1. Identification and characterization of citrulline-modified brain proteins by combining HCD and CID fragmentation.
- Author
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Jin Z, Fu Z, Yang J, Troncosco J, Everett AD, and Van Eyk JE
- Subjects
- Alzheimer Disease metabolism, Animals, Brain enzymology, Cattle, Chromatography, Liquid, Citrulline chemistry, Glial Fibrillary Acidic Protein chemistry, Glial Fibrillary Acidic Protein isolation & purification, Humans, Hydrolases metabolism, Mass Spectrometry, Myelin Basic Protein chemistry, Myelin Basic Protein isolation & purification, Nervous System Diseases metabolism, Neurogranin chemistry, Neurogranin isolation & purification, Protein-Arginine Deiminases, Brain metabolism, Citrulline metabolism, Glial Fibrillary Acidic Protein analysis, Myelin Basic Protein analysis, Neurogranin analysis
- Abstract
Citrullination is a protein PTM of arginine residues catalyzed by peptidylarginine deiminase. Protein citrullination has been detected in the CNS and associated with a number of neurological diseases. However, identifying citrullinated proteins from complex mixtures and pinpointing citrullinated residues have been limited. Using RP LC and high-resolution MS, this study determined in vitro citrullination sites of glial fibrillary acid protein (GFAP), neurogranin (NRGN/RC3), and myelin basic protein (MBP) and in vivo sites in brain protein extract. Human GFAP has five endogenous citrullination sites, R30, R36, R270, R406, and R416, and MBP has 14 in vivo citrullination sites. Human NRGN/RC3 was found citrullinated at residue R68. The sequence of citrullinated peptides and citrullination sites were confirmed from peptides identified in trypsin, Lys-C, and Glu-C digests. The relative ratio of citrullination was estimated by simultaneous identification of citrullinated and unmodified peptides from Alzheimer's and control brain samples. The site occupancy of citrullination at the residue R68 of NRGN ranged from 1.6 to 9.5%. Compared to CID, higher-energy collisional dissociation (HCD) mainly produced protein backbone fragmentation for citrullinated peptides. CID-triggered HCD fragmentation is an optimal approach for the identification of citrullinated peptides in complex protein digests., (© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2013
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