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Success of stream restoration can be difficult to define because many interacting abiotic and biotic factors across spatio‐temporal scales can have measurable effects. Consequently, failure in habitat restoration to achieve targeted biological goals may reflect interactions of habitat restoration with unaccounted risks that have yet to be addressed on the landscape. This is particularly true within invaded landscapes, where habitat restoration can benefit non‐native competitors as much as the native fishes for which restoration is designed. We tested for interacting effects of a reach scale habitat restoration effort and non‐native trout competition on habitat use by a brook trout (Salvelinus fontinalis) metapopulation within a productive main stem corridor of the Shavers Fork watershed, West Virginia. We used a joint species occupancy model within a BACI sampling design to show that brook trout occupancy of main stem habitat was highest post‐restoration within restored sampling reaches, but this benefit to native brook trout was conditional on brown trout (Salmo trutta) not being present within the main stem habitat. Collectively these results indicate that habitat restoration was only beneficial for native brook trout when non‐native trout were absent from the restored sampling area. Proactive approaches to restoration will be integral for supporting resilient ecosystems in response to future anthropogenic threats (e.g. climate change), and we have shown that such actions will only be successful if non‐native competitors do not also benefit from the restoration actions. [ABSTRACT FROM AUTHOR]

The addition of limestone sand directly to streams is an effective method for treating chemical and biological issues associated with acid precipitation, a common concern in many Appalachian watersheds. The unique water chemistry created by limestone remediation potentially creates a "mark" in fish hard parts (e.g., otoliths and fin rays) that can be used to identify fish from remediated habitats, even after fish disperse into the surrounding riverscape. We tested whether elevated concentrations of calcium from a limestone‐treated stream could be identified by microchemistry in the otoliths of Brook Trout Salvelinus fontinalis and whether the concentrations could distinguish fish among treated and untreated habitats within the upper Shavers Fork watershed in West Virginia. Calcium concentrations in water were similar between the treated headwater stream and the control stream. Multivariate ANOVA and Bonferroni post hoc analyses indicated that calcium and strontium concentrations were significantly higher in Brook Trout otoliths from the treatment stream than in those from the control stream. Our results suggest that hard‐part microchemistry is a promising tool for identifying locally produced fish from limestone‐remediated streams in the surrounding riverscape. [ABSTRACT FROM AUTHOR]

We quantified stream temperature response to in‐stream habitat restoration designed to improve thermal suitability and resiliency of a high‐elevation Appalachian stream known to support a temperature‐limited brook trout population. Our specific objectives were to determine if: (1) construction of deep pools created channel unit‐scale thermal refugia and (2) reach scale stream channel reconfiguration reduced peak water temperatures along a longitudinal continuum known to be highly susceptible to summer‐time warming. Contrary to expectations, constructed pools did not significantly decrease channel unit‐scale summer water temperatures relative to paired control sites. This suggests that constructed pools did not successfully intercept a cool groundwater source. However, we did find a significant effect of stream channel restoration on reach‐scale thermal regimes. Both mean and maximum daily stream temperatures experienced significantly reduced warming trends in restored sections relative to control sections. Furthermore, we found that restoration efforts had the greatest effect on stream temperatures downstream of large tributaries. Restoration appears to have significantly altered thermal regimes within upper Shavers Fork, largely in response to changes in channel morphology that facilitated water movement below major cold‐water inputs. Decreased longitudinal warming will likely increase the thermal resiliency of the Shavers Fork main‐stem, sustaining the ability of these key large river habitats to continue supporting critical metapopulation processes (e.g. supplemental foraging and dispersal among tributary populations) in the face of climate change. [ABSTRACT FROM AUTHOR]

We used direct observation via snorkeling surveys to quantify microhabitat use by native brook (Salvelinus fontinalis) and non‐native brown (Salmo trutta) and rainbow (Onchorynchus mykiss) trout occupying natural and restored pool habitats within a large, high‐elevation Appalachian river, United States. Permutational multivariate analysis of variance (PERMANOVA) and subsequent two‐way analysis of variance (ANOVA) indicated a significant difference in microhabitat use by brook and non‐native trout within restored pools. We also detected a significant difference in microhabitat use by brook trout occupying pools in allopatry versus those occupying pools in sympatry with non‐native trout—a pattern that appears to be modulated by size. Smaller brook trout often occupied pools in the absence of non‐native species, where they used shallower and faster focal habitats. Larger brook trout occupied pools with, and utilized similar focal habitats (i.e. deeper, slower velocity) as, non‐native trout. Non‐native trout consistently occupied more thermally suitable microhabitats closer to cover as compared to brook trout, including the use of thermal refugia (i.e. ambient–focal temperature >2°C). These results suggest that non‐native trout influence brook trout use of restored habitats by: (1) displacing smaller brook trout from restored pools, and (2) displacing small and large brook trout from optimal microhabitats (cooler, deeper, and lower velocity). Consequently, benefits of habitat restoration in large rivers may only be fully realized by brook trout in the absence of non‐native species. Future research within this and other large river systems should characterize brook trout response to stream restoration following removal of non‐native species. [ABSTRACT FROM AUTHOR]

