16 results on '"Felipe Vinecky"'
Search Results
2. Suppression of a BAHD acyltransferase decreases p-coumaroyl on arabinoxylan and improves biomass digestibility in the model grass Setaria viridis
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Rowan A. C. Mitchell, Bruno Leite Sampaio, Thályta Fraga Pacheco, Patrícia Abrão de Oliveira Molinari, Rogério Marchiosi, Osvaldo Ferrarese-Filho, Davi Serradella Vieira, Hugo Bruno Correa Molinari, Wanderley Dantas dos Santos, Dyoni Matias de Oliveira, Polyana Kelly Martins, Norberto K.V. Monteiro, Raquel Bombarda Campanha, Ana Paula Ribeiro, Karoline Estefani Duarte, Thatiane R. Mota, Felipe Vinecky, Wagner Rodrigo de Souza, and Adilson Kenji Kobayashi
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0106 biological sciences ,0301 basic medicine ,Setaria ,Coumaric Acids ,Setaria Plant ,Biomass ,Plant Science ,Genes, Plant ,01 natural sciences ,p-Coumaric acid ,Cell wall ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Wall ,Polysaccharides ,Arabinoxylan ,Genetics ,Lignin ,Food science ,biology ,Setaria viridis ,food and beverages ,Cell Biology ,biology.organism_classification ,030104 developmental biology ,chemistry ,Acyltransferase ,Xylans ,Acyltransferases ,Metabolic Networks and Pathways ,010606 plant biology & botany - Abstract
Grass cell walls have hydroxycinnamic acids attached to arabinosyl residues of arabinoxylan (AX), and certain BAHD acyltransferases are involved in their addition. In this study, we characterized one of these BAHD genes in the cell wall of the model grass Setaria viridis. RNAi silenced lines of S. viridis (SvBAHD05) presented a decrease of up to 42% of ester-linked p-coumarate (pCA) and 50% of pCA-arabinofuranosyl, across three generations. Biomass from SvBAHD05 silenced plants exhibited up to 32% increase in biomass saccharification after acid pre-treatment, with no change in total lignin. Molecular dynamics simulations suggested that SvBAHD05 is a p-coumaroyl coenzyme A transferase (PAT) mainly involved in the addition of pCA to the arabinofuranosyl residues of AX in Setaria. Thus, our results provide evidence of p-coumaroylation of AX promoted by SvBAHD05 acyltransferase in the cell wall of the model grass S. viridis. Furthermore, SvBAHD05 is a promising biotechnological target to engineer crops for improved biomass digestibility for biofuels, biorefineries and animal feeding.
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- 2020
3. Nucleotide Diversity of the Coding and Promoter Regions of DREB1D, a Candidate Gene for Drought Tolerance in Coffea Species
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Luana Ferreira Torres, Tharyn Reichel, Dominique This, David Pot, Gabriel Sergio Costa Alves, Luciana Perreira Freire, Felipe Vinecky, Natalia Gomes Vieira, Sinara Oliveira de Aquino, Luciano Vilela Paiva, Alan Carvalho Andrade, Pierre Marraccini, Hervé Etienne, Embrapa Recursos Genéticos e Biotecnologia [Brasília], Federal University of Lavras, Amélioration génétique et adaptation des plantes méditerranéennes et tropicales (UMR AGAP), Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), UMR - Interactions Plantes Microorganismes Environnement (UMR IPME), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud]), Diversité, adaptation, développement des plantes (UMR DIADE), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), Consorcio Pesquisa Cafe, Instituto Nacional de Ciencia e Tecnologia - Cafe (Conselho Nacional de Desenvolvimento Cientifico e Tecnologico/Fundacao de Amparo a Pesquisa do Estado de Minas Gerais), and Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior/Comite Francais d'Evaluation de la Cooperation Universitaire et Scientifique avec le Bresil : 407-2012
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0106 biological sciences ,0301 basic medicine ,Résistance génétique ,Candidate gene ,Tolérance à la sécheresse ,adaptation aux changements climatiques ,Coffea ,Plant Science ,Coffee ,01 natural sciences ,Genetic diversity ,F30 - Génétique et amélioration des plantes ,Nucleotide diversity ,Haplotype ,2. Zero hunger ,Genetics ,food and beverages ,Coffea arabica ,Drought stress ,Canephora ,Drought tolerance ,Biology ,Coffea canephora ,03 medical and health sciences ,Variation génétique ,Genetic variation ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Gene ,DREB1D ,fungi ,Promoter ,Coffea eugenioides ,15. Life on land ,biology.organism_classification ,030104 developmental biology ,Gène ,13. Climate action ,H50 - Troubles divers des plantes ,010606 plant biology & botany - Abstract
International audience; Climate change is posing a major challenge to coffee production worldwide leading to a need for the development of coffee cultivars with increased drought tolerance. In several plant species, the use of DREB genes in crop improvement has achieved promising results to desiccation tolerance engineering. Recent studies reported CcDREB1D specific patterns of expression in Coffea canephora and functional evidence of this gene involvement in drought stress responses. However, knowledge on natural diversity of this gene is largely unknown. In this context, this study aimed at evaluating the sequence variability of the DREB1D gene in several Coffea genotypes. Nucleotide variation in promoters and coding regions of this gene were evaluated in a population consisting of 38 genotypes of C. canephora, C. arabica and C. eugenioides, most of them characterized by different phenotypes (tolerance vs. susceptibility) in relation to drought. The genetic diversity of the loci revealed different haplotypes for the promoter and coding regions. In particular, our findings suggest association between drought tolerance and the genetic variations on DREB1D promoter regions, but not with those from its corresponding coding regions. Gene expression studies revealed up-regulated expression of DREB1D gene upon drought mainly in leaves of drought-tolerant clones of C. canephora, and in response to drought, high, and low temperatures in leaves of C. arabica, suggesting a key role of this gene in coffee responses to abiotic stress.
