1. Development of SSR Markers Based on Transcriptome Sequences of the Wolf Spider Pardosa pseudoannulata (Araneae: Lycosidae)1
- Author
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Yu Peng, Chang-chun Li, Guo-yuan Li, and Yong Wang
- Subjects
0106 biological sciences ,Genetics ,Genetic diversity ,Spider ,Metal contamination ,biology ,Wolf spider ,010607 zoology ,food and beverages ,biology.organism_classification ,01 natural sciences ,Pardosa pseudoannulata ,Transcriptome ,010602 entomology ,Genetic marker ,Insect Science ,Primer (molecular biology) ,Ecology, Evolution, Behavior and Systematics - Abstract
Pardosa pseudoannulata (Boesenberg et Strand, l906) is one of the most common wandering spiders in agricultural fields, and a potential bioindicator for heavy metal contamination. In this study, a high-throughput method was used for discovering the simple sequence repeat (SSR) genetic markers from this spider. In total, 2805 sequences containing a total of 3450 SSRs were identified from the previously constructed transcriptome database, with 516 of the sequences containing more than one SSR. The most abundant SSRs in P. pseudoannulata are di-nucleotide (42.32%) SSRs, followed by mono-nucleotide (41.83%). A/T (41.36%) repeats were the most abundant, followed by AT/AT (28.32%). A total of 6561 pairs of SSR primers were designed using Primer 5.0 software, and a subset of 26 SSR primer pairs was randomly selected and validated by RT-PCR. The SSR markers identified here will be an important resource for measuring genetic diversity and biological monitoring research in P. pseudoannulata.
- Published
- 2020
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