We conducted a large-scale assessment of unconventional oil and gas (UOG) development effects on brook trout ( Salvelinus fontinalis ) distribution. We compiled 2231 brook trout collection records from the Upper Susquehanna River Watershed, USA. We used boosted regression tree (BRT) analysis to predict occurrence probability at the 1:24,000 stream-segment scale as a function of natural and anthropogenic landscape and climatic attributes. We then evaluated the importance of landscape context (i.e., pre-existing natural habitat quality and anthropogenic degradation) in modulating the effects of UOG on brook trout distribution under UOG development scenarios. BRT made use of 5 anthropogenic (28% relative influence) and 7 natural (72% relative influence) variables to model occurrence with a high degree of accuracy [Area Under the Receiver Operating Curve (AUC) = 0.85 and cross-validated AUC = 0.81]. UOG development impacted 11% ( n = 2784) of streams and resulted in a loss of predicted occurrence in 126 (4%). Most streams impacted by UOG had unsuitable underlying natural habitat quality ( n = 1220; 44%). Brook trout were predicted to be absent from an additional 26% ( n = 733) of streams due to pre-existing non-UOG land uses (i.e., agriculture, residential and commercial development, or historic mining). Streams with a predicted and observed (via existing pre- and post-disturbance fish sampling records) loss of occurrence due to UOG tended to have intermediate natural habitat quality and/or intermediate levels of non-UOG stress. Simulated development of permitted but undeveloped UOG wells ( n = 943) resulted in a loss of predicted occurrence in 27 additional streams. Loss of occurrence was strongly dependent upon landscape context, suggesting effects of current and future UOG development are likely most relevant in streams near the probability threshold due to pre-existing habitat degradation. [ABSTRACT FROM AUTHOR]

Coldwater fishes in streams, such as brook trout ( Salvelinus fontinalis), typically are headwater specialists that occasionally expand distributions downstream to larger water bodies. It is unclear, however, whether larger streams function simply as dispersal corridors connecting headwater subpopulations, or as critical foraging habitat needed to sustain large mobile brook trout. Stable isotopes (δC and δN) and a hierarchical Bayesian mixing model analysis was used to identify brook trout that foraged in main stem versus headwater streams of the Shavers Fork watershed, West Virginia. Headwater subpopulations were composed of headwater and to a lesser extent main stem foraging individuals. However, there was a strong relationship between brook trout size and main stem prey contributions. The average brook trout foraging on headwater prey were limited to 126 mm standard length. This size was identified by mixing models as a point where productivity support switched from headwater to main stem dependency. These results, similar to other studies conducted in this watershed, support the hypothesis that productive main stem habitat maintain large brook trout and potentially facilitates dispersal among headwater subpopulations. Consequently, loss of supplementary main stem foraging habitats may explain loss of large, mobile fish and subsequent isolation of headwater subpopulations in other central Appalachian watersheds. [ABSTRACT FROM AUTHOR]

Spatial population models predict strong density-dependence and relatively stable population dynamics near the core of a species' distribution with increasing variance and importance of density-independent processes operating towards the population periphery. Using a 10-year data set and an information-theoretic approach, we tested a series of candidate models considering density-dependent and density-independent controls on brook trout population dynamics across a core-periphery distribution gradient within a central Appalachian watershed. We sampled seven sub-populations with study sites ranging in drainage area from 1.3–60 km2 and long-term average densities ranging from 0.335–0.006 trout/m. Modeled response variables included per capita population growth rate of young-of-the-year, adult, and total brook trout. We also quantified a stock-recruitment relationship for the headwater population and coefficients of variability in mean trout density for all sub-populations over time. Density-dependent regulation was prevalent throughout the study area regardless of stream size. However, density-independent temperature models carried substantial weight and likely reflect the effect of year-to-year variability in water temperature on trout dispersal between cold tributaries and warm main stems. Estimated adult carrying capacities decreased exponentially with increasing stream size from 0.24 trout/m in headwaters to 0.005 trout/m in the main stem. Finally, temporal variance in brook trout population size was lowest in the high-density headwater population, tended to peak in mid-sized streams and declined slightly in the largest streams with the lowest densities. Our results provide support for the hypothesis that local density-dependent processes have a strong control on brook trout dynamics across the entire distribution gradient. However, the mechanisms of regulation likely shift from competition for limited food and space in headwater streams to competition for thermal refugia in larger main stems. It also is likely that source-sink dynamics and dispersal from small headwater habitats may partially influence brook trout population dynamics in the main stem. [ABSTRACT FROM AUTHOR]

