulent mat‐forming perennial herbs often introduced for soil stabilization. They are common in coastal environments and may thus threaten island biodiversity. While their effects are well known on soils, plant communities and associated fauna, the effects of Carpobrotus control on vegetation recovery is poorly documented. The aim of the paper is to describe plant community trajectories after Carpobrotus removal.

Background Coronavirus disease 2019 (COVID-19) is caused by severe acute respiratory syndrome coronavirus 2, and outbreaks have occurred worldwide. Laboratory test results are an important basis for clinicians to determine patient condition and formulate treatment plans. Methods Fifty-two thousand six hundred forty-four laboratory test results with continuous values of adult inpatients who were diagnosed with COVID-19 and hospitalized in the Fifth Hospital in Wuhan between 16 January 2020 and 18 March 2020 were compiled. The first and last test results were compared between survivors and non-survivors with variance test or Welch test. Laboratory test variables with significant differences were then included in the temporal change analysis. Results Among 94 laboratory test variables in 82 survivors and 25 non-survivors with COVID-19, white blood cell count, neutrophil count/percentage, mean platelet volume, platelet distribution width, platelet-large cell percentage, hypersensitive C-reactive protein, procalcitonin, D-dimer, fibrin (ogen) degradation product, middle fluorescent reticulocyte percentage, immature reticulocyte fraction, lactate dehydrogenase were significantly increased (P P P P Conclusions By the comprehensive usage of the laboratory markers with different temporal changes, patients with a high risk of COVID-19-associated death or progression from mild to severe disease might be identified, allowing for timely targeted treatment.

Temporal changes in body size have been documented in a number of vertebrate species, with different contested drivers being suggested to explain these changes. Among these are climate warming, resource availability, competition, predation risk, human population density, island effects and others. Both life history traits (intrinsic factors such as lifespan and reproductive rate) and habitat (extrinsic factors such as vegetation type, latitude and elevation) are expected to mediate the existence of a significant temporal response of body size to climate warming but neither have been widely investigated. Using examples of rodents, we predicted that both life history traits and habitat might explain the probability of temporal response using two tests of this hypothesis. Firstly, taking advantage of new data from museum collections spanning the last 106 years, we investigated geographical and temporal variation in cranial size (a proxy for body size) in six African rodent species of two murid subfamilies (Murinae and Gerbillinae) of varying life history, degree of commensality, range size, and habitat. Two species, the commensal Mastomys natalensis, and the non-commensal Otomys unisulcatus showed significant temporal changes in body size, with the former increasing and the latter decreasing, in relation with climate warming. Commensalism could explain the increase in size with time due to steadily increasing food availability through increased agricultural production. Apart from this, we found no general life history or habitat predictors of a temporal response in African rodents. Secondly, in order to further test this hypothesis, we incorporated our data into a meta-analysis based on published literature on temporal responses in rodents, resulting in a combined dataset for 50 species from seven families worldwide; among these, 29 species showed no significant change, eight showed a significant increase in size, and 13 showed a decline in size. Using a binomial logistic regression model for these metadata, we found that none of our chosen life history or habitat predictors could significantly explain the probability of a temporal response to climate warming, reinforcing our conclusion based on the more detailed data from the six African species.

Background Aedes japonicus japonicus has expanded beyond its native range and has established in multiple European countries, including Belgium. In addition to the population located at Natoye, Belgium, locally established since 2002, specimens were recently collected along the Belgian border. The first objective of this study was therefore to investigate the origin of these new introductions, which were assumed to be related to the expansion of the nearby population in western Germany. Also, an intensive elimination campaign was undertaken at Natoye between 2012 and 2015, after which the species was declared to be eradicated. This species was re-detected in 2017, and thus the second objective was to investigate if these specimens resulted from a new introduction event and/or from a few undetected specimens that escaped the elimination campaign. Methods Population genetic variation at nad4 and seven microsatellite loci was surveyed in 224 and 68 specimens collected in Belgium and Germany, respectively. German samples were included as reference to investigate putative introduction source(s). At Natoye, 52 and 135 specimens were collected before and after the elimination campaign, respectively, to investigate temporal changes in the genetic composition and diversity. Results At Natoye, the genotypic microsatellite make-up showed a clear difference before and after the elimination campaign. Also, the population after 2017 displayed an increased allelic richness and number of private alleles, indicative of new introduction(s). However, the Natoye population present before the elimination programme is believed to have survived at low density. At the Belgian border, clustering results suggest a relation with the western German population. Whether the introduction(s) occur via passive human-mediated ground transport or, alternatively, by natural spread cannot be determined yet from the dataset. Conclusion Further introductions within Belgium are expected to occur in the near future, especially along the eastern Belgian border, which is at the front of the invasion of Ae. japonicus towards the west. Our results also point to the complexity of controlling invasive species, since 4 years of intense control measures were found to be not completely successful at eliminating this exotic at Natoye. Graphical Abstract

