1. Transcriptomic classes of BCR-ABL1 lymphoblastic leukemia.
- Author
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Kim, Jaeseung C, Chan-Seng-Yue, Michelle, Ge, Sabrina, Zeng, Andy GX, Ng, Karen, Gan, Olga I, Garcia-Prat, Laura, Flores-Figueroa, Eugenia, Woo, Tristan, Zhang, Amy Xin Wei, Arruda, Andrea, Chithambaram, Shivapriya, Dobson, Stephanie M, Khoo, Amanda, Khan, Shahbaz, Ibrahimova, Narmin, George, Ann, Tierens, Anne, Hitzler, Johann, Kislinger, Thomas, Dick, John E, McPherson, John D, Minden, Mark D, and Notta, Faiyaz
- Subjects
Humans ,Fusion Proteins ,bcr-abl ,Protein Kinase Inhibitors ,Gene Expression Profiling ,Cell Differentiation ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,Transcriptome ,Hematology ,Pediatric Cancer ,Rare Diseases ,Human Genome ,Pediatric Research Initiative ,Stem Cell Research ,Cancer ,Childhood Leukemia ,Pediatric ,Genetics ,2.1 Biological and endogenous factors ,Aetiology ,Biological Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
In BCR-ABL1 lymphoblastic leukemia, treatment heterogeneity to tyrosine kinase inhibitors (TKIs), especially in the absence of kinase domain mutations in BCR-ABL1, is poorly understood. Through deep molecular profiling, we uncovered three transcriptomic subtypes of BCR-ABL1 lymphoblastic leukemia, each representing a maturation arrest at a stage of B-cell progenitor differentiation. An earlier arrest was associated with lineage promiscuity, treatment refractoriness and poor patient outcomes. A later arrest was associated with lineage fidelity, durable leukemia remissions and improved patient outcomes. Each maturation arrest was marked by specific genomic events that control different transition points in B-cell development. Interestingly, these events were absent in BCR-ABL1+ preleukemic stem cells isolated from patients regardless of subtype, which supports that transcriptomic phenotypes are determined downstream of the leukemia-initialing event. Overall, our data indicate that treatment response and TKI efficacy are unexpected outcomes of the differentiation stage at which this leukemia transforms.
- Published
- 2023