12 results on '"Wataru Shinohara"'
Search Results
2. Crossability of a high-mountain dwarf variety of Lysimachia japonica (Primulaceae) endemic to Yakushima Island with its normal-sized lowland counterpart
- Author
-
Kiyokazu Agata, Akihiro Kakezawa, Wataru Shinohara, and Minoru N. Tamura
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,Ecotype ,fungi ,food and beverages ,Lysimachia japonica ,Plant Science ,biology.organism_classification ,01 natural sciences ,Genetic analysis ,Japonica ,Dwarfing ,Plant ecology ,03 medical and health sciences ,Primulaceae ,030104 developmental biology ,Botany ,Key (lock) ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
A high-mountain dwarf plant of Lysimachia japonica (Primulaceae) endemic to Yakushima is reported to be very unique in the dwarfing mechanism at cell level, and the plant is one of the candidates to be a key species to reveal the unsolved molecular mechanism of taxon-specific body size of plant. In the present study, we examined the crossability between the dwarf plant of L. japonica and its normal-sized lowland counterpart, and self- and cross-compatibilities within each linage. The results indicate that both dwarfed and normal-sized L. japonica are self- and cross-compatible within each ecotype and are bidirectionally cross-compatible with each other, suggesting that this plant possesses optimum life historical traits for further genetic analysis in order to clarify the mystery of molecular mechanism of taxon-specific body size.
- Published
- 2017
- Full Text
- View/download PDF
3. Historical biogeography of the fern genus Deparia (Athyriaceae) and its relation with polyploidy
- Author
-
Wataru Shinohara, Li-Yaung Kuo, Wen-Liang Chiou, Chun-Neng Wang, Germinal Rouhan, Atsushi Ebihara, and Kenneth R. Wood
- Subjects
0106 biological sciences ,0301 basic medicine ,Asia ,Range (biology) ,Biogeography ,Biology ,010603 evolutionary biology ,01 natural sciences ,Hawaii ,Polyploidy ,03 medical and health sciences ,Genetics ,Vicariance ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Phylogenetic tree ,Eupolypods II ,Ecology ,Deparia ,Australia ,DNA, Chloroplast ,Bayes Theorem ,Biodiversity ,Sequence Analysis, DNA ,biology.organism_classification ,Cryptochromes ,Phylogeography ,030104 developmental biology ,Africa ,North America ,Ferns ,Biological dispersal ,Fern - Abstract
The wide geographical distribution of many fern species is related to their high dispersal ability. However, very limited studies surveyed biological traits that could contribute to colonization success after dispersal. In this study, we applied phylogenetic approaches to infer historical biogeography of the fern genus Deparia (Athyriaceae, Eupolypods II). Because polyploids are suggested to have better colonization abilities and are abundant in Deparia, we also examined whether polyploidy could be correlated to long-distance dispersal events and whether polyploidy could play a role in these dispersals/establishment and range expansion. Maximum likelihood and Bayesian phylogenetic reconstructions were based on a four-region combined cpDNA dataset (rps16-matK IGS, trnL-L-F, matK and rbcL; a total of 4252 characters) generated from 50 ingroup (ca. 80% of the species diversity) and 13 outgroup taxa. Using the same sequence alignment and maximum likelihood trees, we carried out molecular dating analyses. The resulting chronogram was used to reconstruct ancestral distribution using the DEC model and ancestral ploidy level using ChromEvol. We found that Deparia originated around 27.7 Ma in continental Asia/East Asia. A vicariant speciation might account for the disjunctive distribution of East Asia–northeast North America. There were multiple independent long-distance dispersals to Africa/Madagascar (at least once), Southeast Asia (at least once), south Pacific islands (at least twice), Australia/New Guinea/New Zealand (at least once), and the Hawaiian Islands (at least once). In particular, the long-distance dispersal to the Hawaiian Islands was associated with polyploidization, and the dispersal rate was slightly higher in the polyploids than in diploids. Moreover, we found five species showing recent infraspecific range expansions, all of which took place concurrently with polyploidization. In conclusion, our study provides the first investigation using phylogenetic and biogeographic analyses trying to explore the link between historical biogeography and ploidy evolution in a fern genus and our results imply that polyploids might be better colonizers than diploids.
