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Coastal landscapes are naturally shifting mosaics of distinct ecosystems that are rapidly migrating with sea-level rise. Previous work illustrates that transitions among individual ecosystems have disproportionate impacts on the global carbon cycle, but this cannot address nonlinear interactions between multiple ecosystems that potentially cascade across the coastal landscape. Here, we synthesize carbon stocks, accumulation rates, and regional land cover data over 36 years (1984 and 2020) for a variety of ecosystems across a large portion of the rapidly transgressing mid-Atlantic coast. The coastal landscape of the Virginia Eastern Shore consists of temperate forest, salt marsh, seagrass beds, barrier islands, and coastal lagoons. We found that rapid losses and gains within individual ecosystems largely offset each other, which resulted in relatively stable areas for the different ecosystems, and a 4% (196.9 Gg C) reduction in regional carbon storage. However, new metrics of carbon replacement times indicated that it would take only ~ 7 years of carbon accumulation in surviving ecosystems to compensate this loss. Our findings reveal unique compensatory mechanisms at the scale of entire landscapes that quickly absorb losses and facilitate increased regional carbon storage in the face of historical and contemporary sea-level rise. However, the strength of these compensatory mechanisms may diminish as climate change exacerbates the magnitude of carbon losses. [ABSTRACT FROM AUTHOR]

Megaripples are current‐generated seafloor bedforms of well‐sorted sand or gravel and wavelengths over 1 m. In this aquatic eddy covariance study, we measured large rates of benthic primary production and respiration for a shallow‐water sandy megaripple field exposed to strong tidally driven currents and intense sunlight. Current and light were the main short‐term drivers of a highly dynamic oxygen exchange. Daytime oxygen release as high as 300 mmol m−2 d−1 and nighttime oxygen uptake up to −100 mmol m−2 d−1 were likely sustained by current‐driven transport of oxygen, nutrients, and organic matter (fuel) into and out of the sand and superimposed by rapid internal cycling. Seasonal differences in temperature (45%) and light (69%) between April and September were the main long‐term drivers of substantially greater rates of gross primary production and respiration in September. The megaripples functioned as an intense metabolic hotspot with carbon cycling rates larger than those of most near‐shore sediments. [ABSTRACT FROM AUTHOR]

Meiofauna, organisms smaller than 1 mm, are the most abundant and diverse invertebrates inhabiting the world's ocean floor but their contribution to benthic oxygen demand is still poorly constrained. This knowledge is crucial for understanding seabed respiration, global marine carbon, and oxygen cycles, which are relevant to all nutrient cycling and energy flows in the ecosystem. It is common to predict meiofauna respiration based on their biomass or volume, which are difficult to quantify, and thus meiofauna are rarely included in biogeochemistry studies. In addition, it is still unknown how well the generalized allometric relations describe all meiofauna respiration. Therefore, we used a novel approach specially developed for single meiofauna respiration measurements to derive the respiration rates of 10 meiofauna groups in two marine and one brackish coastal muddy environments under oxic and hypoxic conditions, representing natural sediment conditions. Our estimates suggest that large ostracods and juveniles of macrofauna (e.g., bivalves, trumpet worms, and priapulids) had the highest individual respiration rates. Meiofauna community as a whole contributed 3–33% to sediment oxygen uptake. However, the most important contributors to the overall sediment oxygen uptake were nematodes and foraminifera which had lower respiration rates but were highly abundant. Therefore, out of more than 22 meiofauna phyla, we recommend that nematode and foraminifera respiration, which contributes 3–30% (total 3–33%) to sediment oxygen uptake, should be taken into consideration in any estimations of benthic oxygen and carbon cycles. [ABSTRACT FROM AUTHOR]

The aquatic eddy covariance technique stands out as a powerful method for benthic O2 flux measurements in shelf environments because it integrates effects of naturally varying drivers of the flux such as current flow and light. In conventional eddy covariance instruments, the time shift caused by spatial separation of the measuring locations of flow and O2 concentration can produce substantial flux errors that are difficult to correct. We here introduce a triple O2 sensor eddy covariance instrument (3OEC) that by instrument design eliminates these errors. This is achieved by positioning three O2 sensors around the flow measuring volume, which allows the O2 concentration to be calculated at the point of the current flow measurements. The new instrument was tested in an energetic coastal environment with highly permeable coral reef sands colonised by microphytobenthos. Parallel deployments of the 3OEC and a conventional eddy covariance system (2OEC) demonstrate that the new instrument produces more consistent fluxes with lower error margin. 3OEC fluxes in general were lower than 2OEC fluxes, and the nighttime fluxes recorded by the two instruments were statistically different. We attribute this to the elimination of uncertainties associated with the time shift correction. The deployments at ∼ 10 m water depth revealed high day- and nighttime O2 fluxes despite the relatively low organic content of the coarse sediment and overlying water. High light utilisation efficiency of the microphytobenthos and bottom currents increasing pore water exchange facilitated the high benthic production and coupled respiration. 3OEC measurements after sunset documented a gradual transfer of negative flux signals from the small turbulence generated at the sediment–water interface to the larger wave-dominated eddies of the overlying water column that still carried a positive flux signal, suggesting concurrent fluxes in opposite directions depending on eddy size and a memory effect of large eddies. The results demonstrate that the 3OEC can improve the precision of benthic flux measurements, including measurements in environments considered challenging for the eddy covariance technique, and thereby produce novel insights into the mechanisms that control flux. We consider the fluxes produced by this instrument for the permeable reef sands the most realistic achievable with present-day technology. [ABSTRACT FROM AUTHOR]

