1. Genome-Scale Profiling of Circulating Cell-Free DNA Signatures for Early Detection of Hepatocellular Carcinoma in Patients with Cirrhosis
- Author
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Yu-Jing Gao, Chun-Xiu Zhong, Rong Fan, Chun-Ying Wang, Lutao Du, Jing Zhang, Jingfeng Liu, He-Ping Hu, Yun-Song Qian, Yanhang Gao, Fei Kong, Guo-Qing Jiang, Lei Chen, Bo Zheng, Jie Xia, Guohong Deng, Fu-Ming Sun, Hui Wang, Yi-Nong Ye, Yuan Yang, Xiao-Tang Fan, Hao Wen, Feng Shen, Jinlin Hou, Dan Zheng, Wang Yin, Jian Sun, Hua-Dong Yan, Hong-Yang Wang, Yingchao Wang, Ghassan K. Abou-Alfa, Lin Wu, Qing-Zheng Zhang, Jin-Ming Chen, Jian Bai, Yan-Long Yu, Chuanxin Wang, Min-Feng Liang, and Qiang Gao
- Subjects
medicine.medical_specialty ,Cirrhosis ,business.industry ,Early detection ,medicine.disease ,Institutional review board ,Gastroenterology ,digestive system diseases ,Circulating Cell-Free DNA ,BCLC Stage ,Internal medicine ,Hepatocellular carcinoma ,Cohort ,medicine ,In patient ,business - Abstract
Background: Patients with liver cirrhosis are at higher risk of developing hepatocellular carcinoma (HCC). Due to the low accuracy of current methods, new non-invasive strategies for early HCC diagnosis in cirrhotic patients are needed. Methods: A case-control study recruited a total of 2,250 patients with liver cirrhosis (LC), 508 with HCC, and 476 healthy controls (CTRL), from 13 hospitals in 11 provinces of China. Four genomic features of cell-free DNA (cfDNA), including nucleosome footprint, fragmentation, base mismatch and 5-hydroxymethylcytosines were profiled. Training and validation cohorts helped develop the integrated diagnostic model, and a test cohort was used to evaluate its performance. Findings: We established a classifier of each feature for HCC against non-HCC (cirrhosis & healthy control). By integrating these four genomic features, we developed a novel diagnostic model (HIFI, 5-Hydroxymethylcytosines/base mIsmatch/Fragmentation/nucleosome footprInt), and achieved a higher accuracy in differentiating HCCs from liver cirrhosis (AUC=0.997 [0.994-0.999], sensitivity 95.42%, specificity 97.67% in test set) than AFP or PIVKA-II, irrespective of the following demographics and clinical features, age, HBV status, Child-Pugh score, BCLC stage, tumor size, and AFP status. In AFP positive (AFP>20ug/L) liver cirrhosis patients and AFP/PIVKA-II negative (AFP 400μg/L: 100% in liver cirrhosis patients; AFP
- Published
- 2020
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