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- 2018
4. Improved Genetic Transformation of Sugarcane (Saccharum spp.) Embryogenic Callus Mediated by Agrobacterium tumefaciens
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Polyana Kelly Martins, Thiago Jonas Nakayama, Bárbara Andrade Dias Brito da Cunha, Adilson Kenji Kobayashi, Ana Paula Ribeiro, Marcos Fernando Basso, L. J. Cançado, Wagner Rodrigo de Souza, Raphael Augusto das Chagas Noqueli Casari, Thaís Ribeiro Santiago, Patrícia Abrão de Oliveira, Nelson Geraldo de Oliveira, Geraldo Magela de Almeida Cançado, Silvana Aparecida Creste Dias de Souza, Carlos Antônio Ferreira de Sousa, Hugo Bruno Correa Molinari, and Felipe Vinecky
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0106 biological sciences ,0301 basic medicine ,biology ,Agrobacterium ,fungi ,food and beverages ,Bialaphos ,General Medicine ,Agrobacterium tumefaciens ,biology.organism_classification ,01 natural sciences ,Saccharum ,03 medical and health sciences ,Transformation (genetics) ,chemistry.chemical_compound ,Horticulture ,030104 developmental biology ,chemistry ,Callus ,Botany ,Poaceae ,010606 plant biology & botany ,Transformation efficiency - Abstract
Sugarcane (Saccharum spp.) is a monocotyledonous semi-perennial C4 grass of the Poaceae family. Its capacity to accumulate high content of sucrose and biomass makes it one of the most important crops for sugar and biofuel production. Conventional methods of sugarcane breeding have shown several limitations due to its complex polyploid and aneuploid genome. However, improvement by biotechnological engineering is currently the most promising alternative to introduce economically important traits. In this work, we present an improved protocol for Agrobacterium tumefaciens-mediated transformation of commercial sugarcane hybrids using immature top stalk-derived embryogenic callus cultures. The callus cultures are transformed with preconditioned A. tumefaciens carrying a binary vector that encodes expression cassettes for a gene of interest and the bialaphos resistance gene (bar confers resistance to glufosinate-ammonium herbicide). This protocol has been used to successfully transform a commercial sugarcane cultivar, SP80-3280, highlighting: (i) reduced recalcitrance and oxidation; (ii) high yield of embryogenic callus; (iii) improved selection; and (iv) shoot regeneration and rooting of the transformed plants. Altogether, these improvements generated a transformation efficiency of 2.2%. This protocol provides a reliable tool for a routine procedure for sugarcane improvement by genetic engineering. © 2017 by John Wiley & Sons, Inc.
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- 2019
5. Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility
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Rowan A. C. Mitchell, Osvaldo Ferrarese-Filho, Robson Tramontina, Wagner Rodrigo de Souza, Till K. Pellny, Rogério Marchiosi, Danielly Caroline Inacio Martarello, Polyana Kelly Martins, Marco Aurélio Silva Tiné, Patrícia Abrão de Oliveira, Marília Gaspar, Thályta Fraga Pacheco, Bárbara Andrade Dias Brito da Cunha, Marcia R. Braga, Hugo Bruno Correa Molinari, Jackie Freeman, Felipe Vinecky, John Ralph, Danilo da Cruz Centeno, Fabio M. Squina, Adilson Kenji Kobayashi, Wanderley Dantas dos Santos, Bruno Leite Sampaio, Louise V. Michaelson, Raquel Bombarda Campanha, and Ana Paula Ribeiro
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0106 biological sciences ,0301 basic medicine ,Magnetic Resonance Spectroscopy ,Physiology ,Plant Science ,7. Clean energy ,01 natural sciences ,Lignin ,chemistry.chemical_compound ,Suppression, Genetic ,RNA interference ,Cell Wall ,Gene Expression Regulation, Plant ,Arabinoxylan ,Biomass ,Phylogeny ,2. Zero hunger ,Plant Stems ,Setaria viridis ,Hydrolysis ,food and beverages ,Organ Size ,Plants, Genetically Modified ,Seeds ,Carbohydrate Metabolism ,Brachypodium ,Xylans ,Brachypodium distachyon ,Setaria ,grass evolution ,Coumaric Acids ,Setaria Plant ,Biology ,Genes, Plant ,Cell wall ,03 medical and health sciences ,lignocellulosic feedstock ,Botany ,Gene Silencing ,hydroxycinnamates ,cell wall acylation ,biology.organism_classification ,030104 developmental biology ,chemistry ,Coenzyme A-Transferases ,Transcriptome ,Acids ,010606 plant biology & botany ,ferulic acid - Abstract
Feruloylation of arabinoxylan (AX) in grass cell walls is a key determinant of recalcitrance to enzyme attack, making it a target for improvement of grass crops, and of interest in grass evolution. Definitive evidence on the genes responsible is lacking so we studied a candidate gene that we identified within the BAHD acyl-CoA transferase family. We used RNA interference (RNAi) silencing of orthologs in the model grasses Setaria viridis (SvBAHD01) and Brachypodium distachyon (BdBAHD01) and determined effects on AX feruloylation. Silencing of SvBAHD01 in Setaria resulted in a c. 60% decrease in AX feruloylation in stems consistently across four generations. Silencing of BdBAHD01 in Brachypodium stems decreased feruloylation much less, possibly due to higher expression of functionally redundant genes. Setaria SvBAHD01 RNAi plants showed: no decrease in total lignin, approximately doubled arabinose acylated by p-coumarate, changes in two-dimensional NMR spectra of unfractionated cell walls consistent with biochemical estimates, no effect on total biomass production and an increase in biomass saccharification efficiency of 40-60%. We provide the first strong evidence for a key role of the BAHD01 gene in AX feruloylation and demonstrate that it is a promising target for improvement of grass crops for biofuel, biorefining and animal nutrition applications.