- Published
- 2016
- Full Text
- View/download PDF
4. Genetic differentiation in cauline-leaf-specific wettability of a rosette-forming perennial Arabidopsis from two contrasting montane habitats
- Author
-
Mie N. Honjo, Biva Aryal, Wataru Shinohara, and Hiroshi Kudoh
- Subjects
0106 biological sciences ,Perennial plant ,Arabidopsis ,Plant Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,Rosette (botany) ,Botany ,Ecosystem ,Altitude ,Water ,Understory ,Trichomes ,Original Articles ,biology.organism_classification ,Adaptation, Physiological ,Genetic differentiation ,Plant Leaves ,Habitat ,Frost ,Plant Stomata ,Montane ecology ,Transcriptome ,010606 plant biology & botany - Abstract
BACKGROUND AND AIMS: An altitudinal gradient of leaf wettability is often observed between and within species. To understand its functional significance, positional variation of leaf surfaces within plants should be taken into account. In rosette-forming plants, rosette leaves are near the ground and their adaxial surfaces are exposed, whereas cauline leaves are lifted from the ground throughout the reproductive season, and their abaxial surfaces are more exposed. Here, we investigated leaf wettability of cauline and rosette leaves of Arabidopsis halleri subsp. gemmifera growing in contrasting montane habitats along an altitudinal gradient at Mt Ibuki, Japan. METHODS: We conducted field investigations and a growth chamber experiment to determine whether field-observed variation in leaf wettability was caused by genetic differentiation. We further performed gene expression analysis of a wax-related gene, i.e. AhgCER1, a homologue of A. thaliana ECERIFERUM1 (CER1) that may be involved in differentiation of leaf wettability. KEY RESULTS: We found cauline-leaf specific genetic differentiation in leaf wettability between contrasting montane habitats. Cauline leaves of semi-alpine plants, especially on abaxial surfaces, were non-wettable. Cauline leaves of low-altitudinal understorey plants were wettable, and rosette leaves were also wettable in both habitats. AhgCER1 expression corresponded to observed leaf wettability patterns. CONCLUSIONS: Low wettability of cauline leaves is hypothesized to keep exposed surfaces dry when they are wrapping flowering buds in early spring, and presumably protects flowering buds from frost damage. The genetic system that controls wax content, specifically for cauline leaves, should be involved in the observed genetic differentiation, and AhgCER1 control is a strong candidate for the underlying genetic mechanism.
- Published
- 2017
5. The Use of matK in Ophioglossaceae Phylogeny and the Determination of Mankyua Chromosome Number Shed Light on Chromosome Number Evolution in Ophioglossaceae
- Author
-
Jong Kun Kim, Hiroshi Noda, Norio Sahashi, Narumi Nakato, Wataru Shinohara, Yoko Yatabe-Kakugawa, Noriaki Murakami, and Taketoshi Oka
- Subjects
Genetics ,biology ,Phylogenetic tree ,Ophioglossaceae ,Lineage (evolution) ,Ophioglossum ,Plant Science ,biology.organism_classification ,Helminthostachys ,Genus ,Phylogenetics ,Botrychium ,Ecology, Evolution, Behavior and Systematics - Abstract
The chromosome number and phylogenetic position of the monotypic eusporangiate genus Mankyua (Ophioglossaceae), which shares peculiar morphological characteristics with Ophioglossum s.l. and Helminthostachys, were determined. Meiotic and mitotic chromosome observations of Mankyua show n = 130 and 2n = ca. 260, suggesting that the base number of this genus is x = 130, which is a new finding and the highest base number reported so far for Ophioglossaceae. The molecular phylogenetic trees derived from nucleotide sequence variation of rbcL and matK genes differ in terms of the phylogenetic position of Mankyua. The molecular phylogenetic trees based on combined data sets of rbcL and matK suggest that Mankyua might be the earliest-diverging lineage of Ophioglossaceae.