The aquatic eddy covariance technique stands out as a method for benthic O[sub 2]-flux measurements because it measures non-invasively, but in the conventional instruments, the spatial separation of the measuring locations of the velocity and O[sub 2] sensors causes a time-shift that can be substantial and difficult to correct. Here we introduce a triple O2-sensor-eddy covariance instrument (3OEC) that by positioning of the O2-sensors around the flow measuring volume allows eliminating these time-shifts through signal averaging. The new instrument was used to determine O2-production and consumption in an energetic coastal environment with highly permeable coral reef sands colonized by microphytobenthos. The measurement at ~10 m water depth revealed O[sub 2]-fluxes that range among the highest reported for marine sediments despite relatively low organic content of the water and coarse sediment, indicating a central role of microphytobenthos for the carbon and nutrient cycling in the coral sand. High light utilization efficiency of the microphytobenthos and bottom currents increasing pore water exchange facilitated the high benthic production and respiration. The measurements documented a gradual transfer of the flux signal from the small turbulence generated at the sediment water interface to the larger wave-dominated eddies of the overlying water column with a delay influenced by the memory effect of eddies. These results demonstrate that the 3OEC can improve the precision of the flux measurements, including measurements in environments considered challenging for this technique, and thereby produce novel insights into the mechanisms that control flux. We consider the fluxes produced by this instrument for the permeable reef sands the most realistic achievable with present day technology. [ABSTRACT FROM AUTHOR]

Seagrass meadows play an important role in "blue carbon" sequestration and storage, but their dynamic metabolism is not fully understood. In a dense Zostera marina meadow, we measured benthic O2 fluxes by aquatic eddy covariance, water column concentrations of O2, and partial pressures of CO2 (pCO2) over 21 full days during peak growing season in April and June. Seagrass metabolism, derived from the O2 flux, varied markedly between the 2 months as biomass accumulated and water temperature increased from 16°C to 28°C, triggering a twofold increase in respiration and a trophic shift of the seagrass meadow from being a carbon sink to a carbon source. Seagrass metabolism was the major driver of diurnal fluctuations in water column O2 concentration and pCO2, ranging from 173 to 377 μmol L−1 and 193 to 859 ppmv, respectively. This 4.5‐fold variation in pCO2 was observed despite buffering by the carbonate system. Hysteresis in diurnal water column pCO2 vs. O2 concentration was attributed to storage of O2 and CO2 in seagrass tissue, air–water exchange of O2 and CO2, and CO2 storage in surface sediment. There was a ~ 1:1 mol‐to‐mol stoichiometric relationship between diurnal fluctuations in concentrations of O2 and dissolved inorganic carbon. Our measurements showed no stimulation of photosynthesis at high CO2 and low O2 concentrations, even though CO2 reached levels used in IPCC ocean acidification scenarios. This field study does not support the notion that seagrass meadows may be "winners" in future oceans with elevated CO2 concentrations and more frequent temperature extremes. [ABSTRACT FROM AUTHOR]

Shallow benthic habitats are hotspots for carbon cycling and energy flow, but metabolism (primary production and respiration) dynamics and habitat‐specific differences remain poorly understood. We investigated daily, seasonal, and annual metabolism in six key benthic habitats in the Baltic Sea using ~ 2900 h of in situ aquatic eddy covariance oxygen flux measurements. Rocky substrates had the highest metabolism rates. Habitat‐specific annual primary production per m2 was in the order Fucus vesiculosus canopy > Mytilus trossulus reef > Zostera marina canopy > mixed macrophytes canopy > sands, whereas respiration was in the order M. trossulus > F. vesiculosus > Z. marina > mixed macrophytes > sands > aphotic sediments. Winter metabolism contributed 22–31% of annual rates. Spatial upscaling revealed that benthic habitats drive > 90% of ecosystem metabolism in waters ≤5 m depth, highlighting their central role in carbon and nutrient cycling in shallow waters. [ABSTRACT FROM AUTHOR]

Quantitative studies of coral reefs are challenged by the three-dimensional hard structure of reefs and the high spatial variability and temporal dynamics of their metabolism. We used the non-invasive eddy correlation technique to examine respiration and photosynthesis rates, through O2 fluxes, from reef crests and reef slopes in the Florida Keys, USA. We assessed how the photosynthesis and respiration of different reef habitats is controlled by light and hydrodynamics. Numerous fluxes (over a 0.25 h period) were as high as 4500 mmol O2 m−2 d−1, which can only be explained by efficient light utilization by the phototrophic community and the complex canopy structure of the reef, having a many-fold larger surface area than its horizontal projection. Over diel cycles, the reef crest was net autotrophic, whereas on the reef slope oxygen production and respiration were balanced. The autotrophic nature of the shallow reef crests implies that the export of organics is an important source of primary production for the larger area. Net oxygen production on the reef crest was proportional to the light intensity, up to 1750 µmol photons m−2 s−1 and decreased thereafter as respiration was stimulated by high current velocities coincident with peak light levels. Nighttime respiration rates were also stimulated by the current velocity, through enhanced ventilation of the porous framework of the reef. Respiration rates were the highest directly after sunset, and then decreased during the night suggesting that highly labile photosynthates produced during the day fueled early-night respiration. The reef framework was also important to the acquisition of nutrients as the ambient nitrogen stock in the water had sufficient capacity to support these high production rates across the entire reef width. These direct measurements of complex reefs systems yielded high metabolic rates and dynamics that can only be determined through in situ, high temporal resolution measurements. [ABSTRACT FROM AUTHOR]

The article discusses a study which quantified benthic oxygen exchange rates of different shallow-water and hard-bottom substrates in a sub-Arctic fjord system in Greenland using the eddy correlation technique. It evaluates the applicability of the technique to such environments. It discusses the heterotrophic activities at the five measuring sites in the regional carbon cycling context. The study reveals that the oxygen exchange derived from the technique exhibited short-term variability that reflects the interplay of several dynamic controls.