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- 2017
6. Overexpression of BdMATE Gene Improves Aluminum Tolerance in Setaria viridis
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Ana P. Ribeiro, Wagner R. de Souza, Polyana K. Martins, Felipe Vinecky, Karoline E. Duarte, Marcos F. Basso, Bárbara A. D. B. da Cunha, Raquel B. Campanha, Patrícia A. de Oliveira, Danilo C. Centeno, Geraldo M. A. Cançado, Jurandir V. de Magalhães, Carlos A. F. de Sousa, Alan C. Andrade, Adilson K. Kobayashi, and Hugo B. C. Molinari
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0106 biological sciences ,0301 basic medicine ,abiotic stress ,Transgene ,Plant Science ,Genetically modified crops ,lcsh:Plant culture ,01 natural sciences ,03 medical and health sciences ,Soil pH ,Botany ,lcsh:SB1-1110 ,Original Research ,Rhizosphere ,biology ,Setaria viridis ,Abiotic stress ,food and beverages ,hydroponic system ,biology.organism_classification ,Transformation (genetics) ,030104 developmental biology ,aluminum ,MATE ,Brachypodium distachyon ,010606 plant biology & botany - Abstract
Acidic soils are distributed worldwide, predominantly in tropical and subtropical areas, reaching around 50% of the arable soil. This type of soil strongly reduces crop production, mainly because of the presence of aluminum, which has its solubility increased at low pH levels. A well-known physiological mechanism used by plants to cope with Al stress involves activation of membrane transporters responsible for organic acid anions secretion from the root apex to the rhizosphere, which chelate Al, preventing its absorption by roots. In sorghum, a membrane transporter gene belonging to multidrug and toxic compound extrusion (MATE) family was identified and characterized as an aluminum-activated citrate transporter gene responsible for Al tolerance in this crop. Setaria viridis is an emerging model for C4 species and it is an important model to validate some genes for further C4 crops transformation, such as sugarcane, maize, and wheat. In the present work, Setaria viridis was used as a model plant to overexpress a newly identified MATE gene from Brachypodium distachyon (BdMATE), closely related to SbMATE, for aluminum tolerance assays. Transgenic S. viridis plants overexpressing a BdMATE presented an improved Al tolerance phenotype, characterized by sustained root growth and exclusion of aluminum from the root apex in transgenic plants, as confirmed by hematoxylin assay. In addition, transgenic plants showed higher root citrate exudation into the rhizosphere, suggesting that Al tolerance improvement in these plants could be related to the chelation of the metal by the organic acid anion. These results suggest that BdMATE gene can be used to transform C4 crops of economic importance with improved aluminum tolerance.
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- 2017
7. Different Molecular Mechanisms Account for Drought Tolerance in Coffea canephora var. Conilon
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Natalia Gomes Vieira, Alan Carvalho Andrade, Fernanda A Carneiro, Vânia Aparecida Silva, Felipe Vinecky, Sonia Elbelt, Jean Carlos Alekcevetch, Pierre Marraccini, Patricia Sanae Sujii, Maria Amélia Gava Ferrão, Fábio M. DaMatta, and Luciana Pereira Freire
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Résistance génétique ,Stomatal conductance ,Irrigation ,Tolérance à la sécheresse ,Photoinhibition ,Antioxidant ,F60 - Physiologie et biochimie végétale ,medicine.medical_treatment ,Drought tolerance ,Plant Science ,Coffea canephora ,Photosynthesis ,F30 - Génétique et amélioration des plantes ,Potentiel hydrique ,Botany ,Genetics ,medicine ,Expression des gènes ,clone ,Expérimentation ,biology ,fungi ,Mécanisme de défense cellulaire ,food and beverages ,biology.organism_classification ,PCR ,ABA ,Gène ,biology.protein ,H50 - Troubles divers des plantes ,U30 - Méthodes de recherche ,Peroxidase - Abstract
The effects of water deficit on photochemical parameters and expression of several candidate genes were investigated in drought-tolerant clone 73 of Coffea canephora submitted to slowly imposed water limitation. Under irriga- tion, this clone showed low values of stomatal conductance (gs) and of CO2 assimilation rates (A )s uggesting that it had a great efficiency in controlling stomatal closure and transpira- tion. After water withdrawal, this clone reached a −3.0 MPa after 15days without irrigation and showeda slow decrease in the pre-dawn leaf water potential. Under drought, the suppres- sion of Awas accompanied by maintenance of photochemical quenching (qP) and internal to ambient CO2 concentration (Ci/Ca) ratios as well as by a decrease of non-photochemical quenching (qN). This is confirmed by the transport rate/CO2 assimilation (ETR/A) rates that suggested the participation of an alternative electron sink protecting the photosynthetic apparatus against photoinhibition. At the transcriptomic level, high up-regulation of genes encoding for a dehydrin (CcDH3), an ascorbate peroxidase (CcAPX1), a prephenate-dehydrogenase like protein (CcPDH1) and a non-symbiotic haemoglobin (CcNSH1) was also observed upon drought suggesting a strong induction of antioxidant and osmoprotection systems in this clone. High expression levels of gene-encoding ABA receptors (CcPYL3 and CcPYL7) under water limitation were also ob- served suggesting the involvement of the ABA signaling path- way in response to drought. All these results where compared to those previously obtained for drought-tolerant clones 14 and 120. Our results demonstrated the existence of different mecha- nisms amongst the drought-tolerant coffee clones regarding water deficit.
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- 2013
8. Characterization of sugarcane (Saccharum spp.) leaf senescence: implications for biofuel production
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Felipe Vinecky, Adilson Kenji Kobayashi, Nelson Geraldo de Oliveira, Patrícia Abrão de Oliveira, Amanda P. De Souza, Bruna C Arenque-Musa, Marcos Silveira Buckeridge, Marcos Fernando Basso, Betania Ferraz Quirino, Hugo Bruno Correa Molinari, Polyana Kelly Martins, Maria Thereza Bazzo Martins, Bárbara Andrade Dias Brito da Cunha, and Wagner Rodrigo de Souza
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0106 biological sciences ,0301 basic medicine ,Renewable energy ,Management, Monitoring, Policy and Law ,Biology ,Photosynthesis ,01 natural sciences ,Applied Microbiology and Biotechnology ,Crop ,Saccharum ,03 medical and health sciences ,Nutrient ,Ethanol fuel ,Cultivar ,Renewable Energy, Sustainability and the Environment ,Research ,Cell wall ,fungi ,food and beverages ,Sugarcane ,Nutrient remobilization ,biology.organism_classification ,Natural leaf senescence ,030104 developmental biology ,General Energy ,Agronomy ,Biofuel ,Lignocellulosic ethanol ,BIOTECNOLOGIA DE PLANTAS ,Bagasse ,010606 plant biology & botany ,Biotechnology - Abstract
Background Second-generation ethanol (2G-bioethanol) uses lignocellulosic feedstocks for ethanol production. Sugarcane is one among the most suitable crops for biofuel production. Its juice is extracted for sugar production, while sugarcane bagasse, straw, and senescing leaves are considered industrial waste. Senescence is the age-dependent deterioration of plant cells, ultimately leading to cell death and completion of the plant life cycle. Because senescing leaves may also be used for biofuel production, understanding the process of natural senescence, including remobilization of nutrients and its effect on cell walls can provide useful information for 2G-bioethanol production from sugarcane leaves. Results The natural senescence process in leaves of the commercial sugarcane cultivar RB867515 was investigated. Senescence was characterized by strong reduction in photosynthetic pigments content, remobilization of the nutrients N, P, K, B, Cu, Fe, and Zn, and accumulation of Ca, S, Mg, B, Mn, and Al. No significant changes in the cell-wall composition occurred, and only small changes in the expression of cell wall-related genes were observed, suggesting that cell walls are preserved during senescence. Senescence-marker genes, such as SAG12-like and XET-like genes, were also identified in sugarcane and found to be highly expressed. Conclusions Our study on nutrient remobilization under senescence in a vigorous sugarcane cultivar can contribute to the understanding on how nutrient balance in a high-yielding crop is achieved. In general, neutral monosaccharide profile did not change significantly with leaf senescence, suggesting that senescing leaves of sugarcane can be as a feedstock for biofuel production using pretreatments established for non-senescing leaves without additional efforts. Based on our findings, the potential biotechnological applications for the improvement of sugarcane cultivars are discussed. Electronic supplementary material The online version of this article (doi:10.1186/s13068-016-0568-0) contains supplementary material, which is available to authorized users.
