1. Harnessing machine learning for development of microbiome therapeutics
- Author
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Abdul Basit, Mine Orlu, Moe Elbadawi, Simon Gaisford, and Laura E. McCoubrey
- Subjects
0301 basic medicine ,Microbiology (medical) ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Big data ,microbiome ,microbial therapeutics ,RC799-869 ,Review ,Biology ,Machine learning ,computer.software_genre ,Microbiology ,clinical translation ,Machine Learning ,03 medical and health sciences ,Human health ,0302 clinical medicine ,Microbiome ,colonic drug delivery ,Precision Medicine ,business.industry ,drug product development ,Microbiota ,Gastroenterology ,COVID-19 ,pharmaceutical sciences ,Diseases of the digestive system. Gastroenterology ,Precision medicine ,artificial intelligence ,personalized medicines ,030104 developmental biology ,Infectious Diseases ,030211 gastroenterology & hepatology ,Artificial intelligence ,business ,computer - Abstract
The last twenty years of seminal microbiome research has uncovered microbiota’s intrinsic relationship with human health. Studies elucidating the relationship between an unbalanced microbiome and disease are currently published daily. As such, microbiome big data have become a reality that provide a mine of information for the development of new therapeutics. Machine learning (ML), a branch of artificial intelligence, offers powerful techniques for big data analysis and prediction-making, that are out of reach of human intellect alone. This review will explore how ML can be applied for the development of microbiome-targeted therapeutics. A background on ML will be given, followed by a guide on where to find reliable microbiome big data. Existing applications and opportunities will be discussed, including the use of ML to discover, design, and characterize microbiome therapeutics. The use of ML to optimize advanced processes, such as 3D printing and in silico prediction of drug-microbiome interactions, will also be highlighted. Finally, barriers to adoption of ML in academic and industrial settings will be examined, concluded by a future outlook for the field.
- Published
- 2021