1. Extensive CFTR sequencing through NGS in Brazilian individuals with cystic fibrosis: unravelling regional discrepancies in the country
- Author
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Luiz Vicente Ribeiro Ferreira da Silva Filho, Paulo José Cauduro Maróstica, Rodrigo Abensur Athanazio, Francisco José Caldeira Reis, Neiva Damaceno, Angela Tavares Paes, Adilson Yuuji Hira, David Schlesinger, Fernando Kok, Margarida D. Amaral, Mara Lícia Machado Antunes, Lilian Cristina Ferreira Andries, Virginia Auxiliadora Freitas de Castro, Fabíola Villac Adde, Maria Fernanda Botelho Hernandez Perez, Vera Maria Dantas, Luciana de Freitas Velloso Monte, Adriana Goya, Samia Rached, Lusmaia Damaceno Camargo Costa, Lorenna Junqueira Almeida Prado, Elizabet Vilar Guimarães, Ana Cristina de Carvalho Fernandez Fonseca, Marina Pires Nishi, Carlos Antônio Riedi, Nelson Augusto Rosario Filho, Mariane Gonçalves Martynychen Canan, Maria Inez Machado Fernandes, Albin Eugenio Augustin, Rosângela Villela Garcia, Maria Margarete da Silva Zembrzuski, Kátia Izabel de Oliveira, Anneliese Hoffmann, Cláudio Ricachinevsky, Paulo de Tarso Roth Dalcin, Bruna Ziegler, Daniela de Souza Paiva Borgli, Daniele Menezes Torres Ferrao, Elizabeth Passos Simoes da Silva, Maria Angelica Santana, Maria Amenaide Carvalho Alves de Sousa, Claudia de Castro e Silva, Evalto Monte de Araujo Filho, Tiago Neves Veras, Noberto Ludwig Neto, Luiz Roberto Agea Cutolo, Alberto Andrade Vergara, Suzana Fonseca Oliveira Melo, Maria do Espírito Santo Almeida Moreira, Roberta de Cássia Nunes Cruz Melotti, Fernanda Barbosa dos Santos Malini, Marcelo Bicalho de Fuccio, Bruno Porto Pessoa, Concetta Esposito, Paulo Cesar Kussek, Glaunir Maria Foletto, Leonardo Araujo Pinto, Matias Epifanio, Marcelo Tadday Rodrigues, Marta Cristina Duarte, Daniela Gois Meneses, Valéria de Carvalho Martins, Sônia Elenita Lopes Valente, Arlan de Azevedo Ferreira, Constantino Giovanni Braga Cartaxo, Denise Maria Costa Haidar, Mônica de Cássia Firmida, Marcos César Santos de Castro, Edna Lucia Santos de Souza, Lais Ribeiro Mota, Katharina Vidal de Negreiros Moura, Joaquim Carlos Rodrigues, Cleyde Myriam Aversa Nakaie, Tânia Wrobel Folescu, Izabela Sad, Murilo Carlos Amorim de Britto, Carlos Henrique Medeiros Castelletti, Cláudia Mello Gonçalves, Lucia Muramatu, Gilberto Bueno Fischer, Giesela Fleischer Ferrari, Luciana Oliveira Silvano Tostes, Carmen Silvia Bertuzzo, Fernando Augusto de Lima Marson, Sonia Mayumi Chiba, and Marcela Duarte De Sillos
- Subjects
Male ,0301 basic medicine ,Pulmonary and Respiratory Medicine ,Cystic Fibrosis ,Genotype ,Cystic Fibrosis Transmembrane Conductance Regulator ,Logistic regression ,Cystic fibrosis ,DNA sequencing ,03 medical and health sciences ,0302 clinical medicine ,Humans ,Medicine ,Registries ,Allele ,Child ,Genotyping ,Newborn screening ,Patient registry ,business.industry ,Genetic Variation ,Infant ,medicine.disease ,3. Good health ,030104 developmental biology ,030228 respiratory system ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Female ,business ,Brazil ,Demography - Abstract
Background The Brazilian population has a tri-hybrid composition with a high degree of ethnic admixture. We hypothesized that Brazilian individuals with CF from different Brazilian regions have a specific distribution of CFTR variants. Methods Individuals with CF with data available in the Patient Registry and without an established genotype were submitted to CFTR sequencing by Next Generation Sequencing (NGS) methodology, and results were anonymously incorporated to the Registry Database. Genotyping results were expressed as ‘positive’, ‘inconclusive’ or ‘negative’. Logistic regression models were performed to investigate the association between demographic/clinical variables and genotyping results. Mediation analysis was conducted to estimate direct and indirect effects of Brazilian region on a binary positive genotyping response. Results In October 2017, data from 4,654 individuals with CF were available, and 3,104(66.7%) of them had a genotyping result. A total of 236 variants (114 new variants) were identified, with F508del identified in 46% of the alleles tested. Genotyping revealed 2,002(64.5%) individuals positive, 757(24.4%) inconclusive and 345(11.1%) negative. Distribution of genotype categories was markedly different across Brazilian Regions, with greater proportions of negative individuals in the North (45%) and Northeast (26%) regions. Newborn screening (CF-NBS) and age at diagnosis were identified as mediators of the effect of Brazilian region on a positive genotyping result. Conclusions This large initiative of CFTR genotyping showed significant regional discrepancies in Brazil, probably related to socio-economic conditions, lack of adequate CF-NBS and poor access to reliable sweat testing. These results may be useful to indicate Regions where CF care demands more attention.
- Published
- 2021
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