1. DNA Methylation Is Correlated with Gene Expression during Diapause Termination of Early Embryonic Development in the Silkworm (Bombyx mori)
- Author
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Lin-Bao Zhu, Jia-Ping Xu, Liu Minghui, Li Bing, Hui-Hua Cao, Shang-Zhi Zhang, Jie Wang, Shou-Jun Huang, Pei Hu, Ling-Ling You, and Shahzad Toufeeq
- Subjects
0106 biological sciences ,0301 basic medicine ,Cellular differentiation ,Embryonic Development ,Diapause, Insect ,010603 evolutionary biology ,01 natural sciences ,Catalysis ,Article ,lcsh:Chemistry ,Inorganic Chemistry ,Transcriptome ,03 medical and health sciences ,chemistry.chemical_compound ,Epigenome ,Bombyx mori ,Gene expression ,Animals ,Physical and Theoretical Chemistry ,Phosphorylation ,lcsh:QH301-705.5 ,Molecular Biology ,Gene ,Spectroscopy ,Ovum ,Genetics ,DNA methylation ,biology ,Organic Chemistry ,fungi ,General Medicine ,Methylation ,biology.organism_classification ,Bombyx ,Computer Science Applications ,diapause ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,chemistry ,whole-genome sequencing ,Insect Proteins ,Female ,RNA-seq ,DNA - Abstract
DNA modification is a naturally occurring DNA modification in prokaryotic and eukaryotic organisms and is involved in several biological processes. Although genome-wide methylation has been studied in many insects, the understanding of global and genomic DNA methylation during insect early embryonic development, is lacking especially for insect diapause. In this study, we analyzed the relationship between DNA methylomes and transcriptomes in diapause-destined eggs compared to diapause-terminated eggs in the silkworm, Bombyx mori (B. mori). The results revealed that methylation was sparse in this species, as previously reported. Moreover, methylation levels in diapause-terminated eggs (HCl-treated) were 0.05% higher than in non-treated eggs, mainly due to the contribution of CG methylation sites. Methylation tends to occur in the coding sequences and promoter regions, especially at transcription initiation sites and short interspersed elements. Additionally, 364 methylome- and transcriptome-associated genes were identified, which showed significant differences in methylation and expression levels in diapause-destined eggs when compared with diapause-terminated eggs, and 74% of methylome and transcriptome associated genes showed both hypermethylation and elevated expression. Most importantly, Kyoto Encyclopaedia of Genes and Genomes (KEGG) analyses showed that methylation may be positively associated with Bombyx mori embryonic development, by regulating cell differentiation, metabolism, apoptosis pathways and phosphorylation. Through analyzing the G2/M phase-specific E3 ubiquitin-protein ligase (G2E3), we speculate that methylation may affect embryo diapause by regulating the cell cycle in Bombyx mori. These findings will help unravel potential linkages between DNA methylation and gene expression during early insect embryonic development and insect diapause.
- Published
- 2020