Minerals play important roles in infant growth and development, even though they only make up to 0.2 g% of the mature breast milk contents. Limited studies examined the association between maternal dietary intake and breast milk mineral contents in a temporal manner. Twenty Malaysian Malay postpartum mothers were recruited by either convenience or snow balling sampling from the urban lower middle income residential areas. Dietary intake of the subjects was obtained by 24-hour recall during each breast milk collection. Adequacy of maternal mineral intake was compared with the latest Recommended Nutrient Intake for Malaysia. Each of the subject provided breast milk samples for three times (T1, T2, and T3) at consecutive 2-week intervals. Breast milk concentrations of selected macro- and micro-minerals, including Ca, P, K, Na, Mg, Fe, Zn, Cu, Mn, Se, I, Cr and Mo were determined by inductively coupled plasma mass spectrometry (ICP-MS). Subjects were aged 31.4 ± 6.1 years with a majority (60 %) having post-secondary school/ college education. While maternal intake of macro-minerals, Ca, P, K and Mg, did not display a significant temporal changes from T1 to T3, the intake of micro- minerals, Cu, Mn and I decreased significantly over time from T1 to T3. Breast milk K, Fe, Zn and Cu concentrations showed a significant decreased with the progression of lactation from transitional (2–3 weeks) to established stage (>8-12 weeks). Significant correlations were established between maternal intake of K, Na, Fe and Se and their respective concentrations in breast milk in the present study. This case study revealed an inadequate maternal intake of several key micro- minerals (Cu, Mn, I) among the postpartum Malay mothers and a decreasing concentrations of certain essential minerals (K, Fe, Zn and Cu) in breast milk with lactation stage.

Halophila stipulacea is a small tropical seagrass species native to the Red Sea. Due to its invasive character, there is growing interest in understanding its ability to thrive in a broad range of ecological niches. We studied temporal (February 2014 and July 2014), depth (5, 9, 18 m) and spatial (NB and SB) related dynamics of H. stipulacea meadows in the northern Gulf of Aqaba. We evaluated changes in density, morphometry, biomass, and biochemical parameters alongside the reproductive effort. In both sites, maximal growth and vegetative performance occurred in the summer with a marked increase of 35% in shoot density and 18% in biomass; PAR reduction with season and depth induced a significant increase of 28% in leaf area. Sexual reproduction efforts were only observed in July, and the density of plants carrying male or female flowers decreased significantly with depth. The favorable growth responses of H. stipulacea plants observed in the N-enriched NB site suggests their capacity to acclimate to human-disturbed nearshore environments.

The diet of predators is influenced by local conditions (e.g., characteristics of habitat and microhabitat, seasonality, prey availability) and therefore tends to change across time. In this paper, the diet composition of the barn owl (Tyto alba) in Italy was studied using a meta-analysis of 47 articles (covering 212 independent sites, with multiple surveys for some sites, thus giving a total of 290 datasets) between 1972 and 2012. General Linear Models were used to assess the effects of year and study site on four distinct diversity indices (species richness, dominance, Shannon-Weaver diversity and equitability). The year of data collection was a factor used in all analyses. Year had a greater effect than study site on all diversity indices, but the effect was not significant for the evenness and the species richness. However, dietary dominance increased significantly over the years, the Shannon-Weaver index of diversity decreased significantly over time, and equitability also decreased significantly over time. The relative abundance of various species of rodents did not increase/decrease progressively over the years, although there were inter-annual fluctuations. On the other hand, the relative abundance of insectivores tended to decrease with time, and there was a significantly negative correlation between year and the frequency of consumption of Sorex spp. and a marginally significant negative correlation for Crocidura leucodon.

The spatial and temporal aspects of the habitat suitability of the European Souslik (Spermophilus citellus L.) in an area in Sredna Gora Mountain (Bulgaria) was investigated. Data from Landsat satellite imagery were used for modelling changes in the habitat suitability of the species from 1985 till 2018. Linear Regression Analysis showed that spectral bands represent not only the spatial heterogeneity of the landcover, but also the temporal changes of two climatic parameters – monthly temperature and rainfall amount. The obtained results show that the habitat suitability of the European Souslik increased during the studied period. The methodology used here based on statistical modelingis applicable to long-term monitoring and evaluation of the role of land cover change as a result of the human activity and the climate change on the habitat suitability of the European Souslik.

A study on vascular flora of a Zn–Pb ore spoil heap of the “Orzeł Biały” mining and smelting works in Bytom, Poland, was carried out in the 2017–2018 growing seasons. The aim of this study was to: (i) present the characteristics of current vascular flora that colonizes the Zn–Pb heap, (ii) describe its dynamic tendencies and directions of changes after 15 years, and (iii) identify species that can be useful for planting as a part of biological reclamation. Ninety-two mostly native species of vascular plants, belonging to 36 families and 77 genera, were found on the examined heap. In the spectrum of life forms, hemicryptophytes prevailed over therophytes and geophytes. The most numerous ecological groups were ruderal and meadow species. As regards life strategies, highly competitive species and taxa with mixed CSR strategies dominated. The basic mode of seed dispersal was anemochory. In terms of habitat preferences, species associated with moderately light, warm, fresh, neutral, and medium fertility soil dominated in the species composition of the studied flora. In 2017–2018 compared to the 2002 growing season, statistically significant differences were found in the origin, life forms, ecological groups, life strategies, mode of seed dispersal of species and their habitat preferences relative to light, temperature, pH, and productivity. Frequently recorded pseudometallophytes (Agrostis capillaris, Cardaminopsis arenosa, Daucus carota, Deschampsia caespitosa, Leontodon hispidus, Plantago lanceolata, Silene vulgaris, Rumex acetosa) can be used for planting as part of biological reclamation of the area.