We quantified movements of brook trout Salvelinus fontinalis and brown trout Salmo trutta in a complex riverscape characterized by a large, open-canopy main stem and a small, closed-canopy tributary in eastern West Virginia, USA. Our objectives were to quantify the overall rate of trout movement and relate movement behaviors to variation in streamflow, water temperature, and access to coldwater refugia. The study area experienced extremely high seasonal, yearly, and among-stream variability in water temperature and flow. The relative mobility of brook trout within the upper Shavers Fork watershed varied significantly depending on whether individuals resided within the larger main stem or the smaller tributary. The movement rate of trout inhabiting the main stem during summer months (50 m/d) was an order of magnitude higher than that of tributary fish (2 m/d). Movement rates of main-stem-resident brook trout during summer were correlated with the maximum water temperature experienced by the fish and with the fish's initial distance from a known coldwater source. For main-stem trout, use of microhabitats closer to cover was higher during extremely warm periods than during cooler periods; use of microhabitats closer to cover during warm periods was also greater for main-stem trout than for tributary inhabitants. Main-stem-resident trout were never observed in water exceeding 19.5°C. Our study provides some of the first data on brook trout movements in a large Appalachian river system and underscores the importance of managing trout fisheries in a riverscape context. Brook trout conservation in this region will depend on restoration and protection of coldwater refugia in larger river main stems as well as removal of barriers to trout movement near tributary and main-stem confluences. Received September 16, 2011; accepted March 23, 2012 [ABSTRACT FROM PUBLISHER]

We developed and validated a predictive model of water temperature that could be applied to mapped stream segments in a West Virginia, USA watershed. We then tested the hypothesis that local water temperature and the topology of stream thermal networks interact to determine the distribution of two fishes known to differ in their thermal preference - smallmouth bass (Micropterus dolomieu) and brook trout (Salvelinus fontinalis). Two measures of regional thermal topology were constructed -- mean distance to the nearest five coldwater stream segments and distance to the nearest warmwater stream segment. Consistent with expectations, brook trout were more likely to be found in colder streams, and smallmouth bass were in wanner streams. However, brook trout distributions were statistically independent of the regional thermal context suggesting that regional thermal conditions have less influence on brook trout than local thermal conditions in this system. In contrast, there was a significant effect of stream network topology on the distribution of smallmouth bass. Bass were often present in coolwater streams located in close proximity to warmwater mainstems but not in coolwater streams highly isolated from warm water. Furthermore, sympatry in these two species was associated with cool- and coldwater streams located in close proximity to warmwater streams. These findings indicate that overall fish assemblage response to thermal conditions may be the result of species-specific responses to both local thermal conditions and the regional topology of cold, cool, and warmwater streams. [ABSTRACT FROM AUTHOR]

Large-scale culvert replacement programs could benefit migratory fish populations by reconnecting reproductive and foraging habitats in fragmented watersheds. The objectives of this study were to: (1) identify stream and culvert characteristics contributing to fish passage barriers within an Appalachian watershed, U.S.A.; (2) quantify the total amount of Brook trout ( Salvelinus fontinalis) reproductive habitat isolated above culverts; and (3) use an ecological currency to identify culvert replacement priorities and stream mitigation credit opportunities. We surveyed 120 state-owned culverts and used a fish passage assessment filter to determine the “passability” of each culvert. We then constructed a geographic information system stream network model to quantify the amount of trout reproductive habitat isolated by culverts. Ninety-seven percent of surveyed culverts were classified as obstacles or complete barriers to trout dispersal. Culvert impassability was higher in small streams with slopes exceeding 3–5%, suggesting a direct relationship between slope and impassability. Thirty-three percent of Brook trout reproductive habitat, representing over 200 km of stream, was isolated by culverts. This is a conservative estimate, because we did not survey privately or federally owned culverts. The top 20 prioritized culverts accounted for nearly half of the habitat loss. Our results indicate that standard culvert designs placed in streams with slopes exceeding 5% consistently produce trout dispersal barriers and should be avoided during new road construction. The process developed here provides an efficient method for identifying culvert replacement priorities and may be used to maximize watershed scale benefits of stream restoration. [ABSTRACT FROM AUTHOR]

The extent of impairment to some Appalachian watersheds from acid precipitation is so extreme that watershed scale analytical tools are needed to help guide cost-effective management decisions. The objective of this study was to develop a measure of the functional value of streams as potential areas for juvenile Brook trout recruitment. This measure, which we term“weighted potential recruitment area” (WPRA), is a function of the expected Brook trout spawning intensity and juvenile survivorship. Estimates of WPRA for each stream segment were then used to identify restoration priorities and optimal restoration programs in the upper Shavers Fork watershed in West Virginia, U.S.A. Using this approach, we determined that the watershed has lost nearly 80% of its historic juvenile recruitment potential as a result of acid precipitation. We also determined that of the 145 stream segments in the watershed, eight critical stream segments account for nearly 20% of the loss. The costs and ecological benefits of a series of five alternative restoration programs were then assessed using an ArcGIS model (Environmental Systems Research Institute, Redlands, CA, U.S.A.). This approach identified two“optimal” alternatives: (1) a low-cost, moderate-benefit approach that would use existing rail access to treat acidification in three critical headwater locations and (2) a high-cost, high-benefit approach that would use aerial limestone application to treat numerous acidic tributaries near their source. The measure of stream ecological value that we developed was effective in identifying critical restoration priorities and optimal restoration strategies in this watershed. A similar procedure could be used to guide watershed restoration decisions throughout the Appalachian region. [ABSTRACT FROM AUTHOR]