1. Development of multiplex digital PCR assays for the detection of PIK3CA mutations in the plasma of metastatic breast cancer patients
- Author
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Fanny Le Du, Florence Godey, Thibault De La Motte Rouge, Christophe Perrin, Héloïse Bourien, Angélique Brunot, Julien Corné, Véronique Diéras, Véronique Quillien, Laurence Crouzet, C. Lefeuvre-Plesse, Lucie Robert, Centre Eugène Marquis (CRLCC), Chemistry, Oncogenesis, Stress and Signaling (COSS), Université de Rennes (UR)-CRLCC Eugène Marquis (CRLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM), This work was supported by the association ‘La Vannetaise’, a French association for the prevention and awareness of cancer in women., Jonchère, Laurent, Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-CRLCC Eugène Marquis (CRLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM)
- Subjects
Molecular biology ,medicine.disease_cause ,Polymerase Chain Reaction ,chemistry.chemical_compound ,0302 clinical medicine ,Medicine ,Multiplex ,Digital polymerase chain reaction ,Child ,Cancer ,0303 health sciences ,Mutation ,Multidisciplinary ,Screening assay ,Metastatic breast cancer ,3. Good health ,Oncology ,Child, Preschool ,030220 oncology & carcinogenesis ,Clinical validity ,Female ,Cell-Free Nucleic Acids ,Adolescent ,Class I Phosphatidylinositol 3-Kinases ,Science ,Breast Neoplasms ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Article ,Young Adult ,03 medical and health sciences ,[SDV.CAN] Life Sciences [q-bio]/Cancer ,Biomarkers, Tumor ,Genetics ,Humans ,neoplasms ,030304 developmental biology ,Base Sequence ,business.industry ,Infant, Newborn ,Infant ,Reproducibility of Results ,medicine.disease ,Circulating free DNA ,chemistry ,Cancer research ,business ,Biomarkers ,DNA - Abstract
With the approval of new therapies targeting the PI3K pathway, the detection of PIK3CA mutations has become a key factor in treatment management for HR+/HER2− metastatic breast cancer (MBC). We developed multiplex digital PCR (dPCR) assays to detect and quantify PIK3CA mutations. A first screening assay allows the detection of 21 mutations, with a drop-off system targeting the 542–546 hotspot mutations combined with the simultaneous detection of N345K, C420R, H1047L and H1047R mutations. In the case of a positive result, a sequential strategy based on other assays that we have developped allows for precise mutation identification. Clinical validity was determined by analyzing plasma circulating free DNA (cfDNA) from 213 HR+/HER2− MBC samples, as well as DNA extracted from 97 available matched tumors from 89 patients. Our assays have shown reliable specificity, accuracy and reproducibility, with limits of blank of three and four droplets for the screening assay. Sixty-eight patients (32%) had at least one PIK3CA mutation detectable in their plasma, and we obtained 83.1% agreement between the cfDNA analysis and the corresponding tumors. The high sensitivity and robustness of these new dPCR assays make them well-suited for rapid and cost-effective detection of PIK3CA mutations in the plasma of MBC patients.
- Published
- 2021
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