We surveyed ladybirds (Coleoptera: Coccinellidae) in 10 stands of Scots pine (Pinus sylvestris), all monoculture stands 5-100 years old, in western Slovakia, Central Europe, over two successive periods, October 2013 - March 2014 and October 2014 - March 2015. The winter in each period was exceptionally mild. Ladybirds were collected from the lower branches of pine trees using beating trays and were present in 61% of the 1040 samples (one sample containing ladybirds from 20 branches, 1 m long each). In total 3965 individuals of 20 species were recorded. Non-conifer dwelling species associated with broadleaved trees or herbaceous plants prevailed (45% of species), followed by conifer specialists (40%) and generalists (15%). Although 13 species were found at least in one winter month, December, January or February, only four of them, Exochomus quadripustulatus, Coccinella septempunctata, Harmonia axyridis and Hippodamia variegata, were recorded continually during both winters. The number of species, the abundance of all ladybirds and the abundance of dominant species (E. quadripustulatus, C. septempunctata and H. axyridis) decreased from late autumn towards winter and remained lowest during this most adverse time of the year for ladybirds. Overwintering species assemblages of ladybirds changed over time and varied with age of pine stand. Our results suggest that Scots pine in Central Europe supports species rich assemblages of ladybirds from late autumn to early spring and, being widely distributed, it could be suited to winter surveying of ladybirds at large spatial scales to reveal behavioural and ecological responses of species to changing weather or different climates.

Question: The study of temporal variation of plant–plant interactions has received little attention despite its importance in community dynamics. Successional processes triggered by disturbances such as fire may be determined by changes in key interactions between dominant woody plants. Taking advantage of a 95-yr-old post-fire natural experiment we assessed temporal shifts in post-fire interactions between woody resprouters and the obligate seeder tree Austrocedrus chilensis. We hypothesized that during the initial post-fire period, resprouters may facilitate A. chilensis trees' growth, while at advanced time since fire the interaction between A. chilensis trees and resprouters may turn to competition. Location: Northwestern Río Negro province, Patagonia, Argentina. Methods: We selected pairs of A. chilensis trees and woody resprouters growing 80 cm apart (growing in association) and both A. chilensis trees and resprouters growing at more than 3 m apart from any individual (controls). We cored all individuals, measured ring widths and calculated basal area increment (BAI) and the relative interaction index (RII). Results: During mid-early stages of post-fire succession, A. chilensis trees' BAI was suppressed for at least 15 yr when growing in association with resprouters, and accordingly displayed a negative RII. Strikingly, during the same period, resprouters associated with A. chilensis trees showed higher BAI than control resprouters, and a positive RII. At advanced time since fire, RII showed a neutral interaction, and according to model estimations, the BAI of A. chilensis trees in association may eventually exceed control BAI whereas resprouters' BAI in association may decline earlier than that of the controls. Interestingly, A. chilensis trees and resprouters' growth was less correlated with climate when growing in association than when growing in isolation. Conclusions: Competition of resprouters over A. chilensis treess' growth during intermediate post-fire stages may be slowing the successional process. However, the association appears to be at the same time mutually beneficial as it buffers against adverse climatic conditions. Studying how plant growth varies along the succession is essential to understand community functioning and to predict possible alterations associated with changes in disturbance regimes due to climate change. Fil: Landesmann, Jennifer Brenda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina Fil: Gowda, Juan Janakiram Haridas. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina Fil: Kitzberger, Thomas. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina

The objective of this study was to understand the dynamics of an Upper Montane Mixed Ombrophilous Forest in the municipality of Painel, Santa Catarina, Brazil, where low-level but chronic disturbances, such as extensive cattle grazing and exploitation of non-timber products, are common practices. In 2008, permanent plots were allocated and all tree species with circumference at breast height (CBH) equal to or greater than 15.7 cm were measured. A second survey was conducted in 2014 by the same methodology. Mortality, recruitment, and basal area gain and loss rates were then determined. The tree species were classified into regeneration guilds and proportion tests were conducted to verify the associations between dynamics patterns and guilds. The community has shown a 2.3%.year-1 average mortality rate, a 2.2%.year-1 average recruitment rate, a 3.0%.year-1 average basal area gain rate and a 1.8%.year-1 average basal area loss rate. Species number has decreased from 55 to 48. Regeneration guilds have shown different dynamics patterns, where the pioneers have shown the greatest mortality (19.9%) and recruitment (15.6%) proportion and reduced representativeness in shade-tolerant climax species. Therefore, floristic impoverishment and higher representativeness reduction of late species have been observed. We have concluded that despite disturbances do not result in structural deterioration, they have the potential to slow the succession process and cause a floristic homogenization in the area under study. RESUMO O objetivo do presente trabalho foi compreender a dinâmica de um fragmento de Floresta Ombrófila Mista Alto-Montana, no município de Painel, em Santa Catarina, onde perturbações de baixa intensidade, porém crônicas, tais como pastoreio extensivo e exploração de produtos não-madeireiros, são práticas comuns. Em 2008, foram instaladas parcelas permanentes, onde foram mensurados todos os indivíduos arbóreos com circunferência a altura do peito (CAP) igual ou superior a 15,7 cm. Em 2014, foi realizado o segundo inventário da comunidade arbórea, adotando-se a mesma metodologia. Foram calculadas as taxas de mortalidade, recrutamento e ganho e perda em área basal. Os indivíduos inventariados foram classificados em guildas de regeneração e foram realizados testes de proporção a fim de verificar a associação entre os padrões de dinâmica e as guildas. Para a comunidade, as taxas médias de mortalidade e recrutamento foram de 2,3%.ano-1 e 2,2%.ano-1, respectivamente, e as taxas médias de ganho e perda em área basal foram de 3,0%.ano-e 1,8%.ano-1, respectivamente. Ocorreu a redução de espécies, passando de 55 para 48. As guildas de regeneração apresentaram diferentes padrões de dinâmica, com as pioneiras com maior proporção de mortalidade (19,9%) e recrutamento (15,6%) e com redução da representatividade do grupo de clímax tolerante à sombra. Desta forma, observou-se um empobrecimento florístico e maior redução na representatividade de espécies tardias. Conclui-se que na área de estudo, apesar das perturbações não resultarem em uma degradação estrutural, essas têm o potencial de retardar o processo de sucessão e causar uma homogeneização florística.

