13 results on '"David C. Thorn"'
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2. Amyloid fibril formation by αS1- and β-casein implies that fibril formation is a general property of casein proteins
- Author
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Elmira Bahraminejad, Devashi Paliwal, Margaret Sunde, Carl Holt, John A. Carver, and David C. Thorn
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Biophysics ,Molecular Biology ,Biochemistry ,Analytical Chemistry - Published
- 2022
- Full Text
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3. Redox chemistry of lens crystallins: A system of cysteines
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David C. Thorn, Liliana Quintanar, and Eugene Serebryany
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Aging ,Protein aggregation ,Redox ,Article ,Cellular and Molecular Neuroscience ,Crystallin ,Lens, Crystalline ,Metabolome ,medicine ,Humans ,Cysteine ,Disulfides ,Sulfhydryl Compounds ,gamma-Crystallins ,Therapeutic strategy ,Glutathione Disulfide ,Chemistry ,Lipidome ,Glutathione ,Sensory Systems ,Ophthalmology ,medicine.anatomical_structure ,Lens (anatomy) ,Proteome ,Biophysics ,Oxidation-Reduction - Abstract
The nuclear region of the lens is metabolically quiescent, but it is far from inert chemically. Without cellular renewal and with decades of environmental exposures, the lens proteome, lipidome, and metabolome change. The lens crystallins have evolved exquisite mechanisms for resisting, slowing, adapting to, and perhaps even harnessing the effects of these cumulative chemical modifications to minimize the amount of light-scattering aggregation in the lens over a lifetime. Redox chemistry is a major factor in these damages and mitigating adaptations, and as such, it is likely to be a key component of any successful therapeutic strategy for preserving or rescuing lens transparency, and perhaps flexibility, during aging. Protein redox chemistry is typically mediated by Cys residues. This review will therefore focus primarily on the Cys-rich γ-crystallins of the human lens, taking care to extend these findings to the β- and α-crystallins where pertinent.
- Published
- 2021
4. The amyloid fibril-forming β-sheet regions of amyloid β and α-synuclein preferentially interact with the molecular chaperone 14-3-3ζ
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Christopher M. Dobson, David C. Thorn, Danielle M. Williams, Sarah Meehan, John A. Carver, Joanna M. Woodcock, Sophie E. Jackson, Williams, Danielle M, Thorn, David C, Dobson, Christopher M, Meehan, Sarah, Jackson, Sophie E, Woodcock, Joanna M, Carver, John A, Thorn, David C. [0000-0002-7332-2292], Meehan, Sarah [0000-0002-2778-4373], Woodcock, Joanna M. [0000-0001-5127-9687], Carver, John A. [0000-0002-2441-8108], Apollo - University of Cambridge Repository, Thorn, David C [0000-0002-7332-2292], Woodcock, Joanna M [0000-0001-5127-9687], Carver, John A [0000-0002-2441-8108], and Jackson, Sophie [0000-0002-7470-9800]
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Gene isoform ,Amyloid ,Protein Conformation ,Beta sheet ,Pharmaceutical Science ,Organic chemistry ,Article ,Analytical Chemistry ,chemistry.chemical_compound ,Protein Aggregates ,QD241-441 ,α-synuclein ,NMR spectroscopy ,In vivo ,Drug Discovery ,amyloid fibril ,Humans ,Protein Interaction Domains and Motifs ,Physical and Theoretical Chemistry ,Protein Unfolding ,Amyloid beta-Peptides ,Chemistry ,14-3-3 proteins ,Nuclear magnetic resonance spectroscopy ,molecular chaperone ,In vitro ,Monomer ,Chemistry (miscellaneous) ,Biophysics ,Unfolded protein response ,alpha-Synuclein ,Molecular Medicine ,Phosphorylation ,amyloid β ,Protein Conformation, beta-Strand ,Molecular Chaperones ,Protein Binding - Abstract