- Published
- 2013
- Full Text
- View/download PDF
6. Not only in the temperate zone: independent gametophytes of two vittarioid ferns (Pteridaceae, Polypodiales) in East Asian subtropics
- Author
-
Wen-Liang Chiou, Cheng-Wei Chen, Atsushi Ebihara, Hirotoshi Sato, Yao-Moan Huang, Wataru Shinohara, Li-Yaung Kuo, and Hiroshi Kudoh
- Subjects
0106 biological sciences ,0301 basic medicine ,Pteridaceae ,food.ingredient ,DNA, Plant ,Taiwan ,Plant Science ,Subtropics ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,food ,Japan ,Botany ,Plastids ,Haplopteris ,Gametophyte ,biology ,Ecology ,Polypodiales ,Sporophyte ,Sequence Analysis, DNA ,biology.organism_classification ,030104 developmental biology ,Biological dispersal ,Fern ,Germ Cells, Plant - Abstract
Independent gametophyte ferns are unique among vascular plants because they are sporophyteless and reproduce asexually to maintain their populations in the gametophyte generation. Such ferns had been primarily discovered in temperate zone, and usually hypothesized with (sub)tropical origins and subsequent extinction of sporophyte due to climate change during glaciations. Presumably, independent fern gametophytes are unlikely to be distributed in tropics and subtropics because of relatively stable climates which are less affected by glaciations. Nonetheless, the current study presents cases of two independent gametophyte fern species in subtropic East Asia. In this study, we applied plastid DNA sequences (trnL-L-F and matK + ndhF + chlL datasets) and comprehensive sampling (~80%) of congeneric species for molecular identification and divergence time estimation of these independent fern gametophytes. The two independent gametophyte ferns were found belonging to genus Haplopteris (vittarioids, Pteridaceae) and no genetic identical sporophyte species in East Asia. For one species, divergence times between its populations imply recent oversea dispersal(s) by spores occurred during Pleistocene. By examining their ex situ and in situ fertility, prezygotic sterility was found in these two Haplopteris, in which gametangia were not or very seldom observed, and this prezygotic sterility might attribute to their lacks of functional sporophytes. Our field observation and survey on their habitats suggest microhabitat conditions might attribute to this prezygotic sterility. These findings point to consideration of whether recent climate change during the Pleistocene glaciation resulted in ecophysiological maladaptation of non-temperate independent gametophyte ferns. In addition, we provided a new definition to classify fern gametophyte independences at the population level. We expect that continued investigations into tropical and subtropical fern gametophyte floras will further illustrate the biogeographic significance of non-temperate fern gametophyte independence.
