1. Quantification of cell-free DNAfor the analysis of CD19-CAR-T cells during lymphoma treatment
- Author
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Julia Thomson, Thomas Mika, Verena Nilius-Eliliwi, Susanne Klein-Scory, Gerald Wulf, Roland Schroers, Alexander Baraniskin, and Deepak Vangala
- Subjects
CAR-T cells ,medicine.medical_treatment ,Cell ,lymphoma ,QH426-470 ,CD19-directed chimeric antigen receptor T cells ,CD19 ,Flow cytometry ,cell-free DNA ,03 medical and health sciences ,0302 clinical medicine ,Cancer immunotherapy ,axi-cel ,medicine ,digital-droplet PCR (ddPCR) ,Genetics ,Liquid biopsy ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,cancer immunotherapy ,biology ,medicine.diagnostic_test ,liquid biopsy ,QH573-671 ,business.industry ,medicine.disease ,Chimeric antigen receptor ,3. Good health ,Lymphoma ,medicine.anatomical_structure ,Cell-free fetal DNA ,030220 oncology & carcinogenesis ,biology.protein ,Cancer research ,Molecular Medicine ,Original Article ,business ,Cytology - Abstract
Chimeric antigen receptor (CAR)-T cells are increasingly used for the treatment of hematologic malignancies. Treatment success relies highly upon sufficient expansion of CAR-T effector cells. Accordingly, longitudinal quantification of CAR-T cells during therapy is clinically important. Techniques to quantify CAR-T cells in patient blood samples are based on flow cytometry and PCR. However, cellular kinetics of CAR-T cells are very complex and under current investigation. In this study, feasibility of CAR-T cell quantification by cell-free DNA (cfDNA) was analyzed. cfDNA isolated from 74 blood samples of 12 patients during lymphoma treatment with the anti-CD19 CAR-T cell product axicabtagene ciloleucel (axi-cel) were analyzed. Concentrations of cfDNA specific for the CAR-T gene construct (cfCAR-DNA) and a reference gene were quantified by a newly designed digital-droplet PCR (ddPCR) assay. Detection and quantification of cfCAR-DNA was feasible and reliable for all patients included. Relative quantification of cfCAR-DNA compared to a reference gene, suitable for genomic DNA analysis, was heterogeneous in treatment responders and non-responders. In contrast, parallel analyses of cfCAR-DNA and reference cfDNA in a patient-specific approach gave insight into active lymphoma killing and treatment responses. In summary, plasma cfDNA determination in lymphoma patients is a promising tool for future clinical decision making., Graphical abstract, The study proves the feasibility to quantify cell-free CAR-DNA in lymphoma patients during CAR-T cell treatment by a novel digital-droplet PCR assay. Combined analysis of cell-free CAR-DNA and reference cell-free DNA displays CAR-T cell-mediated lymphoma killing in individual patients.
- Published
- 2021