14-3-3 proteins are abundant, intramolecular proteins that play a pivotal role in cellular signal transduction by interacting with phosphorylated ligands. In addition, they are molecular chaperones that prevent protein unfolding and aggregation under cellular stress conditions in a similar manner to the unrelated small heat-shock proteins. In vivo, amyloid β (Aβ) and α-synuclein (α-syn) form amyloid fibrils in Alzheimer’s and Parkinson’s diseases, respectively, a process that is intimately linked to the diseases’ progression. The 14-3-3ζ isoform potently inhibited in vitro fibril formation of the 40-amino acid form of Aβ (Aβ40) but had little effect on α-syn aggregation. Solution-phase NMR spectroscopy of 15N-labeled Aβ40 and A53T α-syn determined that unlabeled 14-3-3ζ interacted preferentially with hydrophobic regions of Aβ40 (L11-H21 and G29-V40) and α-syn (V3-K10 and V40-K60). In both proteins, these regions adopt β-strands within the core of the amyloid fibrils prepared in vitro as well as those isolated from the inclusions of diseased individuals. The interaction with 14-3-3ζ is transient and occurs at the early stages of the fibrillar aggregation pathway to maintain the native, monomeric, and unfolded structure of Aβ40 and α-syn. The N-terminal regions of α-syn interacting with 14-3-3ζ correspond with those that interact with other molecular chaperones as monitored by in-cell NMR spectroscopy.
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- 2021
5. Native disulphide-linked dimers facilitate amyloid fibril formation by bovine milk alpha(S2)-casein
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Glyn L. Devlin, Jitendra P. Mata, Aidan B. Grosas, Elmira Bahraminejad, Heath Ecroyd, John A. Carver, Carl Holt, Margaret Sunde, David C. Thorn, Peter Hoffmann, Tomas Koudelka, Thorn, David C, Bahraminejad, Elmira, Grosas, Aidan B, Koudelka, Tomas, Hoffmann, Peter, Mata, Jitendra P, Devlin, Glyn L, Sunde, Margaret, Ecroyd, Heath, Holt, Carl, and Carver, John A
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Circular dichroism ,Dimer ,030303 biophysics ,Biophysics ,macromolecular substances ,Fibril ,Antiparallel (biochemistry) ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,medicine ,Intramolecular disulphide ,030304 developmental biology ,0303 health sciences ,Milk casein protein ,Amyloidosis ,Organic Chemistry ,medicine.disease ,Monomer ,chemistry ,Intermolecular disulphide ,Thioflavin ,Amyloid fibril ,Cysteine - Abstract
Bovine milk alpha(S2)-casein, an intrinsically disordered protein, readily forms amyloid fibrils in vitro and is implicated in the formation of amyloid fibril deposits in mammary tissue. Its two cysteine residues participate in the formation of either intra- or intermolecular disulphide bonds, generating monomer and dimer species. X-ray solution scattering measurements indicated that both forms of the protein adopt large, spherical oligomers at 20 degrees C. Upon incubation at 37 degrees C, the disulphide-linked dimer showed a significantly greater propensity to form amyloid fibrils than its monomeric counterpart. Thioflavin T fluorescence, circular dichroism and infrared spectra were consistent with one or both of the dimer isomers (in a parallel or antiparallel arrangement) being predisposed toward an ordered, amyloid-like structure. Limited proteolysis experiments indicated that the region from Ala(81) to Lys(113) is incorporated into the fibril core, implying that this region, which is predicted by several algorithms to be amyloidogenic, initiates fibril formation of alpha(S2)-casein. The partial conservation of the cysteine motif and the frequent occurrence of disulphide-linked dimers in mammalian milks despite the associated risk of mammary amyloidosis, suggest that the dimeric conformation of alpha(S2)-casein is a functional, yet amyloidogenic, structure. Refereed/Peer-reviewed
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- 2021
6. A native chemical chaperone in the human eye lens
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Eugene Serebryany, Sourav Chowdhury, Christopher N. Woods, David C. Thorn, Nicki E. Watson, Arthur McClelland, Rachel E. Klevit, and Eugene I. Shakhnovich
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General Immunology and Microbiology ,Chemistry ,General Neuroscience ,General Medicine ,Protein aggregation ,Cataract ,General Biochemistry, Genetics and Molecular Biology ,law.invention ,Lens (optics) ,Lens protein ,Protein Aggregates ,Metabolomics ,medicine.anatomical_structure ,law ,Lens, Crystalline ,medicine ,Biophysics ,Humans ,Human eye ,Electron microscope ,Chemical chaperone ,Inositol ,Molecular Chaperones - Abstract