- Published
- 2016
9. Selection of reliable reference genes for RT-qPCR analysis during developmental stages and abiotic stress in Setaria viridis
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Adilson Kenji Kobayashi, Marcos Fernando Basso, Wagner Rodrigo de Souza, Hugo Bruno Correa Molinari, Polyana Kelly Martins, Ana Paula Ribeiro, Bárbara Andrade Dias Brito da Cunha, Valéria Mafra, and Felipe Vinecky
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0106 biological sciences ,0301 basic medicine ,Setaria ,Setaria Plant ,Genes, Plant ,Real-Time Polymerase Chain Reaction ,01 natural sciences ,Article ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Stress, Physiological ,Reference genes ,Gene expression ,Gene ,Plant Proteins ,Genetics ,Regulation of gene expression ,Multidisciplinary ,biology ,Setaria viridis ,Abiotic stress ,Gene Expression Profiling ,Gene Expression Regulation, Developmental ,biology.organism_classification ,Droughts ,Gene expression profiling ,030104 developmental biology ,Algorithms ,Aluminum ,010606 plant biology & botany - Abstract
Real-time PCR (RT-qPCR) expression analysis is a powerful analytical technique, but reliable results depend on the use of stable reference genes for proper normalization. This study proposed to test the expression stability of 13 candidate reference genes in Setaria viridis, a monocot species recently proposed as a new C4 model plant. Gene expression stability of these genes was assayed across different tissues and developmental stages of Setaria and under drought or aluminum stress. In general, our results showed Protein Kinase, RNA Binding Protein and SDH as the most stable genes. Moreover, pairwise analysis showed that two reference genes were sufficient to normalize the gene expression data under each condition. By contrast, GAPDH and ACT were the least stably expressed genes tested. Validation of suitable reference genes was carried out to profile the expression of P5CS and GolS during abiotic stress. In addition, normalization of gene expression of SuSy, involved in sugar metabolism, was assayed in the developmental dataset. This study provides a list of reliable reference genes for transcript normalization in S. viridis in different tissues and stages of development and under abiotic stresses, which will facilitate genetic studies in this monocot model plant.
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- 2016
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10. Differentially expressed genes and proteins upon drought acclimation in tolerant and sensitive genotypes of Coffea canephora
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Luiz Gonzaga Esteves Vieira, Natalia Gomes Vieira, Patricia Sanae Sujii, Thierry Leroy, Humberto J.O. Ramos, David Pot, Sonia Elbelt, Fábio M. DaMatta, Gabriel Sergio Costa Alves, Maria Amélia Gava Ferrão, Felipe Vinecky, Felipe Rodrigues da Silva, Alan Carvalho Andrade, Fernanda A Carneiro, Vânia Aparecida Silva, Jean Carlos Alekcevetch, and Pierre Marraccini
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Physiology ,Acclimatization ,ADN ,Coffea ,F62 - Physiologie végétale - Croissance et développement ,Plant Science ,F30 - Génétique et amélioration des plantes ,law.invention ,Gene Expression Regulation, Plant ,law ,Gene expression ,Expression des gènes ,proteomic ,Polymerase chain reaction ,Plant Proteins ,Expressed Sequence Tags ,Genetics ,Expressed sequence tag ,biology ,food and beverages ,Droughts ,Physiologie végétale ,Oxyde nitrique ,drought acclimation ,Research Paper ,Génétique moléculaire ,Genotype ,Canephora ,In silico ,Molecular Sequence Data ,Coffea canephora ,differential expression ,Sécheresse ,Complementary DNA ,Botany ,Adaptation ,Gene ,fungi ,candidate gene ,biology.organism_classification ,Résistance à la sécheresse ,Gène ,Électrophorèse ,H50 - Troubles divers des plantes ,real-time PCR - Abstract
The aim of this study was to investigate the molecular mechanisms underlying drought acclimation in coffee plants by the identification of candidate genes (CGs) using different approaches. The first approach used the data generated during the Brazilian Coffee expressed sequence tag (EST) project to select 13 CGs by an in silico analysis (electronic northern). The second approach was based on screening macroarrays spotted with plasmid DNA (coffee ESTs) with separate hybridizations using leaf cDNA probes from drought-tolerant and susceptible clones of Coffea canephora var. Conilon, grown under different water regimes. This allowed the isolation of seven additional CGs. The third approach used two-dimensional gel electrophoresis to identify proteins displaying differential accumulation in leaves of drought-tolerant and susceptible clones of C. canephora. Six of them were characterized by MALDI-TOF-MS/MS (matrix-assisted laser desorption-time of flight-tandem mass spectrometry) and the corresponding proteins were identified. Finally, additional CGs were selected from the literature, and quantitative real-time polymerase chain reaction (qPCR) was performed to analyse the expression of all identified CGs. Altogether, >40 genes presenting differential gene expression during drought acclimation were identified, some of them showing different expression profiles between drought-tolerant and susceptible clones. Based on the obtained results, it can be concluded that factors involved a complex network of responses probably involving the abscisic signalling pathway and nitric oxide are major molecular determinants that might explain the better efficiency in controlling stomata closure and transpiration displayed by drought-tolerant clones of C. canephora.