Neste trabalho, objetivou-se descrever a dinâmica estrutural da comunidade arbórea de um fragmento de floresta semideciduifólia (Mata do Capivari), situado em Lavras, Minas Gerais. O estudo teve como base três inventários realizados no período de onze anos (1997, 2003 e 2008) em 28 parcelas permanentes de 20×20 m onde foi registrada a espécie e a medida de diâmetro à altura do peito (DAP) das árvores com DAP ≥ 5 cm, incluindo sobreviventes, mortas ou recrutas. A hipótese foi de que os padrões de dinâmica do primeiro período (1997 a 2003) persistiram no segundo (2003 a 2008). Os descritores da dinâmica foram taxas de mortalidade e recrutamento de árvores individuais (dinâmica demográfica), taxas de ganho e perda de área basal (dinâmica da biomassa) e as respectivas taxas de mudança líquida. Entre 2003 e 2008, a taxa de mortalidade, de 3,30%.ano-1, superou a de recrutamento, de 2,78%.ano-1. A taxa de ganho em área basal foi de 2,72%.ano-1, pouco inferior à de perda, de 2,98%.ano-1. De maneira geral, os padrões repetiram os do primeiro período (1998 a 2003), com persistência de um lento declínio demográfico, particularmente concentrado nas proximidades do rio, e uma área basal próxima da estabilidade, ao contrário da alta encosta, onde ocorreu uma significativa expansão. Comparativamente, a Mata do Capivari é uma das mais estáveis entre as estudadas na região, a despeito da persistente interferência humana The present contribution aimed at describing the structural dynamics of the tree community of a forest fragment of seasonal semi-deciduous forest (Mata do Capivari) situated in Lavras, Minas Gerais State, South-eastern Brazil. The study was based on three surveys carried out during an 11-year period (1997, 2003 and 2008) in 28 20×20 m permanent plots where records were made of the species and diameter at breast height (dbh) of trees with dbh ≥ 5 cm, including survival, mortality and recruits. The hypothesis was that the patterns of dynamics found in the first interval (1997-2003) persisted in the second (2003-2008). The descriptors of dynamics were the rates of mortality and recruitment of individual trees (dynamics of demography), rates of gain and loss of tree basal area (dynamics of biomass), and respective net change rates. Between 2003 and 2008, the mortality rate, of 3.30%.yr-1, surpassed the recruitment rate, of 2.78%.yr-1. The gain rate in basal area was 2.72%.yr-1, only a little inferior to the loss rate, of 2.98%.yr-1. In general, these patterns repeated those of the first interval (1998-2003), with a persisting slow demographic decline, particularly concentrated near the river, and a nearly stable basal area. Comparatively speaking, the Mata do Capivari is one of the most stable among those studied in the region despite persistent human interference.

Question(s) Do the effects of grazing and fertilisation on taxonomic and functional diversity follow the dynamic equilibrium model? Location Long-term observatory of permanent upland grasslands in Massif-central, France. Methods Over eight years, we monitored vegetation changes in 24 experimental plots in two productive grasslands after modification of grazing intensity (including abandonment) or fertilisation regime (including cessation of fertilisation). Botanical surveys and plant trait measurements (leaf dry matter content, LDMC; specific leaf area, SLA and reproductive plant height) were performed within each plot. We analysed taxonomic responses using principal response curves and functional responses from observed temporal changes of community-weighted mean traits and Rao index. Results Grazing abandonment led to significant reductions in species richness and functional convergence toward taller plants with higher LDMC in both grasslands. Intermediate and high grazing pressure did not differ but showed strong variations in taxonomic diversity between-years. Changes in functional vegetation structure were mostly driven by species turnover and weakly influenced by intraspecific trait variability. Community responses to modified fertilization regime were more complex with strong differences between the two mown grasslands. Species richness did not change significantly although species evenness decreased in the highly-fertilised treatments (NPK), particularly in the most productive grassland. Here, functional changes were largely driven by intraspecific trait variability. Both functional divergence and convergence were found for different traits. In NPK, grassland assemblages converged toward taller plants while SLA diverged. Conclusions In our upland study system, the different components of grassland diversity responded differently, in terms of direction or rate of change and mostly under extreme modifications of management. Following abandonment, the observed patterns suggest a prominent and consistent role of competitive exclusion as expected under the DEM. However, our findings also suggest the role of additional processes especially the importance of niche differentiation for our mown grassland under NPK. Timing and net effects of these combined assembly drivers were sensitive to even slight differences in initial productivity and species composition. This article is protected by copyright. All rights reserved.