Cataract is one of the most prevalent protein aggregation disorders and still the most common cause of vision loss worldwide. The metabolically quiescent core region of the human lens lacks cellular or protein turnover; it has therefore evolved remarkable mechanisms to resist light-scattering protein aggregation for a lifetime. We now report that one such mechanism involves an unusually abundant lens metabolite, myo-inositol, suppressing aggregation of lens crystallins. We quantified aggregation suppression using our previously well-characterized in vitro aggregation assays of oxidation-mimicking human γD-crystallin variants and investigated myo-inositol’s molecular mechanism of action using solution NMR, negative-stain TEM, differential scanning fluorometry, thermal scanning Raman spectroscopy, turbidimetry in redox buffers, and free thiol quantitation. Unlike many known chemical chaperones, myo-inositol’s primary target was neither the native nor the unfolded state of the protein, nor the final aggregated state, but rather the rate-limiting bimolecular step on the aggregation pathway. Given recent metabolomic evidence that it is severely depleted in human cataractous lenses compared to age-matched controls, we suggest that maintaining or restoring healthy levels of myo-inositol in the lens may be a simple, safe, and globally accessible strategy to prevent or delay lens opacification due to age-onset cataract.
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- 2020
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7. The Aggregation of αB-Crystallin under Crowding Conditions Is Prevented by αA-Crystallin: Implications for α-Crystallin Stability and Lens Transparency
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John A. Carver, David C. Thorn, Agata Rekas, Aidan B. Grosas, and Jitendra P. Mata
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genetic structures ,Protein Conformation ,Ficoll ,Cataract formation ,Protein Aggregation, Pathological ,alpha-Crystallin A Chain ,Cataract ,03 medical and health sciences ,0302 clinical medicine ,Structural Biology ,Crystallin ,Lens, Crystalline ,Animals ,alpha-Crystallins ,gamma-Crystallins ,Molecular Biology ,Lens transparency ,030304 developmental biology ,0303 health sciences ,biology ,Contrast variation ,Chemistry ,αb crystallin ,alpha-Crystallin B Chain ,eye diseases ,Chaperone (protein) ,biology.protein ,Biophysics ,Cattle ,sense organs ,Macromolecular crowding ,030217 neurology & neurosurgery ,Molecular Chaperones - Abstract
One of the most crowded biological environments is the eye lens which contains a high concentration of crystallin proteins. The molecular chaperones αB-crystallin (αBc) with its lens partner αA-crystallin (αAc) prevent deleterious crystallin aggregation and cataract formation. However, some forms of cataract are associated with structural alteration and dysfunction of αBc. While many studies have investigated the structure and function of αBc under dilute in vitro conditions, the effect of crowding on these aspects is not well understood despite its in vivo relevance. The structure and chaperone ability of αBc under conditions that mimic the crowded lens environment were investigated using the polysaccharide Ficoll 400 and bovine γ-crystallin as crowding agents and a variety of biophysical methods, principally contrast variation small-angle neutron scattering. Under crowding conditions, αBc unfolds, increases its size/oligomeric state, decreases its thermal stability and chaperone ability, and forms kinetically distinct amorphous and fibrillar aggregates. However, the presence of αAc stabilizes αBc against aggregation. These observations provide a rationale, at the molecular level, for the aggregation of αBc in the crowded lens, a process that exhibits structural and functional similarities to the aggregation of cataract-associated αBc mutants R120G and D109A under dilute conditions. Strategies that maintain or restore αBc stability, as αAc does, may provide therapeutic avenues for the treatment of cataract.