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- 2012
11. Post-secretory events alter the peptide content of the skin secretion of Hypsiboas raniceps
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Jacques Robert Nicoli, Alan Carvalho Andrade, Beatriz Simas Magalhães, Angela Mehta, Luciano P. Silva, José Roberto S. A. Leite, Felipe Vinecky, Maura V. Prates, Eder Alves Barbosa, Marcelo P. Bemquerer, Rodrigo M. Verly, J. A. T. Melo, and Carlos Bloch
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DNA, Complementary ,Subfamily ,Molecular Sequence Data ,Antimicrobial peptides ,Biophysics ,Peptide ,Biochemistry ,Complementary DNA ,Animals ,Secretion ,Phyllomedusinae ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Skin ,chemistry.chemical_classification ,Dermaseptin ,Bacteria ,Edman degradation ,biology ,Cell Biology ,biology.organism_classification ,chemistry ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Anura ,Antimicrobial Cationic Peptides - Abstract
A novel family of antimicrobial peptides, named raniseptins, has been characterized from the skin secretion of the anuran Hypsiboas raniceps. Nine cDNA molecules have been successfully cloned, sequenced, and their respective polypeptides were characterized by mass spectrometry and Edman degradation. The encoded precursors share structural similarities with the dermaseptin prepropeptides from the Phyllomedusinae subfamily and the mature 28-29 residue long peptides undergo further proteolytic cleavage in the crude secretion yielding consistent fragments of 14-15 residues. The biological assays performed demonstrated that the Rsp-1 peptide has antimicrobial activity against different bacterial strains without significant lytic effect against human erythrocytes, whereas the peptide fragments generated by endoproteolysis show limited antibiotic potency. MALDI imaging mass spectrometry in situ studies have demonstrated that the mature raniseptin peptides are in fact secreted as intact molecules within a defined glandular domain of the dorsal skin, challenging the physiological role of the observed raniseptin fragments, identified only as part of the crude secretion. In this sense, stored and secreted antimicrobial peptides may confer distinct protective roles to the frog.
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- 2008
12. Novel dermaseptins from Phyllomedusa hypochondrialis (Amphibia)
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Darlan A. Mesquita, Saulo Martins de Sá Mandel, Maura V. Prates, Luciano P. Silva, João Henrique Galasso, José Roberto S. A. Leite, Graciella R. Martins, Guilherme D. Brand, Alan Carvalho Andrade, Carlos Bloch, Selma A S Kuckelhaus, José R. Furtado, Eder Alves Barbosa, Felipe Vinecky, and Raimunda Nonata Ribeiro Sampaio
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Staphylococcus aureus ,Molecular Sequence Data ,Antimicrobial peptides ,Biophysics ,Peptide ,Biochemistry ,Amphibian Proteins ,Leukocytes ,Animals ,Humans ,Amino Acid Sequence ,Molecular Biology ,Leishmania ,Phyllomedusa ,chemistry.chemical_classification ,Dermaseptin ,Edman degradation ,biology ,Cell Biology ,Surface Plasmon Resonance ,biology.organism_classification ,Molecular biology ,Peptide Fragments ,Anti-Bacterial Agents ,Phyllomedusa hypochondrialis ,chemistry ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Pseudomonas aeruginosa ,Anura ,Sequence Alignment ,Frog Skin ,Phyllomedusa oreades ,Antimicrobial Cationic Peptides - Abstract
Six new antimicrobial peptides structurally related to the dermaseptin family have been isolated from the skin secretion of the amphibian Phyllomedusa hypochondrialis. The primary structures of these molecules named as DShypo 01, 02, 03, 04, 06, and 07 were determined by de novo MS/MS experiments, Edman degradation, and cDNA sequencing. The fifth peptide was found to be precisely the same DS 01 from Phyllomedusa oreades previously described by our group. The majority of the peptides purified from the crude skin secretion could be directly localized and mapped onto a freshly dissected dorsal skin fragment using mass spectrometry-imaging techniques. Comparisons between peptides and commercial drugs on their antibacterial and anti-Leishmania amazonensis efficiencies, associated with peptide lytic effects on mammalian blood cells and surface plasmon resonance interaction studies on immobilized DMPC vesicles, were also performed.