- Published
- 2016
7. Evidence for Hybrid Origin and Segmental Allopolyploidy in Eutetraploid and Aneutetraploid Lepisorus thunbergianus (Polypodiaceae)
- Author
-
Hiroshi Kudoh, Yutaka Ushio, Wataru Shinohara, Akihiro Seo, Noriaki Murakami, Masumi Kono, Narumi Nakato, and Hiroshi Tobe
- Subjects
Genetics ,fungi ,food and beverages ,Chromosome ,Plant Science ,Biology ,biology.organism_classification ,Loss of heterozygosity ,Polypodiaceae ,Ploidy ,Allele ,Lepisorus thunbergianus ,Ecology, Evolution, Behavior and Systematics - Abstract
Several cytotypes (polyploids and aneuploids) have been reported in Lepisorus thunbergianus. The relationships between these cytotypes within the species remain poorly understood. We studied populations in an area where various cytotypes of L. thunbergianus as well as two diploid species, L. angustus and L. onoei, candidate parental species that may be involved in allopolyploid origins of L. thunbergianus polyploids, occur. We determined the ploidy levels of sampled materials by direct chromosome counting and flow cytometry. We elucidated the origins of L. thunbergianus polyploids by analyzing allozyme polymorphisms, and in addition, we examined the occurrence of segmental allopolyploidy by comparing allelic variation between polyploids and their parental diploids. Six cytotypes, i.e. one diploid (2n = 50), two triploid (2n = 75 and 76) and three tetraploid (2n = 100, 101, and 102) cytotypes, were observed in L. thunbergianus, and the two diploid species, L. angustus (2n =52) and L. onoei (2n =50) were confirmed to include a single cytotype each. Allozyme analyses indicated that the tetraploid (2n =100) and hypertetraploid (2n = 102) of L. thunbergianus originated by allopolyploidy between diploid L. thunbergianus (2n = 50) and diploid L. angustus (2n = 52), since the polyploids shared alleles with these two diploids that were unique to each diploid. The allozyme patterns excluded the possibility that L. thunbergianus polyploids originated from L. onoei. The unbalanced heterozygosity and homozygosity found in the tetraploid and the hypertetraploid of L. thunbergianus indicated their segmental allopolyploidy.
- Published
- 2010
- Full Text
- View/download PDF
8. Patterns of hybrid formation among cryptic species of bird-nest fern,Asplenium niduscomplex (Aspleniaceae), in West Malesia
- Author
-
Sadamu Matsumoto, Wataru Shinohara, Noriaki Murakami, and Yoko Yatabe
- Subjects
Species complex ,biology ,Asplenium nidus ,Plant Science ,Reproductive isolation ,biology.organism_classification ,Genetic distance ,Evolutionary biology ,Botany ,Fern ,Mating ,Aspleniaceae ,Ecology, Evolution, Behavior and Systematics ,Hybrid - Abstract
In order to clarify patterns of hybrid formation in the Asplenium nidus complex, artificial crossing experiments were performed between individuals of genetically differentiated groups based on the sequence of the rbcL gene, including A. australasicum from New Caledonia, A. setoi from Japan and several cryptic species in the A. nidus complex. No hybrid plants were obtained in crosses between nine of the 16 pairs. Even for pairs that generated hybrids, the frequency of hybrid formation was lower than expected given random mating, or only one group was able to act as the maternal parent, when the genetic distance (Kimura's two parameter) between parental individuals was at least 0.006. Sterile hybrids were produced by three pairs that were distantly related but capable of forming hybrids. Considering the results of the crosses together with the genetic distance between the parental individuals, it seems that the frequency of hybrid formation decreases rapidly with increasing divergence. The frequency of hybrid formation has not been previously examined in homosporous ferns, but it seems that a low frequency of hybrid formation can function as an important mechanism of reproductive isolation between closely related pairs of species in the A. nidus complex in addition to hybrid sterility. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 160, 42–63.
- Published
- 2009
- Full Text
- View/download PDF
9. Deparia Longipes (Woodsiaceae) Native to Taiwan
- Author
-
Tsai-Wen Hsu, Wataru Shinohara, Noriaki Murakami, Ho-Ming Chang, and Shann-Jye Moore
- Subjects
Woodsiaceae ,biology ,Deparia ,Botany ,Plant Science ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2006
- Full Text
- View/download PDF
10. Genetic Analysis of the Newly Found Diploid Cytotype of Deparia petersenii (Woodsiaceae: Pteridophyta): Evidence for Multiple Origins of the Tetraploid
- Author
-
Shann-Jye Moore, Noriaki Murakami, Tsai-Wen Hsu, and Wataru Shinohara
- Subjects
Woodsiaceae ,fungi ,Deparia ,food and beverages ,Genetic relationship ,Plant Science ,Biology ,biology.organism_classification ,Genetic analysis ,Polyploid ,Genetic structure ,Botany ,Ploidy ,Ecology, Evolution, Behavior and Systematics ,NdhF - Abstract
According to the most recent monograph of the genus Deparia, Deparia petersenii is a species in the section Athyriopsis, which is one of the four sections of the genus Deparia. Because few diploids have been reported in the section Athyriopsis, no studies attempting to deduce how polyploid Athyriopsis species have originated have been conducted. We report here on the genetic structure and relationships of diploid D. petersenii, which is a new cytotype we discovered in Taiwan. Although the diploid populations have extensive morphological variation, the results of isozyme analysis indicate that the diploid plants belong to a single biological species. We examined the genetic relationship between the diploids and the other cytotypes (tetraploid and hexaploid) by sequencing variable chloroplast DNA regions (rbcL and ndhF). Two major haplotypes found in the diploids were shared with some of the tetraploids. Therefore, we concluded that the tetraploid D. petersenii has evolved from the diploid at least twice. T...
