1. Clonality assessment and detection of clonal diversity in classic Hodgkin lymphoma by next-generation sequencing of immunoglobulin gene rearrangements
- Author
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Blanca Scheijen, Konnie M. Hebeda, Diede A G van Bladel, Demi L C M Haacke, Samhita Pamidimarri Naga, J. Han van Krieken, Patricia J. T. A. Groenen, Jeroen A.C.W. Luijks, Michiel van den Brand, and Jos Rijntjes
- Subjects
Pathology ,medicine.medical_specialty ,DNA Copy Number Variations ,Cancer development and immune defence Radboud Institute for Molecular Life Sciences [Radboudumc 2] ,Biology ,Rare cancers Radboud Institute for Molecular Life Sciences [Radboudumc 9] ,Immunoglobulin light chain ,DNA sequencing ,Pathology and Forensic Medicine ,Immunoglobulin kappa-Chains ,medicine ,T-cell lymphoma ,Humans ,Copy-number variation ,Gene ,Gene Rearrangement ,Genes, Immunoglobulin ,High-Throughput Nucleotide Sequencing ,Histology ,medicine.disease ,Molecular biology ,Hodgkin Disease ,biology.protein ,Antibody ,Immunoglobulin Gene Rearrangement ,Immunoglobulin Heavy Chains - Abstract
Contains fulltext : 252063.pdf (Publisher’s version ) (Open Access) Clonality analysis in classic Hodgkin lymphoma (cHL) is of added value for correctly diagnosing patients with atypical presentation or histology reminiscent of T cell lymphoma, and for establishing the clonal relationship in patients with recurrent disease. However, such analysis has been hampered by the sparsity of malignant Hodgkin and Reed-Sternberg (HRS) cells in a background of reactive immune cells. Recently, the EuroClonality-NGS Working Group developed a novel next-generation sequencing (NGS)-based assay and bioinformatics platform (ARResT/Interrogate) to detect immunoglobulin (IG) gene rearrangements for clonality testing in B-cell lymphoproliferations. Here, we demonstrate the improved performance of IG-NGS compared to conventional BIOMED-2/EuroClonality analysis to detect clonal gene rearrangements in 16 well-characterized primary cHL cases within the IG heavy chain (IGH) and kappa light chain (IGK) loci. This was most obvious in formalin-fixed paraffin-embedded (FFPE) tissue specimens, where three times more clonal cases were detected with IG-NGS (9 cases) compared to BIOMED-2 (3 cases). In total, almost four times more clonal rearrangements were detected in FFPE with IG-NGS (N = 23) as compared to BIOMED-2/EuroClonality (N = 6) as judged on identical IGH and IGK targets. The same clonal rearrangements were also identified in paired fresh frozen cHL samples. To validate the neoplastic origin of the detected clonotypes, IG-NGS clonality analysis was performed on isolated HRS cells, demonstrating identical clonotypes as detected in cHL whole-tissue specimens. Interestingly, IG-NGS and HRS single-cell analysis after DEPArray™ digital sorting revealed rearrangement patterns and copy number variation profiles indicating clonal diversity and intratumoral heterogeneity in cHL. Our data demonstrate improved performance of NGS-based detection of IG gene rearrangements in cHL whole-tissue specimens, providing a sensitive molecular diagnostic assay for clonality assessment in Hodgkin lymphoma.
- Published
- 2022