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- 2006
13. Lipid transfer proteins in coffee: isolation of Coffea orthologs, Coffea arabica homeologs, expression during coffee fruit development and promoter analysis in transgenic tobacco plants
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Eder Alves Barbosa, Juliana Dantas de Almeida, L. M. G. Barros, Pierre Marraccini, Michelle G. Cotta, Frédéric De Lamotte, Alan Carvalho Andrade, Gabriel Sergio Costa Alves, Felipe Vinecky, Natalia Gomes Vieira, Federal University of Lavras, Genetic Resources and Biotechnology, Parque Estação Biológica, Brazilian Agricultural Research Corporation (Embrapa), Amélioration génétique et adaptation des plantes méditerranéennes et tropicales (UMR AGAP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Campus Universitário Darcy Ribeiro, Universidade de Brasilia [Brasília] (UnB), Embrapa macroprogram project, CNPq, Brazilian Consortium of Coffee Research, CAPES [Sv738-12], and Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)
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0106 biological sciences ,Nicotiana tabacum ,[SDV]Life Sciences [q-bio] ,AMINO-ACID-SEQUENCE ,Coffea ,F62 - Physiologie végétale - Croissance et développement ,Plant Science ,Coffee ,01 natural sciences ,RICE GERMPLASM COLLECTION ,Endosperm ,F30 - Génétique et amélioration des plantes ,MULTIPLE SEQUENCE ALIGNMENT ,PHOSPHOLIPID-TRANSFER PROTEIN ,Expression des gènes ,Plant Proteins ,0303 health sciences ,biology ,Lipide ,food and beverages ,General Medicine ,Coffea arabica ,Protéine ,Plants, Genetically Modified ,Endosperme ,Biochemistry ,SINGLE NUCLEOTIDE POLYMORPHISMS ,Lipid transfer proteins ,Fève de café ,Développement biologique ,Canephora ,F60 - Physiologie et biochimie végétale ,Molecular Sequence Data ,Endosperm-specific promoter ,Real-Time Polymerase Chain Reaction ,Coffea canephora ,03 medical and health sciences ,PHYLOGENETIC TREES ,Bean development ,Sequence Homology, Nucleic Acid ,Complementary DNA ,WAXY GENE HAPLOTYPES ,Botany ,Genetics ,Amino Acid Sequence ,TIME RT-PCR ,Gene ,DNA Primers ,030304 developmental biology ,Génie génétique ,STORAGE PROTEIN ,MOLECULAR-CLONING ,Base Sequence ,Sequence Homology, Amino Acid ,Antigens, Plant ,Blotting, Northern ,biology.organism_classification ,Plante transgénique ,Gene expression ,Carrier Proteins ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
The aim of the present study was to perform a genomic analysis of non-specific lipid-transfer proteins (nsLTPs) in coffee. Several nsLTPs-encoding cDNA and gene sequences were cloned from Coffea arabica and Coffea canephora species. In this work, their analyses revealed that coffee nsLTPs belong to Type II LTP characterized under their mature forms by a molecular weight of around 7.3 kDa, a basic isoelectric points of 8.5 and the presence of typical CXC pattern, with X being an hydrophobic residue facing towards the hydrophobic cavity. Even if several single nucleotide polymorphisms were identified in these nsLTP-coding sequences, 3D predictions showed that they do not have a significant impact on protein functions. Northern blot and RT-qPCR experiments revealed specific expression of Type II nsLTPs-encoding genes in coffee fruits, mainly during the early development of endosperm of both C. arabica and C. canephora. As part of our search for tissue-specific promoters in coffee, an nsLTP promoter region of around 1.2 kb was isolated. It contained several DNA repeats including boxes identified as essential for grain specific expression in other plants. The whole fragment, and a series of 5' deletions, were fused to the reporter gene beta-glucuronidase (uidA) and analyzed in transgenic Nicotiana tabacum plants. Histochemical and fluorimetric GUS assays showed that the shorter (345 bp) and medium (827 bp) fragments of nsLTP promoter function as grain-specific promoters in transgenic tobacco plants.
- Published
- 2014
14. Spidroins from the Brazilian spider Nephilengys cruentata (Araneae: Nephilidae)
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F. R. da Silva, Pedro Ismael da Silva, Elíbio L. Rech, Randolph V. Lewis, Felipe Vinecky, Alan Carvalho Andrade, N.C. Verza, D. Bittencourt, Katharina Dittmar, and B.M. Souto
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Spider ,Base Sequence ,Physiology ,Spidroin ,Molecular Sequence Data ,Sequence Homology ,Nephilidae ,Spiders ,Biology ,biology.organism_classification ,Biochemistry ,Serine ,SILK ,Phylogenetics ,Evolutionary biology ,Nephilengys cruentata ,Botany ,Animals ,Amino Acid Sequence ,Cloning, Molecular ,Fibroins ,Molecular Biology ,Peptide sequence ,Phylogeny ,Gene Library - Abstract
Spiders produce up to six different kinds of silk, each one for a specific biological function. Spider silks are also known for their unique mechanical properties. The possibility of producing new materials with similar properties motivated research on these silk proteins (spidroins). Using expression sequence tags, we identified four spidroins produced by major ampullate, minor ampullate, flagelliform and tubuliform silk glands from the Brazilian spider Nephilengys cruentata (Araneae: Nephilidae). The new protein sequences showed substantial similarity to other spidroins previously described, with high content of alanine and glycine due to the presence of the highly repetitive motifs (polyAla, (GA)n, (GGX)n, (GPGGX)n). Similarities among sequences were also observed between the different spidroins with the exception of tubuliform spidroin, which presents a unique complex amino acid sequence with high amounts of serine and low amounts of glycine.
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- 2007
15. Projeto Genoma Brasileiro Café: recursos genômicos baseados em ESTs
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Alan Carvalho Andrade, Ricardo Harakava, Ângela Metha, Milton Massao Shimizu, Siu Mui Tsai, Gonçalo A.G. Pereira, João Batista Teixeira, Claudia Barros Monteiro-Vitorello, Suzana Neiva Santos, Angélica Carvalho de Oliveira, Pilar Drummond Sampaio Corrêa Mariani, Damares C. Monte, Eliana Gertrudes de Macedo Lemos, Mariana Cabral de Oliveira, Luis Eduardo Aranha de Camargo, Sônia Marli Zingaretti Di Mauro, Maria Fátima Grossi De Sá, Carlos Augusto Colombo, Oliveiro Guerreiro Filho, Marie-Anne Van Sluys, Marcos A. Machado, Walter José Siqueira, Helaine Carrer, Luiz Filipe Protasio Pereira, Regina Célia de Oliveira, Elionor Rita Pereira de Almeida, Eduardo Fernandes Formighieri, Gustavo G.L. Costa, Silvia Filippi Balbao, Carlos Alberto Labate, Eiko E. Kuramae, Ilka N. Abreu, Erika Cristina Jorge, João Batista, Eduardo Romano, Haiko Enok Sawazaki, Maria Inês Tiraboschi Ferro, Felipe Vinecky, Felipe Rodrigues da Silva, Edna Teruko Kimura, Erika V.S. Albuquerque, Ana Heloneida de Araújo Moraes, Mirian Perez Maluf, João Paulo Kitajima, Manoel Victor Franco Lemos, Hamza Fahmi Ali El Dorry, Luiz Lehmann Coutinho, Paulo Mazzafera, Maria Helena S. Goldman, Karem Guimarães Xavier, Maria Laine P. Tinoco, Marcelo Ribeiro Romano, Celso Luis Marino, Mirian T. S. Eira, Liziane Maria de Lima, Marcelo Falsarella Carazzolle, E. A. Giglioti, Luiz Gonzaga Esteves Vieira, Paulo Arruda, Marcos Mota do Carmo Costa, IAPAR Laboratório de Biotecnologia Vegetal, Instituto Agronômico (IAC), Universidade de São Paulo (USP), Universidade Estadual Paulista (Unesp), Universidade Federal de São Carlos (UFSCar), Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA), Universidade de Mogi das Cruzes, and Instituto Biológico de São Paulo