- Published
- 2006
- Full Text
- View/download PDF
11. Fertility and precocity of Osmunda x intermedia offspring in culture
- Author
-
Wataru Shinohara, Noriaki Murakami, Kaoru Yamamoto, Chie Tsutsumi, Yoko Yatabe, and Masahiro Kato
- Subjects
Frond ,Ploidies ,biology ,Offspring ,Chimera ,media_common.quotation_subject ,Reproduction ,Osmunda ,Introgression ,Fertility ,Plant Science ,Reproductive isolation ,biology.organism_classification ,Biological Evolution ,Botany ,Spore germination ,Ferns ,Hybridization, Genetic ,Inbreeding ,media_common - Abstract
The feasibility of later-generation hybrid production in ferns has not been previously studied, although it is a significant factor in relation to reproductive isolation. Osmunda × intermedia, a hybrid between O. japonica and O. lancea, is semifertile and has moderate spore germination rates. Under the artificial conditions of this study, F2 and F3 offspring were formed. Some of the F2 offspring showed precocity, and some of the F3 offspring also showed precocity. This fertility suggests that introgressive hybridization might be ongoing in nature. This also indicates a currently unknown genetic control over the timing of fertile frond production in Osmunda.
- Published
- 2010
12. How have the alpine dwarf plants in Yakushima been miniaturized? A comparative study of two alpine dwarf species in Yakushima, Blechnum niponicum (Blechnaceae) and Lysimachia japonica (Primulaceae)
- Author
-
Wataru Shinohara and Noriaki Murakami
- Subjects
Blechnaceae ,biology ,fungi ,food and beverages ,Lysimachia japonica ,Dwarfism ,Plant Science ,biology.organism_classification ,medicine.disease ,Blechnum niponicum ,Japonica ,Isoenzymes ,Plant Leaves ,Primulaceae ,Japan ,parasitic diseases ,Botany ,medicine ,Ferns ,Leaf size ,Fern ,Plant Physiological Phenomena - Abstract
Many plant species are miniaturized in the alpine region in Yakushima, Japan. To examine how these alpine dwarf plants are different from their related lowland ones of the same species, we analyzed two phylogenetically distinct species cytologically, genetically and morphologically: one is a fern species, Blechnum niponicum, and the other is an angiosperm species, Lysimachia japonica. The analysis shows that the alpine dwarf and the lowland plants in each of these species do not differ in chromosome number or genetic constitution. The organ-level comparison between the alpine dwarf and lowland plants of B. niponicum shows that the fertile leaf size correlates closely with the sterile one. By contrast, the flower size does not correlate with the leaf size in L. japonica. At the cell level, the leaf size of the alpine dwarf plants of B. niponicum consists of a smaller number of epidermal cells than that of the lowland plants of this species. On the other hand, the smaller leaf size of the alpine dwarf plants of L. japonica depends on both the smaller number and the smaller size of the epidermal cells. We conclude that plant dwarfism in Yakushima shows variation at both the organ and cell levels.
- Published
- 2006
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.