Sandy beaches are natural dynamic ecosystems, which are becoming worldwide increasingly disturbed by intensive human direct use, coastal development and erosive evolution. In this study, we have examined whether ten years of potential increased human pressures have resulted in significant changes in the macrofaunal assemblages’ structure and composition of two mesotidal sandy beaches (Cabedelo – urban beach, and Quiaios – rural beach) on the European Atlantic coast (Portugal). Seasonal macrofauna collections were performed at both beaches in two different periods, one in 1999–2000 and another in 2010–2011. The physical variables did not change significantly in both beaches throughout the studied periods, however, the urban beach was subject to an increase of human pressures (tourism and shoreline modifications) over the 10-years interval considered when compared with the rural beach. The univariate community descriptors (total density, species richness and diversity) did not differ significantly among periods for the rural beach. In contrast, temporal differences were found at the most urbanised beach, principally regarding the abundances of the amphipod Talitrus saltator and the isopod Tylos europaeus, two of the most abundant species at both beaches. PERMANOVA tests enhanced these temporal variations and the SIMPER analysis attributed to these species the main differences found between periods in this beach. Since the physical environment was similar in both periods, the ecological changes were most likely attributed to the increased human pressures observed at the urban beach. Nevertheless, this study highlights the need of further robust and effective impact assessments and long-term studies to better discern between natural and human induced changes on sandy beaches. This research was supported by FCT (Fundação para a Ciência e Tecnologia) through a PhD Grant awarded to Ana Filipa Bessa (SFRH/BD/64929/2009), and by the project PEst-C/MAR/UI0284/2011, funded by FCT.

Brucellosis is a global zoonotic bacterial disease. It is also an ever-increasing public health concern, particularly in endemic regions such as Kurdistan region in Middle East. Samples of meat juice were screened for anti-Brucella antibodies via Rose Bengal Test (RBT) and ELISA from January to June 2018. Bacteriological isolation of Brucella sp. from meat samples was also performed. The overall prevalence of bovine brucellosis is 7.7%, 6.6%, and 4.9% by RBT, ELISA, and culture-based test respectively. Based on sensitivity and specificity, ELISA outperforms RBT in comparison to culture results as the gold standard test. Nonetheless, both tests showed good efficiency in comparison to culture approach. In terms of temporal changes of brucellosis rate, spring progress is strongly associated (r²=0.96) with increase in seroprevalence. In conclusion, the prevalence of bovine brucellosis in Erbil city is alarming. Countermeasures should be taken to mitigate the economic losses and transmission to human.

International audience; Ectomycorrhizae create a multitrophic ecosystem formed by the association between tree roots, mycelium of the ectomycorrhizal fungus, and a complex microbiome. Despite their importance in the host tree's physiology and in the functioning of the ectomycorrhizal symbiosis, detailed studies on ectomycorrhiza-associated bacterial community composition and their temporal dynamics are rare. Our objective was to investigate the composition and dynamics of Tuber melanosporum ectomycorrhiza-associated bacterial communities from summer to winter seasons in a Corylus avellana tree plantation. We used 16S ribosomal RNA (rRNA)-based pyrosequencing to compare the bacterial community structure and the richness in T. melanosporum's ectomycorrhizae with those of the bulk soil. The T. melanosporum ectomycorrhizae harbored distinct bacterial communities from those of the bulk soil, with an enrichment in Alpha- and Gamma-proteobacteria. In contrast to the bacterial communities of truffle ascocarps that vastly varies in composition and richness during the maturation of the fruiting body and to those from the bulk soil, T. melanosporum ectomycorrhiza-associated bacterial community composition stayed rather stable from September to January. Our results fit with a recent finding from the same experimental site at the same period that a continuous supply of carbohydrates and nitrogen occurs from ectomycorrhizae to the fruiting bodies during the maturation of the ascocarps. We propose that this creates a stable niche in the ectomycorrhizosphere although the phenology of the tree changes.