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Rubiaceae ,biology ,business.industry ,Coffea arabica ,Canephora ,Brasil ,Coffea ,Online database ,Projeto genoma ,Genomics ,Plant Science ,Genome project ,Coffea canephora ,biology.organism_classification ,Transcritoma ,Biotechnology ,EST ,Café ,business ,Transcriptome ,Agronomy and Crop Science ,cDNA - Abstract
Submitted by Guilherme Lemeszenski (guilherme@nead.unesp.br) on 2013-08-22T18:43:23Z No. of bitstreams: 1 S1677-04202006000100008.pdf: 927918 bytes, checksum: 9258fae108c1ae62bed73557138b4add (MD5) Made available in DSpace on 2013-08-22T18:43:24Z (GMT). No. of bitstreams: 1 S1677-04202006000100008.pdf: 927918 bytes, checksum: 9258fae108c1ae62bed73557138b4add (MD5) Previous issue date: 2006-03-01 Made available in DSpace on 2013-09-30T17:50:19Z (GMT). No. of bitstreams: 2 S1677-04202006000100008.pdf: 927918 bytes, checksum: 9258fae108c1ae62bed73557138b4add (MD5) S1677-04202006000100008.pdf.txt: 59764 bytes, checksum: 1ebac4580a41f44534b4dad6f32c761e (MD5) Previous issue date: 2006-03-01 Submitted by Vitor Silverio Rodrigues (vitorsrodrigues@reitoria.unesp.br) on 2014-05-20T13:13:27Z No. of bitstreams: 2 S1677-04202006000100008.pdf: 927918 bytes, checksum: 9258fae108c1ae62bed73557138b4add (MD5) S1677-04202006000100008.pdf.txt: 59764 bytes, checksum: 1ebac4580a41f44534b4dad6f32c761e (MD5) Made available in DSpace on 2014-05-20T13:13:27Z (GMT). No. of bitstreams: 2 S1677-04202006000100008.pdf: 927918 bytes, checksum: 9258fae108c1ae62bed73557138b4add (MD5) S1677-04202006000100008.pdf.txt: 59764 bytes, checksum: 1ebac4580a41f44534b4dad6f32c761e (MD5) Previous issue date: 2006-03-01 O café é um dos principais produtos agrícolas, sendo considerado o segundo item em importância do comércio internacional de commodities. O gênero Coffea pertence à família Rubiaceae que também inclui outras plantas importantes. Este gênero contém aproximadamente 100 espécies, mas a produção comercial é baseada somente em duas espécies, Coffea arabica e Coffea canephora, que representam aproximadamente 70 % e 30 % do mercado total de café, respectivamente. O Projeto Genoma Café Brasileiro foi desenvolvido com o objetivo de disponibilizar os modernos recursos da genômica à comunidade científica e aos diferentes segmentos da cadeia produtiva do café. Para isso, foram seqüenciados 214.964 clones escolhidos aleatoriamente de 37 bibliotecas de cDNA de C. arabica, C. canephora e C. racemosa representando estádios específicos do desenvolvimento de células e de tecidos do cafeeiro, resultando em 130.792, 12.381 e 10.566 seqüências de cada espécie, respectivamente, após processo de trimagem. Os ESTs foram agrupados em 17.982 contigs e em 32.155 singletons. A comparação destas seqüências pelo programa BLAST revelou que 22 % não tiveram nenhuma similaridade significativa às seqüências no banco de dados do National Center for Biotechnology Information (de função conhecida ou desconhecida). A base de dados de ESTs do cafeeiro resultou na identificação de cerca de 33.000 unigenes diferentes. Os resultados de anotação das seqüências foram armazenados em base de dados online em http://www.lge.ibi.unicamp.br/cafe. Os recursos desenvolvidos por este projeto disponibilizam ferramentas genéticas e genômicas que podem ser decisivas para a sustentabilidade, a competitividade e a futura viabilidade da agroindústria cafeeira nos mercados interno e externo. Coffee is one of the most valuable agricultural commodities and ranks second on international trade exchanges. The genus Coffea belongs to the Rubiaceae family which includes other important plants. The genus contains about 100 species but commercial production is based only on two species, Coffea arabica and Coffea canephora that represent about 70 % and 30 % of the total coffee market, respectively. The Brazilian Coffee Genome Project was designed with the objective of making modern genomics resources available to the coffee scientific community, working on different aspects of the coffee production chain. We have single-pass sequenced a total of 214,964 randomly picked clones from 37 cDNA libraries of C. arabica, C. canephora and C. racemosa, representing specific stages of cells and plant development that after trimming resulted in 130,792, 12,381 and 10,566 sequences for each species, respectively. The ESTs clustered into 17,982 clusters and 32,155 singletons. Blast analysis of these sequences revealed that 22 % had no significant matches to sequences in the National Center for Biotechnology Information database (of known or unknown function). The generated coffee EST database resulted in the identification of close to 33,000 different unigenes. Annotated sequencing results have been stored in an online database at http://www.lge.ibi.unicamp.br/cafe. Resources developed in this project provide genetic and genomic tools that may hold the key to the sustainability, competitiveness and future viability of the coffee industry in local and international markets. IAPAR Laboratório de Biotecnologia Vegetal Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Recursos Genéticos e Biotecnologia Núcleo de Biotecnologia-NTBio Instituto Agronômico de Campinas USP Escola Superior de Agricultura Luiz de Queiroz Departamento de Genética USP Superior de Agricultura Luiz de Queiroz Departamento de Zootecnia USP Escola Superior de Agricultura Luiz de Queiroz Departamento de Entomologia, Fitopatologia e Zoologia Agrícola USP Escola Superior de Agricultura Luiz de Queiroz Departamento de Ciências Biológicas UNESP Instituto de Biociências Departamento de Genética Universidade Federal de São Carlos (UFSCar) Centro de Ciências Agrárias USP Instituto de Ciências Biomédicas UNESP Faculdade de Ciências Agronômicas Departamento de Defesa Fitossanitária