1. Transcriptionally Repressive Chromatin Remodelling and CpG Methylation in the Presence of Expanded CTG-Repeats at the DM1 Locus
- Author
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Arnold Munnich, Annie Nicole, Geneviève Gourdon, Judith Rixt Brouwer, and Aline Huguet
- Subjects
musculoskeletal diseases ,congenital, hereditary, and neonatal diseases and abnormalities ,Article Subject ,lcsh:QH426-470 ,Bisulfite sequencing ,Biochemistry ,lcsh:Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,lcsh:QD415-436 ,Molecular Biology ,Gene ,ChIA-PET ,030304 developmental biology ,0303 health sciences ,biology ,Molecular biology ,Chromatin ,lcsh:Genetics ,Histone ,DNA methylation ,biology.protein ,Trinucleotide repeat expansion ,030217 neurology & neurosurgery ,Research Article - Abstract
An expanded CTG-repeat in the 3′ UTR of theDMPKgene is responsible for myotonic dystrophy type I (DM1). Somatic and intergenerational instability cause the disease to become more severe during life and in subsequent generations. Evidence is accumulating that trinucleotide repeat instability and disease progression involve aberrant chromatin dynamics. We explored the chromatin environment in relation to expanded CTG-repeat tracts in hearts from transgenic mice carrying the DM1 locus with different repeat lengths. Using bisulfite sequencing we detected abundant CpG methylation in the regions flanking the expanded CTG-repeat. CpG methylation was postulated to affect CTCF binding but we found that CTCF binding is not affected by CTG-repeat length in our transgenic mice. We detected significantly decreasedDMPKsense andSIX5transcript expression levels in mice with expanded CTG-repeats. Expression of the DM1 antisense transcript was barely affected by CTG-repeat expansion. In line with altered gene expression, ChIP studies revealed a locally less active chromatin conformation around the expanded CTG-repeat, namely, decreased enrichment of active histone mark H3K9/14Ac and increased H3K9Me3 enrichment (repressive chromatin mark). We also observed binding of PCNA around the repeats, a candidate that could launch chromatin remodelling cascades at expanded repeats, ultimately affecting gene transcription and repeat instability.
- Published
- 2013
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