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- 2020
8. Cumulative deamidations of the major lens protein γS-crystallin increase its aggregation during unfolding and oxidation
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Calvin Vetter, Charlie C. Mundorff, Thomas E. Wales, John R. Engen, Kate Halverson, Samuel G. Wheeler, John A. Carver, Kirsten J. Lampi, Ujwal Shinde, David C. Thorn, and Larry L. David
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Full‐Length Papers ,Population ,Protein aggregation ,Biochemistry ,Lens protein ,03 medical and health sciences ,chemistry.chemical_compound ,Protein Aggregates ,Crystallin ,Lens, Crystalline ,Humans ,gamma-Crystallins ,Deamidation ,Guanidine ,education ,Molecular Biology ,030304 developmental biology ,Protein Unfolding ,0303 health sciences ,education.field_of_study ,biology ,030302 biochemistry & molecular biology ,Wild type ,chemistry ,Deamination ,Chaperone (protein) ,Biophysics ,biology.protein - Abstract
Age-related lens cataract is the major cause of blindness worldwide. The mechanisms whereby crystallins, the predominant lens proteins, assemble into large aggregates that scatter light within the lens, and cause cataract, are poorly understood. Due to the lack of protein turnover in the lens, crystallins are long-lived. A major crystallin, γS, is heavily modified by deamidation, in particular at surface-exposed N14, N76, and N143 to introduce negative charges. In this present study, deamidated γS was mimicked by mutation with aspartate at these sites and the effect on biophysical properties of γS was assessed via dynamic light scattering, chemical and thermal denaturation, hydrogen-deuterium exchange, and susceptibility to disulfide cross-linking. Compared with wild type γS, a small population of each deamidated mutant aggregated rapidly into large, light-scattering species that contributed significantly to the total scattering. Under partially denaturing conditions in guanidine hydrochloride or elevated temperature, deamidation led to more rapid unfolding and aggregation and increased susceptibility to oxidation. The triple mutant was further destabilized, suggesting that the effects of deamidation were cumulative. Molecular dynamics simulations predicted that deamidation augments the conformational dynamics of γS. We suggest that these perturbations disrupt the native disulfide arrangement of γS and promote the formation of disulfide-linked aggregates. The lens-specific chaperone αA-crystallin was poor at preventing the aggregation of the triple mutant. It is concluded that surface deamidations cause minimal structural disruption individually, but cumulatively they progressively destabilize γS-crystallin leading to unfolding and aggregation, as occurs in aged and cataractous lenses.