UNESP Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal Departamento de Tecnologia UNESP Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal Departamento de Biologia Aplicada à Agropecuária USP Instituto de Química Departamento de Bioquímica UNICAMP Instituto de Biologia Departamento de Fisiologia Vegetal UNICAMP Faculdade de Engenharia Química Instituto da Computação UNICAMP Instituto da Computação Laboratório de Bioinformática Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Café IAPAR IAC Centro APTA de Citros Sylvio Moreira USP Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto Departamento de Biologia USP Instituto de Biociências Departamento de Botânica USP Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Café Instituto Agronômico de Campinas Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Café Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Recursos Genéticos e Biotecnologia Núcleo de Biotecnologia-NTBio UNICAMP Centro de Biologia Molecular e Engenharia Genética Universidade de Mogi das Cruzes Núcleo Integrado de Biotecnologia Instituto Biológico de São Paulo Centro de Sanidade Vegetal USP Centro de Energia Nuclear na Agricultura UNICAMP Instituto de Biologia Laboratório de Genômica e Expressão UNESP Instituto de Biociências Departamento de Genética UNESP Faculdade de Ciências Agronômicas Departamento de Defesa Fitossanitária UNESP Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal Departamento de Tecnologia UNESP Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal Departamento de Biologia Aplicada à Agropecuária
- Published
- 2006
16. RBCS1 expression in coffee: Coffea orthologs, Coffea arabica homeologs, and expression variability between genotypes and under drought stress
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David Pot, Gabriel Sergio Costa Alves, Sonia Elbelt, Luiz Gonzaga Esteves Vieira, Natalia Gomes Vieira, Pierre Marraccini, Felipe Vinecky, Gustavo Costa Rodrigues, Humberto J.O. Ramos, Luciana Pereira Freire, Thierry Leroy, Alan Carvalho Andrade, Vânia Aparecida Silva, Christophe Montagnon, PIERRE MARRACCINI, CENARGEN, CIRAD, LUCIANA P. FREIRE, CENARGEN, GABRIEL S. C. ALVES, CENARGEN, NATALIA G. VIEIRA, CENARGEN, FELIPE VINECKY, CENARGEN, SONIA ELBELT, CENARGEN, HUMBERTO J. O. RAMOS, IAPAR, UFV, CHRISTOPHE MONTAGNON, CIRAD, LUIZ G. E. VIEIRA, IAPAR, THIERRY LEROY, CIRAD, DAVID POT, CIRAD, VÂNIA A. SILVA, EPAMIG, GUSTAVO COSTA RODRIGUES, CNPTIA, and ALAN CARVALHO ANDRADE, CENARGEN.
- Subjects
Rubisco activity ,Coffea ,F62 - Physiologie végétale - Croissance et développement ,Plant Science ,Expressão gênica ,Mass Spectrometry ,F30 - Génétique et amélioration des plantes ,Timor hybrid ,Gene Expression Regulation, Plant ,Sequence Analysis, Protein ,lcsh:Botany ,Protein Isoforms ,Cloning, Molecular ,Sequência genética ,biology ,food and beverages ,Coffea arabica ,Droughts ,lcsh:QK1-989 ,Photorespiration ,Café ,Research Article ,Drought stress ,Genotype ,Photoperiod ,Ribulose-Bisphosphate Carboxylase ,Canephora ,Molecular Sequence Data ,Genética Molecular ,Context (language use) ,Genes, Plant ,Coffea canephora ,Polymorphism, Single Nucleotide ,Stress, Physiological ,Botany ,Coffea Arábica ,Gene Library ,Molecular genetics ,Coffea Canephora ,Base Sequence ,Predawn leaf water potential ,Gene Expression Profiling ,Coffee plant ,RuBisCO ,Water ,biology.organism_classification ,Photosynthetic capacity ,Molecular Weight ,Plant Leaves ,biology.protein ,H50 - Troubles divers des plantes ,Gene expression ,Sequence Alignment - Abstract
Background In higher plants, the inhibition of photosynthetic capacity under drought is attributable to stomatal and non-stomatal (i.e., photochemical and biochemical) effects. In particular, a disruption of photosynthetic metabolism and Rubisco regulation can be observed. Several studies reported reduced expression of the RBCS genes, which encode the Rubisco small subunit, under water stress. Results Expression of the RBCS1 gene was analysed in the allopolyploid context of C. arabica, which originates from a natural cross between the C. canephora and C. eugenioides species. Our study revealed the existence of two homeologous RBCS1 genes in C. arabica: one carried by the C. canephora sub-genome (called CaCc) and the other carried by the C. eugenioides sub-genome (called CaCe). Using specific primer pairs for each homeolog, expression studies revealed that CaCe was expressed in C. eugenioides and C. arabica but was undetectable in C. canephora. On the other hand, CaCc was expressed in C. canephora but almost completely silenced in non-introgressed ("pure") genotypes of C. arabica. However, enhanced CaCc expression was observed in most C. arabica cultivars with introgressed C. canephora genome. In addition, total RBCS1 expression was higher for C. arabica cultivars that had recently introgressed C. canephora genome than for "pure" cultivars. For both species, water stress led to an important decrease in the abundance of RBCS1 transcripts. This was observed for plants grown in either greenhouse or field conditions under severe or moderate drought. However, this reduction of RBCS1 gene expression was not accompanied by a decrease in the corresponding protein in the leaves of C. canephora subjected to water withdrawal. In that case, the amount of RBCS1 was even higher under drought than under unstressed (irrigated) conditions, which suggests great stability of RBCS1 under adverse water conditions. On the other hand, for C. arabica, high nocturnal expression of RBCS1 could also explain the accumulation of the RBCS1 protein under water stress. Altogether, the results presented here suggest that the content of RBCS was not responsible for the loss of photosynthetic capacity that is commonly observed in water-stressed coffee plants. Conclusion We showed that the CaCe homeolog was expressed in C. eugenioides and non-introgressed ("pure") genotypes of C. arabica but that it was undetectable in C. canephora. On the other hand, the CaCc homeolog was expressed in C. canephora but highly repressed in C. arabica. Expression of the CaCc homeolog was enhanced in C. arabica cultivars that experienced recent introgression with C. canephora. For both C. canephora and C. arabica species, total RBCS1 gene expression was highly reduced with WS. Unexpectedly, the accumulation of RBCS1 protein was observed in the leaves of C. canephora under WS, possibly coming from nocturnal RBCS1 expression. These results suggest that the increase in the amount of RBCS1 protein could contribute to the antioxidative function of photorespiration in water-stressed coffee plants.
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