10 pages, 4 figures, 2 tables, Two species of benthopelagic deep-water crustaceans, the suprabenthic mysid Boreomysis arctica and the bathypelagic euphausiid Nematoscelis megalops were analysed in their lipidic composition, with especial emphasis on fatty acids, from specimens obtained in the north-west of Mallorca (Balearic Islands, western Mediterranean) at depths ranging between 650 and 780 m. Temporal shifts were studied seasonally, based on five cruises performed in August and November 2003, and February, April and June 2004, using a Macer-GIROQ suprabenthic sledge (0.5 mm mesh size). Evidences of omnivorous and carnivorous feeding habits were found for both species derived from their fatty acid and other lipid profiles. Boreomysis arctica showed a more varied fatty acid profile than N. megalops. This suggests that B. arctica feeds on a wider range of food sources and is a more opportunistic feeder. The high proportions of 16:1(n-7), 20:5(n-3) and 22:6(n-3) fatty acids in both species suggests a link between surface primary production and deep slope habitats, while markers such as 18:1(n-9) and the 20:1(n-9) and 22:1(n-11) fatty alcohols indicate a predatory activity, likely on calanoids. These components may arrive both via phytodetritus deposition to the seabed and by migratory movements of prey consumed by B. arctica and N. megalops close to the sea bottom. Seasonal changes in the total lipids and fatty acid composition of both species are related to the seasonal dynamics in their food sources, coupled with changes in the physiological or developmental stage of individuals. The proportion of total lipids and polyunsaturated fatty acids in the two species may be related to the different life histories of B. arctica and N. megalops. The mysid has direct development of embryos within brood pouches, so eggs with large amount of vitelum are generated and gonad is well developed. By contrast, the meso-bathypelagic euphausiids generate planktotrophic larvae, with a high number of free developmental larvae stages (from nauplius to Furcilia/Calyptopis), and eggs with poor storage of lipid compounds compared with B. arctica embryos, Thanks to all participants in the cruises IDEA (REN2002-04535-C01-02/MAR), to the crew of the RV ‘Fco. de Paula Navarro’, and to J.L. Lo´pez-Jurado and E. Massutí for on-board assistance. Thanks also to V. Papiol for her laboratory assistance. Special acknowledgements to Dr T. Madurell for her help in the research performing lipid analyses, also to the National Oceanography Centre, Southampton, NOCS/OBE, especially to Dr D. Billett, for the scientific support given to the Marie Curie Fellowship MEIF-CT-2005-010430 co-supervised by the author. Analyses were performed at the University of Liverpool; thanks are extended to the Department of Earth and Ocean Sciences, both to Dr G. Wolff and collaborators for invaluable technical support for lipid analyses. The last three coallegues above mentioned were invited to particpate in the authorship of this article

Characteristics of diversity, abundance, distribution, and ecological status of aquatic macrophytes were observed in 2000 and 2007 on a circa 4.5 km long section of the Turiec River using Kohler's method. In comparison to 2000, the total number of macrophytes in 2007 increased markedly (from 25 to 35), although only the numbers of amphi?phytes and helophytes were changed substantially. The number of hydrophytes increased from 11 to 12; an invasive, Elodea canadenis, was the only new species. The relative plant mass of hydrophytes represents the bulk of all recorded species (95 and 80% in 2000 and 2007, respectively), and it was changed for most hydrophytes. The most significant changes were detected for Myriophyllum spicatum (decrease), filamentous algae (decrease), and Potamogeton crispus (increase). In 2007, the mean mass total (MMT) sum of hydrophytes decreased from 16.46 to 14.5. On the other hand, the MMTsum of amphiphytes and helophytes doubled in value (7.4 and 14.1 in 2000 and 2007, respectively). Within hydrophytes, Batrachium species (including B. aquatile and B. trichophyllum), Myriophyllum spicatum, and Potamogeton crispus were ubiquitous (distribution ratio d > 0.5) in 2000, whereas in 2007 only Batrachium species and Potamogeton crispus were ubiquitous. At all times, Batrachium species were the most frequent species in the study area, and their abundance was relatively high (MMT> 2.5). A poor ecological status (MMP = 0.378 and MMP = 0.333 in 2000 and 2007, respectively) of the surveyed river section was found in both years, but a slight decline of quality as determined on the basis of aquatic plants was observed after 7 years.

Lake Nemi was subjected to organic pollution in the 1970s due to domestic wastes, which led to a severe eutrophication process. Local authorities consequently planned a gradual waste diversion programme completed in 1990. Comparison between data on plant-associated invertebrates in the period of maximum eutrophication (1981/82) and twenty years after the total waste diversion (2001/02) was carried out with the aim of demonstrating the performance of this littoral community for the purpose of lake recovery assessment. Following the water clarity improvement characterizing the 2001/02 period, the macrophyte community displayed an amelioration in plant diversification, an enlargement of the colonized area, and an appearance of Charales, important bioindicators of oligotrophic conditions. In complete agreement with this new situation, the invertebrate fauna extended its colonization, and the species composition and quantitative structure changed completely. A considerable increase in species richness and diversity, and significant modifications of percentages and densities of bioindicator taxa (cladocerans, gastropods and acari) showed a very appreciable recovery, which can be defined as a phase of “oligotrophication”. This trophic state is closely related to nutrient reduction in the water and enhanced by a drift of organic materials from littoral to profundal bottoms. This was due to the remarkable water level reduction of about five meters which occurred in the lake in recent times.

In the presented case study, we aim to understand the impact of an irregular shelterwood system (ISS) on the genetic diversity of European beech (Fagus sylvatica L.) firstly by comparing managed stand to old growth beech forest and secondly by comparing two successive generations in both managed and old growth stands. Studies on European beech to date have not yet investigated the effect of ISS on its genetic diversity and have rarely addressed the effect of management on the genetic diversity of successive generations. The study was conducted in two mixed beech stands in Slovenia; the unmanaged Rajhenavski Rog old-growth European beech forest reserve and beech forest in Osankarica, managed according to ISS. All 140 sampled adult trees and saplings were genotyped at 16 nuclear microsatellite loci. ISS mimics genetic processes of the old growth rather well in the studied managed stand. The comparisons of diversity measures between managed and old growth stands did not reveal any significant differences between the two for any of the cohorts; the differences between the cohorts from the same stand were not significant. The observed significant shift in allele frequencies at four loci between successive generations could not be unambiguously attributed to management. Cohorts from the same stand had similar genetic structure, but six individuals from the managed stand formed a unique cluster. No convincing evidence of the effect of ISS on genetic diversity of the studied managed beech stand was found.