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- 2020
9. Accumulative deamidation of human lens protein γS-crystallin leads to partially unfolded intermediates with enhanced aggregation propensity
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Kirsten J. Lampi, Calvin Vetter, Charlie Mundorff, John A. Carver, Larry L. David, Kate Halverson, Samuel G. Wheeler, and David C. Thorn
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0303 health sciences ,education.field_of_study ,biology ,Chemistry ,030302 biochemistry & molecular biology ,Population ,eye diseases ,Light scattering ,Lens protein ,03 medical and health sciences ,Dynamic light scattering ,Crystallin ,Chaperone (protein) ,biology.protein ,Biophysics ,sense organs ,Asparagine ,Deamidation ,education ,030304 developmental biology - Abstract
Age-related cataract is a major cause of blindness worldwide. Yet, the molecular mechanisms whereby large, light scattering aggregates form is poorly understood, because of the complexity of the aggregates isolated from human lenses. The predominant proteins in the lens are structural proteins called crystallins. The γS-crystallin is heavily modified in cataractous lenses by deamidation, which introduces a negative charge at labile asparagine residues. The effects of deamidation at asparagines, N14, N76, and N143, were mimicked by replacing the asparagine with aspartate using site-directed mutagenesis. The effects of these surface deamidations on the stability, unfolding, and aggregation properties of γS were determined using dynamic light scattering, chemical and thermal-denaturation, and hydrogen-deuterium exchange with mass spectrometry. We found that a small population of all the deamidation mimics aggregated directly into large light scattering bodies with a radius greater than 10 nm that contributed 14-60% of the total scattering intensity compared to 7% for WT under the same conditions. A possible mechanism was identified under partially denaturing conditions, where deamidation led to significantly more rapid unfolding and aggregation particularly for N76D compared to WT. The triple mutant was further destabilized, reflecting the enhanced aggregation properties of N14D and N143D. Thus, the effects of deamidation were both site-specific and cumulative. αA-crystallin was ineffective at acting as a chaperone to prevent the aggregation of destabilized, deamidated γS. It is concluded that surface deamidations, while causing minimal structural disruption individually, progressively destabilize crystallin proteins, leading to their unfolding and precipitation in aged and cataractous lenses.
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- 2020
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10. The Structure and Stability of the Disulfide-Linked γS-Crystallin Dimer Provide Insight into Oxidation Products Associated with Lens Cataract Formation
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David C. Thorn, Colin J. Jackson, Aidan B. Grosas, Peter D. Mabbitt, John A. Carver, and Nicholas J. Ray
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genetic structures ,Protein Conformation ,Dimer ,Cataract formation ,Oxidative phosphorylation ,medicine.disease_cause ,Crystallography, X-Ray ,Cataract ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Structural Biology ,law ,Crystallin ,Lens, Crystalline ,medicine ,Humans ,Disulfides ,gamma-Crystallins ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Disulfide bond ,Glutathione ,eye diseases ,Lens (optics) ,Oxidative Stress ,chemistry ,Biophysics ,sense organs ,Dimerization ,Oxidation-Reduction ,030217 neurology & neurosurgery ,Oxidative stress ,Protein Binding - Abstract
The reducing environment in the eye lens diminishes with age, leading to significant oxidative stress. Oxidation of lens crystallin proteins is the major contributor to their destabilization and deleterious aggregation that scatters visible light, obscures vision, and ultimately leads to cataract. However, the molecular basis for oxidation-induced aggregation is unknown. Using X-ray crystallography and small-angle X-ray scattering, we describe the structure of a disulfide-linked dimer of human γS-crystallin that was obtained via oxidation of C24. The γS-crystallin dimer is stable at glutathione concentrations comparable to those in aged and cataractous lenses. Moreover, dimerization of γS-crystallin significantly increases the protein's propensity to form large insoluble aggregates owing to non-cooperative domain unfolding, as is observed in crystallin variants associated with early-onset cataract. These findings provide insight into how oxidative modification of crystallins contributes to cataract and imply that early-onset and age-related forms of the disease share comparable development pathways.