Some 3100 specimens of Characeae from herbarium collections and recent sampling programmes in Switzerland were redetermined and their provenance analysed, in order to investigate historical changes in frequency, distribution and current status of the species. Altitudinal and geographic distribution patterns of 27 taxa are described in 125 km2 grid squares covering Switzerland, and an analysis was made of species richness of Characeae in different grid squares. Data were available for approximately half (117 out of 262) of the grid squares covering Switzerland, showing that the recording effort had not been uniform. The lowland was better investigated than either the hills or the mountains. And 17 taxa were categorised as rare, on the basis that they were each known from

This research was carried out to determine the macroben thic crustacean species associated with mixed eelgrass beds ( Zostera marina and Z. noltii ) occurring in the upper-infralittoral zone of the Sinop peninsula coast (the southern Black Sea, Turkey) and their bioecolological features. From June 2004 to April 2005, investigations were seasonally performed at the depths of 2-4 m at 6 different stations chosen on the Sinop peninsula coast. As a result of the study, a total of 7057 individuals belonging to 55 species and 6 orders were identified. Amphipoda was the dominant group in terms of number of species (63% of the total of orders) and number of individuals (83% of the total individuals). Among these, Ampelisca pseudospinimana had the highest dominance value with up to 1902 specimens (approximately 27%). However, Isopoda accounted for 47% of the total biomass. The species that have the highest individual biomass was isopod, Idotea balthica (35% of total biomass). According to a frequency index, 26 species were designated as constant, 13 species as common and 16 species as rare. The highest number of species (max. 26 species m -2 ) and number of individuals (2069 ind.m -2 ) were found at station 4 in fall and summer and the lowest at station 1 in winter (min. 6 species m -2 ; 8 ind. m -2 )., Bu araştırma Sinop Yarımadası kıyılarının (Güney Karadeniz, Türkiye) üst infralittoral zonunda yayılış gösteren karışık deniz çayırı yataklarının ( Zostera marina , Z. noltii ) makrobentik krustase türlerini ve biyoekolojik özelliklerini tespit etmek amacıyla yürütülmüştür. Araştırmalar Haziran 2004-Nisan 2005 tarihleri arasında Sinop Yarımadası kıyılarından seçilen 6 farklı istasyonda 2-4 m derinliklerde mevsimsel olarak gerçekleştirilmiştir. Sonuç olarak, 6 ordoya ait toplam 55 tür ile bunlara ait 7057 birey tanımlanmıştır . Amphipoda ordosu tür (% 63) ve birey sayısı bakımından (% 83) en baskın grup olup bunlardan 1902 bireyle (% 27) Ampelisca pseudospinimana en baskın türleri oluşturmaktadır. Bununla birlikte, Isopoda toplam biyomasın % 47’sini oluştu rmaktadır. Tespit edilen türler içerisinde en yüksek biyomas değeri % 35 ile Idotea balthica ’ ya aittir. Frekans indeksine göre 26 tür devamlı, 13 tür yaygın ve 16 tür de seyrek olarak tanımlanmıştır. En yüksek tür (maks. 26 tür. m -2 ) ve birey sayısı (2069 birey.m -2 ) 4 nolu istasyonda sonbahar ve yaz mevsiminde, en az tür ve birey sayısı ise 1 nolu istasyonda kış mevsiminde (min. 6 tür.m -2 ; 8 birey.m -2 ) tespit edilmiştir.

Background Release of genetically-modified (GM) or sterile male mosquitoes for malaria control is hampered by inability to assess the age and mating history of free-living male Anopheles. Methods Age and mating-related changes in the reproductive system of male Anopheles gambiae were quantified and used to fit predictive statistical models. These models, based on numbers of spermatocysts, relative size of sperm reservoir and presence/absence of a clear area around the accessory gland, were evaluated using an independent sample of mosquitoes whose status was blinded during the experiment. Results The number of spermatocysts in male testes decreased with age, and the relative size of their sperm reservoir increased. The presence of a clear area around accessory glands was also linked to age and mating status. A quantitative model was able to categorize males from the blind trial into age groups of young (≤ 4 days) and old (> 4 days) with an overall efficiency of 89%. Using the parameters of this model, a simple table was compiled that can be used to predict male age. In contrast, mating history could not be reliably assessed as virgins could not be distinguished from mated males. Conclusion Simple assessment of a few morphological traits which are easily collected in the field allows accurate age-grading of male An. gambiae. This simple, yet robust, model enables evaluation of demographic patterns and mortality in wild and released males in populations targeted by GM or sterile male-based control programmes.

It is important to detect population bottlenecks in threatened and managed species because bottlenecks can increase the risk of population extinction. Early detection is critical and can be facilitated by statistically powerful monitoring programs for detecting bottleneck-induced genetic change. We used Monte Carlo computer simulations to evaluate the power of the following tests for detecting genetic changes caused by a severe reduction in a population's effective size (N-e): a test for loss of heterozygosity, two tests for loss of alleles, two tests for change in the distribution of allele frequencies, and a test for small N-e based on variance in allele frequencies (the 'variance test'). The variance test was most powerful; it provided an 85% probability of detecting a bottleneck of size N-e = 10 when monitoring five microsatellite loci and sampling 30 individuals both before and one generation after the bottleneck. The variance test was almost 10-times more powerful than a commonly used test for loss of heterozygosity, and it allowed for detection of bottlenecks before 5% of a population's heterozygosity had been lost. The second most powerful tests were generally the tests for loss of alleles. However, these tests had reduced power for detecting genetic bottlenecks caused by skewed sex ratios. We provide guidelines for the number of loci and individuals needed to achieve high-power tests when monitoring via the variance test. We also illustrate how the variance test performs when monitoring loci that have widely different allele frequency distributions as observed in five wild populations of mountain sheep (Ovis canadensis).