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- 2018
11. Monitoring the prevention of amyloid fibril formation by α-crystallin
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Roberto Cappai, Lucy Jankova, Agata Rekas, David C. Thorn, and John A. Carver
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Amyloid ,Magnetic Resonance Spectroscopy ,Peptide ,Biochemistry ,chemistry.chemical_compound ,Fibril formation ,Microscopy, Electron, Transmission ,Crystallin ,Animals ,Humans ,Benzothiazoles ,Molecular Biology ,Chromatography, High Pressure Liquid ,chemistry.chemical_classification ,biology ,Chemistry ,Temperature ,Caseins ,alpha-Crystallin B Chain ,Cell Biology ,Nuclear magnetic resonance spectroscopy ,Amyloid fibril ,beta-Crystallins ,Recombinant Proteins ,Kinetics ,Thiazoles ,Monomer ,Chaperone (protein) ,alpha-Synuclein ,biology.protein ,Biophysics ,Cattle ,Molecular Chaperones ,Protein Binding - Abstract
The molecular chaperone, alpha-crystallin, has the ability to prevent the fibrillar aggregation of proteins implicated in human diseases, for example, amyloid beta peptide and alpha-synuclein. In this study, we examine, in detail, two aspects of alpha-crystallin's fibril-suppressing ability: (a) its temperature dependence, and (b) the nature of the aggregating species with which it interacts. First, the efficiency of alpha-crystallin to suppress fibril formation in kappa-casein and alpha-synuclein increases with temperature, despite their rate of fibrillation also increasing in the absence of alpha-crystallin. This is consistent with an increased chaperone ability of alpha-crystallin at higher temperatures to protect target proteins from amorphous aggregation [GB Reddy, KP Das, JM PetrashWK Surewicz (2000) J Biol Chem275, 4565-4570]. Second, dual polarization interferometry was used to monitor real-time alpha-synuclein aggregation in the presence and absence of alphaB-crystallin. In contrast to more common methods for monitoring the time-dependent formation of amyloid fibrils (e.g. the binding of dyes like thioflavin T), dual polarization interferometry data did not reveal any initial lag phase, generally attributed to the formation of prefibrillar aggregates. It was shown that alphaB-crystallin interrupted alpha-synuclein aggregation at its earliest stages, most likely by binding to partially folded monomers and thereby preventing their aggregation into fibrillar structures.
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- 2007
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12. The chaperone action of bovine milk αS1- and αS2-caseins and their associated form αS-casein
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John A. Carver, David C. Thorn, Teresa M. Treweek, and William E. Price
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animal structures ,Hot Temperature ,Biophysics ,Biochemistry ,Heat shock protein ,Casein ,Animals ,HSP70 Heat-Shock Proteins ,Molecular Biology ,chemistry.chemical_classification ,biology ,Clusterin ,Caseins ,Enzyme assay ,Hsp70 ,Heat-Shock Proteins, Small ,Enzyme ,Milk ,chemistry ,Chaperone (protein) ,Hsp33 ,biology.protein ,Cattle ,Oxidation-Reduction - Abstract
α(S)-Casein, the major milk protein, comprises α(S1)- and α(S2)-casein and acts as a molecular chaperone, stabilizing an array of stressed target proteins against precipitation. Here, we report that α(S)-casein acts in a similar manner to the unrelated small heat-shock proteins (sHsps) and clusterin in that it does not preserve the activity of stressed target enzymes. However, in contrast to sHsps and clusterin, α-casein does not bind target proteins in a state that facilitates refolding by Hsp70. α(S)-Casein was also separated into α- and α-casein, and the chaperone abilities of each of these proteins were assessed with amorphously aggregating and fibril-forming target proteins. Under reduction stress, all α-casein species exhibited similar chaperone ability, whereas under heat stress, α-casein was a poorer chaperone. Conversely, α(S2)-casein was less effective at preventing fibril formation by modified κ-casein, whereas α- and α(S1)-casein were comparably potent inhibitors. In the presence of added salt and heat stress, α(S1)-, α- and α(S)-casein were all significantly less effective. We conclude that α(S1)- and α-casein stabilise each other to facilitate optimal chaperone activity of α(S)-casein. This work highlights the interdependency of casein proteins for their structural stability.
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- 2011
13. Corrigendum to 'The chaperone action of bovine milk αS1- and αS2-caseins and their associated form αS-casein' [Arch. Biochem. Biophys. 510 (2011) 42–52]
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David C. Thorn, Teresa M. Treweek, William E. Price, and John A. Carver
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Bovine milk ,biology ,Biochemistry ,Chemistry ,Chaperone (protein) ,Casein ,Biophysics ,biology.protein ,Molecular Biology - Published
- 2011
- Full Text
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