This study examined the diet and trophic structure of the fish fauna, over temporal and spatial scales, as affected by the impoundment of the Iguaçu River in the region of Salto Caxias, Paraná State, Brazil. Sampling was conducted before (March 1997 - February 1998) and after the impoundment (March 1999 - February 2000), at four sampling sites. The stomach contents were analyzed by the volumetric method. The species could be organized in 10 trophic guilds: algivores, carcinophages, detritivores, herbivores, aquatic insectivores, terrestrial insectivores, invertivores, omnivores, piscivores, and planktivores; the first and last guilds were represented only in the post-impoundment period. Similarity patterns and feeding changes were summarized by a non-metric Multi-dimensional Scaling (nMDS) analysis and statistically tested by a Permutational multivariate analysis of variance (PERMANOVA). Most species showed feeding changes, except for the piscivores and detritivores. These changes were related to the temporal factor (impoundment phases), such as reduced intake of benthic organisms and allochthonous food, which were usually replaced by resources from the reservoir itself (algae, microcrustaceans, and fish), simplifying the food spectrum of the fish fauna. A different indicator of food resources (IndVal) corroborated these changes in the feeding of the species. The proportions of the trophic guilds evaluated based on the catch per unit of effort (CPUE) and tested by ANOSIM were significantly different before and after the impoundment. Herbivores and piscivores were the guilds that contributed (SIMPER) to these differences, especially the high increase in biomass of the piscivore guild after the impoundment. Variations in the abundance of trophic guilds were more directly related to changes in the feeding habits of the fish fauna than to increases in the number and biomass of the species that constitute these guilds. Neste estudo foram avaliadas a dieta e a estrutura trófica da ictiofauna em escala temporal e espacial, sob efeito do represamento do rio Iguaçu, na região de Salto Caxias, Paraná, Brasil. Para tanto, foram realizadas amostragens nas fases pré (março/97 a fevereiro/98) e pós represamento (março/99 a fevereiro/00) em quatro pontos de coleta. Os conteúdos estomacais foram avaliados pelo método volumétrico. As espécies foram organizadas em 10 guildas tróficas: algívora, carcinófaga, detritívora, herbívora, insetívora aquática, insetívora terrestre, invertívora, omnívora, piscívora e planctívora, sendo a primeira e a última representadas apenas após o represamento. Os padrões de similaridade e alterações na dieta foram sintetizados através da ordenação multidimensional não paramétrica (nMDS) e estatisticamente testados pela análise de variância permutacional (PERMANOVA). Foram constatadas alterações na dieta da maioria das espécies, com exceção das piscívoras e detritívoras. Essas alterações foram relacionadas ao fator temporal (fases do represamento), configuradas como redução no consumo de organismos bentônicos e alimentos alóctones, os quais foram geralmente substituídos por recursos provenientes do próprio ambiente (algas, microcrustáceos e peixes), simplificando o espectro alimentar. Diferentes recursos alimentares indicadores (IndVal) corroboram essas alterações na composição alimentar das espécies antes e após o represamento. As proporções na abundância (número e biomassa) das guildas tróficas avaliadas com base na captura por unidade de esforço (CPUE) e testadas pela ANOSIM foram significativamente diferentes antes e após o represamento. As guildas herbívora e piscívora foram as que mais contribuíram (SIMPER) para essas diferenças, especialmente o elevado incremento em biomassa da guilda piscívora após o represamento. As variações na abundância das guildas tróficas foram mais relacionadas às alterações no hábito alimentar da fauna de peixes, do que propriamente aos incrementos em número e em biomassa das espécies que anteriormente compunham tais guildas.

Background Natural selection and genetic drift are major forces responsible for temporal genetic changes in populations. Furthermore, these evolutionary forces may interact with each other. Here we study the impact of an ongoing adaptive process at the molecular genetic level by analyzing the temporal genetic changes throughout 40 generations of adaptation to a common laboratory environment. Specifically, genetic variability, population differentiation and demographic structure were compared in two replicated groups of Drosophila subobscura populations recently sampled from different wild sources. Results We found evidence for a decline in genetic variability through time, along with an increase in genetic differentiation between all populations studied. The observed decline in genetic variability was higher during the first 14 generations of laboratory adaptation. The two groups of replicated populations showed overall similarity in variability patterns. Our results also revealed changing demographic structure of the populations during laboratory evolution, with lower effective population sizes in the early phase of the adaptive process. One of the ten microsatellites analyzed showed a clearly distinct temporal pattern of allele frequency change, suggesting the occurrence of positive selection affecting the region around that particular locus. Conclusion Genetic drift was responsible for most of the divergence and loss of variability between and within replicates, with most changes occurring during the first generations of laboratory adaptation. We also found evidence suggesting a selective sweep, despite the low number of molecular markers analyzed. Overall, there was a similarity of evolutionary dynamics at the molecular level in our laboratory populations, despite distinct genetic backgrounds and some differences in phenotypic evolution.